Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0008300

Physical Location & Seq

Genomic Coordinates Forward (+)

71691958 .. 71696027

Gene Structure 4070 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG495600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1137 bp

ATGCATCATTCCAGGTTGTGCTGTTGGAGTCTCGGGATCGACTTGGTGGTCGAGTTCACACCGATTACTCGTTTGGTTTTCCGATTGACTTGGGTGCATCATGGTAAGCGGAGGATTGAGGAATATGAATTGTATTTGGAATTTTTGGCTGGGATCTTGGGGGTTAATCTTGTGTTTTTATGCTTTAGGTTGCATGGAGTATGTAAAGAGAATCCCTTGGCTCCATTAATTGGGAGACTGGGCTTGCCTTTATATCGTACCAGTGGTGATAACTCTGTGTTGTATGATCATGACTTAGAAAGCTATGCACTCTTTGATATGGATGGGAAACAAGTTCCTCAAGATTTGGTTACAAAAGTTGGTGTAAGATTTGAGGAAATTTTAAAAGAGACAGATGAGGTAAGAAAGGAACTCTCAGAAGACATGTCCATCACCCGTGCTTTCTCAATTGTCTTTGAAAGGAAACCAGAATTAAGGTTGGAAGGAATTTCCCATAAGGTACTGCAGTGGTATTTGTGCCGAATGGAAGGCTGGTTTGCAGCAGATGCTGATACAATTTCACTTAAAAGCTGGGATCAGGAAGAACTGCTTCCTGGTGGTCATGGTCTTATGGTCAGGGGCTATCGCCCTGTTATAAACACCCTTGCCAAAGGTCTTGACATTCGCCTGAGCCACAGGGTGACAAAAATTTTGAGGCGATATAATGGCGTGATGGTAACAGTAGAGGATGGGAGATCATTTGTTGCAGATGCTGCAATTATTGCTGTTCCTCTCGGTGTGCTCAAGGCAAATACCATAAAGTTTGAGCCAAAGCTACCCGATTGGAAGGAAGCAGCCATTGCTGACCTTGGAGTGGGAATCGAGAATAAGATAGTGTTGCACTTTGAGAAGGTGTTCTGGCCGAATGTGGAGTTTTTAGGAGTGGTTGCGGAGACATCTTACTGTTGCAGCTACTTTCTAAATCTTCACAAGGCAACTGGTCACTCTGTGCTTGTTTATATGCCTGCAGGGCAGCTGGCCAGAGACATTGAGAAAATGTCCGATGAAGAGGCTGCTAATTTTGCATATATGCAACTCAAGAAGATCCTTCCAGATGCTTCTGATCCGGTAATCCTTGTTTCTCGGCTTCTAACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006576 GO:0006595 GO:0006598 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009308 GO:0009310 GO:0009987 GO:0016491 GO:0016645 GO:0016647 GO:0034641 GO:0042402 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044106 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0046592 GO:0055114 GO:0071704 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00330 ko00410 map00330 map00410

Pfam Domains

Protein Families

Amino_oxidase

Protein Analysis

378

Amino Acids

42.96

Weight (kDa)

6.09

Isoelectric Point (pI)

38.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Amino_oxidase	PF01593	64 - 372	2.9e-49	Flavin containing amine oxidoreductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008300)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43020 AT3G59050
fragaria_vesca	FvH4_6g38950 FvH4_6g38950 FvH4_6g38950 FvH4_6g38950
malus_domestica	MD09G1145900.v1.1 MD17G1132400.v1.1
prunus_persica	Prupe.3G179900_v2.0.a1
pyrus_communis	pycom09g06620 pycom17g12600
rosa_chinensis	RchiOBHm_Chr2g0152541
rosa_laevigata	RLG00000020644
rosa_multiflora	Rmu_sc0014904.1_g000002 Rmu_sc0027677.1_g000003
rosa_roxburghii	Rroxscaffold_2G00095620
rosa_rugosa	Rorug02G0434300 Rorug02G0434400
rosa_samantha	Rh2AG495600 Rh2BG507400 Rh2CG481800 Rh2DG518700
rosa_wichuraiana	Rw2G040770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	635
AasI	GACNNNNNNGTC	1 cut(s)	47
AccB7I	CCANNNNNTGG	1 cut(s)	230
AciI	CCGC	2 cut(s)	109, 929
AclWI	GGATC	5 cut(s)	44, 161, 582, 1078, 1097
AcoI	YGGCCR	2 cut(s)	899, 1017
AcsI	RAATTY	4 cut(s)	140, 378, 486, 687
AdeI	CACNNNGTG	2 cut(s)	679, 988
AfaI	GTAC	2 cut(s)	259, 501
AfiI	CCNNNNNNNGG	2 cut(s)	230, 853
AflIII	ACRYGT	1 cut(s)	423
AgsI	TTSAA	1 cut(s)	458
AjnI	CCWGG	2 cut(s)	11, 592
AluBI	AGCT	5 cut(s)	303, 570, 814, 951, 1015
AluI	AGCT	5 cut(s)	303, 570, 814, 951, 1015
Alw21I	GWGCWC	1 cut(s)	783
Alw26I	GTCTC	5 cut(s)	35, 229, 383, 926, 1017
AlwI	GGATC	5 cut(s)	44, 161, 582, 1078, 1097
AlwNI	CAGNNNCTG	2 cut(s)	548, 752
Ama87I	CYCGRG	1 cut(s)	32
AoxI	GGCC	2 cut(s)	899, 1017
ApeKI	GCWGC	6 cut(s)	539, 752, 833, 948, 1012, 1052
ApoI	RAATTY	4 cut(s)	140, 378, 486, 687
ArsI	GACNNNNNNTTYG	2 cut(s)	673, 705
AseI	ATTAAT	1 cut(s)	227
Asp700I	GAANNNNTTC	2 cut(s)	588, 893
AsuHPI	GGTGA	3 cut(s)	278, 424, 691
AvaI	CYCGRG	1 cut(s)	32
BaeI	ACNNNNGTAYC	2 cut(s)	491, 524
BalI	TGGCCA	1 cut(s)	1019
BbsI	GAAGAC	1 cut(s)	426
Bbv12I	GWGCWC	1 cut(s)	783
BbvI	GCAGC	6 cut(s)	551, 739, 845, 960, 1024, 1039
BccI	CCATC	4 cut(s)	317, 437, 706, 722
BciT130I	CCWGG	2 cut(s)	13, 594
BclI	TGATCA	1 cut(s)	286
BcoDI	GTCTC	5 cut(s)	35, 229, 383, 926, 1017
BfmI	CTRYAG	2 cut(s)	503, 1005
BglI	GCCNNNNNGGC	1 cut(s)	1009
BisI	GCNGC	6 cut(s)	540, 753, 834, 949, 1013, 1053
BlsI	GCNGC	6 cut(s)	541, 754, 835, 950, 1014, 1054
Bme1390I	CCNGG	2 cut(s)	13, 594
BmeT110I	CYCGRG	1 cut(s)	32
BmiI	GGNNCC	1 cut(s)	222
BmrFI	CCNGG	2 cut(s)	13, 594
BmrI	ACTGGG	1 cut(s)	248
BmsI	GCATC	5 cut(s)	13, 106, 535, 739, 1084
BmuI	ACTGGG	1 cut(s)	248
BpiI	GAAGAC	1 cut(s)	426
Bpu10I	CCTNAGC	1 cut(s)	668
BpuEI	CTTGAG	3 cut(s)	324, 767, 1061
BsaJI	CCNNGG	2 cut(s)	216, 847
BsaWI	WCCGGW	1 cut(s)	1105
Bsc4I	CCNNNNNNNGG	2 cut(s)	230, 853
Bse1I	ACTGG	3 cut(s)	243, 261, 982
Bse3DI	GCAATG	1 cut(s)	837
BseBI	CCWGG	2 cut(s)	13, 594
BseDI	CCNNGG	2 cut(s)	216, 847
BseGI	GGATG	2 cut(s)	328, 733
BseLI	CCNNNNNNNGG	2 cut(s)	230, 853
BseMI	GCAATG	1 cut(s)	837
BseMII	CTCAG	2 cut(s)	429, 659
BseNI	ACTGG	3 cut(s)	243, 261, 982
BseXI	GCAGC	6 cut(s)	551, 739, 845, 960, 1024, 1039
BseYI	CCCAGC	2 cut(s)	149, 570
BshFI	GGCC	2 cut(s)	901, 1019
BsiHKAI	GWGCWC	1 cut(s)	783
BsiHKCI	CYCGRG	1 cut(s)	32
BsiSI	CCGG	1 cut(s)	1106
BslI	CCNNNNNNNGG	2 cut(s)	230, 853
BsmAI	GTCTC	5 cut(s)	35, 229, 383, 926, 1017
BsnI	GGCC	2 cut(s)	901, 1019
BsoBI	CYCGRG	1 cut(s)	32
Bsp1286I	GDGCHC	1 cut(s)	783
Bsp143I	GATC	7 cut(s)	36, 153, 286, 574, 734, 1083, 1102
BspACI	CCGC	2 cut(s)	109, 929
BspANI	GGCC	2 cut(s)	901, 1019
BspCNI	CTCAG	2 cut(s)	428, 660
BspHI	TCATGA	1 cut(s)	289
BspLI	GGNNCC	1 cut(s)	222
BspMAI	CTGCAG	2 cut(s)	507, 1009
BspPI	GGATC	5 cut(s)	44, 161, 582, 1078, 1097
BsrDI	GCAATG	1 cut(s)	837
BsrI	ACTGG	3 cut(s)	243, 261, 982
BssECI	CCNNGG	2 cut(s)	216, 847
BssMI	GATC	7 cut(s)	36, 153, 286, 574, 734, 1083, 1102
BssT1I	CCWWGG	2 cut(s)	216, 847
Bst2UI	CCWGG	2 cut(s)	13, 594
Bst4CI	ACNGT	2 cut(s)	721, 944
Bst6I	CTCTTC	1 cut(s)	1041
BstAPI	GCANNNNNTGC	4 cut(s)	545, 752, 761, 839
BstC8I	GCNNGC	3 cut(s)	245, 1005, 1017
BstDEI	CTNAG	3 cut(s)	295, 415, 668
BstF5I	GGATG	2 cut(s)	328, 733
BstKTI	GATC	7 cut(s)	39, 156, 289, 577, 737, 1086, 1105
BstMAI	GTCTC	5 cut(s)	35, 229, 383, 926, 1017
BstMBI	GATC	7 cut(s)	36, 153, 286, 574, 734, 1083, 1102
BstMWI	GCNNNNNNNGC	6 cut(s)	545, 752, 761, 839, 1009, 1061
BstNI	CCWGG	2 cut(s)	13, 594
BstNSI	RCATGY	1 cut(s)	427
BstSCI	CCNGG	2 cut(s)	11, 592
BstSFI	CTRYAG	2 cut(s)	503, 1005
BstV1I	GCAGC	6 cut(s)	551, 739, 845, 960, 1024, 1039
BstV2I	GAAGAC	1 cut(s)	426
BstX2I	RGATCY	2 cut(s)	153, 1083
BstYI	RGATCY	2 cut(s)	153, 1083
BsuRI	GGCC	2 cut(s)	901, 1019
BtsCI	GGATG	2 cut(s)	328, 733
BtsI	GCAGTG	1 cut(s)	512
BtsIMutI	CAGTG	2 cut(s)	268, 512
Cac8I	GCNNGC	3 cut(s)	245, 1005, 1017
CaiI	CAGNNNCTG	2 cut(s)	548, 752
CciI	TCATGA	1 cut(s)	289
Csp6I	GTAC	2 cut(s)	258, 500
CviAII	CATG	5 cut(s)	101, 194, 290, 424, 602
CviQI	GTAC	2 cut(s)	258, 500
DdeI	CTNAG	3 cut(s)	295, 415, 668
DpnI	GATC	7 cut(s)	38, 155, 288, 576, 736, 1085, 1104
DpnII	GATC	7 cut(s)	36, 153, 286, 574, 734, 1083, 1102
DraI	TTTAAA	1 cut(s)	384
DraIII	CACNNNGTG	2 cut(s)	679, 988
DrdI	GACNNNNNNGTC	1 cut(s)	47
DseDI	GACNNNNNNGTC	1 cut(s)	47
EaeI	YGGCCR	2 cut(s)	899, 1017
Eam1104I	CTCTTC	1 cut(s)	1041
EarI	CTCTTC	1 cut(s)	1041
Eco130I	CCWWGG	2 cut(s)	216, 847
Eco88I	CYCGRG	1 cut(s)	32
EcoRII	CCWGG	2 cut(s)	11, 592
EcoT14I	CCWWGG	2 cut(s)	216, 847
EcoT22I	ATGCAT	1 cut(s)	6
ErhI	CCWWGG	2 cut(s)	216, 847
FaeI	CATG	5 cut(s)	104, 197, 293, 427, 605
FalI	AAGNNNNNCTT	2 cut(s)	573, 605
FatI	CATG	5 cut(s)	100, 193, 289, 423, 601
FbaI	TGATCA	1 cut(s)	286
Fnu4HI	GCNGC	6 cut(s)	540, 753, 834, 949, 1013, 1053
FokI	GGATG	2 cut(s)	335, 740
Fsp4HI	GCNGC	6 cut(s)	540, 753, 834, 949, 1013, 1053
GluI	GCNGC	6 cut(s)	540, 753, 834, 949, 1013, 1053
GsaI	CCCAGC	2 cut(s)	153, 574
HaeIII	GGCC	2 cut(s)	901, 1019
HapII	CCGG	1 cut(s)	1106
Hin1II	CATG	5 cut(s)	104, 197, 293, 427, 605
HinfI	GANTC	3 cut(s)	28, 211, 858
HpaII	CCGG	1 cut(s)	1106
HphI	GGTGA	3 cut(s)	278, 424, 691
Hpy166II	GTNNAC	1 cut(s)	57
Hpy188I	TCNGA	4 cut(s)	83, 418, 1042, 1102
Hpy188III	TCNNGA	8 cut(s)	34, 290, 341, 578, 656, 862, 1078, 1091
Hpy8I	GTNNAC	1 cut(s)	57
HpyAV	CCTTC	5 cut(s)	476, 521, 820, 883, 1097
HpyCH4III	ACNGT	2 cut(s)	721, 944
HpyF10VI	GCNNNNNNNGC	6 cut(s)	545, 752, 761, 839, 1009, 1061
HpyF3I	CTNAG	3 cut(s)	295, 415, 668
Hsp92II	CATG	5 cut(s)	104, 197, 293, 427, 605
Ksp22I	TGATCA	1 cut(s)	286
Kzo9I	GATC	7 cut(s)	36, 153, 286, 574, 734, 1083, 1102
LmnI	GCTCC	1 cut(s)	226
Lsp1109I	GCAGC	6 cut(s)	551, 739, 845, 960, 1024, 1039
LweI	GCATC	5 cut(s)	13, 106, 535, 739, 1084
MaeIII	GTNAC	4 cut(s)	349, 679, 715, 980
MalI	GATC	7 cut(s)	38, 155, 288, 576, 736, 1085, 1104
MboI	GATC	7 cut(s)	36, 153, 286, 574, 734, 1083, 1102
MboII	GAAGA	5 cut(s)	431, 593, 956, 1058, 1093
MfeI	CAATTG	1 cut(s)	447
MflI	RGATCY	2 cut(s)	153, 1083
MhlI	GDGCHC	1 cut(s)	783
MlsI	TGGCCA	1 cut(s)	1019
MluNI	TGGCCA	1 cut(s)	1019
MlyI	GAGTC	1 cut(s)	37
MmeI	TCCRAC	2 cut(s)	5, 459
MnlI	CCTC	9 cut(s)	105, 112, 348, 367, 391, 687, 718, 780, 1042
Mox20I	TGGCCA	1 cut(s)	1019
Mph1103I	ATGCAT	1 cut(s)	6
MroXI	GAANNNNTTC	2 cut(s)	588, 893
MscI	TGGCCA	1 cut(s)	1019
MseI	TTAA	5 cut(s)	165, 227, 383, 473, 564
Msp20I	TGGCCA	1 cut(s)	1019
MspA1I	CMGCKG	1 cut(s)	1015
MspI	CCGG	1 cut(s)	1106
MspR9I	CCNGG	2 cut(s)	13, 594
MunI	CAATTG	1 cut(s)	447
MvaI	CCWGG	2 cut(s)	13, 594
MwoI	GCNNNNNNNGC	6 cut(s)	545, 752, 761, 839, 1009, 1061
NdeII	GATC	7 cut(s)	36, 153, 286, 574, 734, 1083, 1102
NlaIII	CATG	5 cut(s)	104, 197, 293, 427, 605
NlaIV	GGNNCC	1 cut(s)	222
NmeAIII	GCCGAG	1 cut(s)	1102
NmuCI	GTSAC	2 cut(s)	679, 980
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	427
PagI	TCATGA	1 cut(s)	289
PciI	ACATGT	1 cut(s)	423
PdmI	GAANNNNTTC	2 cut(s)	588, 893
PfeI	GAWTC	2 cut(s)	211, 858
PflMI	CCANNNNNTGG	1 cut(s)	230
PkrI	GCNGC	6 cut(s)	541, 754, 835, 950, 1014, 1054
PleI	GAGTC	1 cut(s)	36
PpsI	GAGTC	1 cut(s)	36
PscI	ACATGT	1 cut(s)	423
PshBI	ATTAAT	1 cut(s)	227
PsiI	TTATAA	1 cut(s)	635
Psp6I	CCWGG	2 cut(s)	11, 592
PspFI	CCCAGC	2 cut(s)	149, 570
PspGI	CCWGG	2 cut(s)	11, 592
PspN4I	GGNNCC	1 cut(s)	222
PstI	CTGCAG	2 cut(s)	507, 1009
PstNI	CAGNNNCTG	2 cut(s)	548, 752
PsuI	RGATCY	2 cut(s)	153, 1083
PvuII	CAGCTG	1 cut(s)	1015
RsaI	GTAC	2 cut(s)	259, 501
RsaNI	GTAC	2 cut(s)	258, 500
SaqAI	TTAA	5 cut(s)	165, 227, 383, 473, 564
SatI	GCNGC	6 cut(s)	540, 753, 834, 949, 1013, 1053
Sau3AI	GATC	7 cut(s)	36, 153, 286, 574, 734, 1083, 1102
SbfI	CCTGCAGG	1 cut(s)	1009
SchI	GAGTC	1 cut(s)	37
ScrFI	CCNGG	2 cut(s)	13, 594
SdaI	CCTGCAGG	1 cut(s)	1009
SduI	GDGCHC	1 cut(s)	783
SfaNI	GCATC	5 cut(s)	13, 106, 535, 739, 1084
SfcI	CTRYAG	2 cut(s)	503, 1005
SmlI	CTYRAG	3 cut(s)	339, 782, 1076
SmoI	CTYRAG	3 cut(s)	339, 782, 1076
Sse8387I	CCTGCAGG	1 cut(s)	1009
SsiI	CCGC	2 cut(s)	109, 929
StyD4I	CCNGG	2 cut(s)	11, 592
StyI	CCWWGG	2 cut(s)	216, 847
TaaI	ACNGT	2 cut(s)	721, 944
TaqI	TCGA	3 cut(s)	39, 51, 861
TfiI	GAWTC	2 cut(s)	211, 858
Tru1I	TTAA	5 cut(s)	165, 227, 383, 473, 564
Tru9I	TTAA	5 cut(s)	165, 227, 383, 473, 564
TscAI	CASTG	2 cut(s)	268, 512
TseFI	GTSAC	2 cut(s)	679, 980
TseI	GCWGC	6 cut(s)	539, 752, 833, 948, 1012, 1052
Tsp45I	GTSAC	2 cut(s)	679, 980
TspDTI	ATGAA	2 cut(s)	141, 1059
TspRI	CASTG	2 cut(s)	268, 512
Van91I	CCANNNNNTGG	1 cut(s)	230
VspI	ATTAAT	1 cut(s)	227
XapI	RAATTY	4 cut(s)	140, 378, 486, 687
XceI	RCATGY	1 cut(s)	427
XmnI	GAANNNNTTC	2 cut(s)	588, 893
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.