FvH4_6g38950

Polyamine oxidase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Forward (+)
30806430 .. 30809931
3502 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g38950.t2

Sequence Viewer

Length: 1503 bp
ATGGCTTCCGGTAATAGCAACAGTAATAGTAGTAGTACTACTCCCCAATTGCGCAGAGCTGCCTGCAATTCGGAGGTTGAGAGGAGGCCGACCTTGAGCGGAACGACGCCGTCTCCGTCTGTGATAGTGATCGGTGGAGGCATGGCTGGGATTGCAGCTGCGCGTGCTCTTCACGATGCTTCATTTCAGGTTGTGCTGTTGGAGTCTCGGGATCGACTTGGTGGTCGGGTTCACACTGATTACTCGTTTGGTTTTCCGATTGACTTGGGTGCATCATGGTTGCATGGAGTATGTAAAGAGAATCCCTTGGCTCCATTAATTGGGAGACTGGGTTTGCCTTTATATCGAACCAGTGGTGATAACTCTGTGTTGTATGATCATGACTTAGAAAGCTATGCACTCTTTGATATGGACGGGAAACAAGTTCCTCAAGATTTAGTTACGAAAGTTGGTCTAACATTTGAGGAAATTTTAAAAGAGGCAAATGAGGTAAGAAAGGAATTCCCAGAAGATATGTCCATCTCCCGTGCTTTTTCAATTGTTTTTCAAAGGAAACCAGAATTAAGGTTGGAAGGAATTCCCCATAAGGTATTGCAGTGGTATTTGTGCCGAATGGAAGGCTGGTTTGCAGCAGATGCTGATACAATTTCTCTTAAATGCTGGGATCAGGAAGAACTGCTTCCTGGTGGTCATGGTCTTATGGTCAGGGGATATCGCCCTGTTATAAACACCCTTGCCAAAGGTCTTGACATTCGCCTAGGCCACAGGGTGACAAAAATTTTAAGGCGGTATAATGGCGTGATGGTAACAGTAGAAGATGGGAGATCATTTATTGCAGATGCTGCTATTGTTGCTGTTCCCCTCGGTGTGCTCAAGGCAAATATCATCAAGTTTGAGCCAAAGCTACCTGACTGGAAGGATGCAGCCATTGCTGAACTTGGAGTGGGAATTGAGAATAAGATAGTGTTGCACTTTGAGAAGGTGTTCTGGCCCAATGTGGAGTTTTTAGGAGTGGTTGCGGAGACATCTTACTGTTGCAGCTACTTTCTAAATCTTCACAAGGCTACTGGTCATTCTGTGCTTGTTTATATGCCTGCAGGGCAGCTGGCCAAAGACATTGAGAAAATGTCTGATGAAAAGGCTGCTGACTTCGCATATACGCAACTCAAGAAGATCCTGCCAGATGCTTCTGATCCGATTCATTTCCTTGTTTCTCGCTGGGGAACAGATATTAATTCACTTGGGTCCTATAGCTACGATATGGTAGGCAAACCCCATGATCTGTATGAGAAGCTAAGGGTCCCAGTAGATAACCTCTTCTTTGCTGGGGAGGCAACAAGTACGGACTTCCCAGGTTCTGTGCATGGTGCATTCGCTACTGGAGTGATGGCTGCTGAAGATTGCAGGATGCGCGTTCTGGAGCGATATGGTGAGTTGGATTTGTTCGAGCCAGTCATGGGTGAGGAGGCCATGTCTATCCCAATTCAGATCTCCCGCCTGTAA

Protein Analysis

501

Amino Acids

55.27

Weight (kDa)

5.61

Isoelectric Point (pI)

38.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAD_binding_2 PF00890 41 - 84 1.9e-06 FAD binding domain
FAD_oxidored PF12831 41 - 76 2.4e-06 FAD dependent oxidoreductase
NAD_binding_8 PF13450 43 - 101 4.3e-14 NAD(P)-binding Rossmann-like domain
Amino_oxidase PF01593 48 - 468 4.9e-97 Flavin containing amine oxidoreductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 725
AasI GACNNNNNNGTC 1 cut(s) 222
Acc16I TGCGCA 1 cut(s) 53
AccB7I CCANNNNNTGG 1 cut(s) 320
AccBSI CCGCTC 1 cut(s) 99
AccII CGCG 2 cut(s) 163, 1413
AciI CCGC 4 cut(s) 99, 787, 1019, 1495
AclWI GGATC 4 cut(s) 219, 672, 1168, 1187
AcoI YGGCCR 1 cut(s) 1107
AcsI RAATTY 4 cut(s) 468, 500, 576, 777
AcuI CTGAAG 1 cut(s) 1416
AcyI GRCGYC 1 cut(s) 107
AdeI CACNNNGTG 1 cut(s) 769
AfaI GTAC 2 cut(s) 37, 1342
AfiI CCNNNNNNNGG 2 cut(s) 320, 1457
AgsI TTSAA 2 cut(s) 537, 548
AjnI CCWGG 2 cut(s) 682, 1351
AluBI AGCT 8 cut(s) 59, 158, 393, 904, 1041, 1105, 1254, 1294
AluI AGCT 8 cut(s) 59, 158, 393, 904, 1041, 1105, 1254, 1294
Alw21I GWGCWC 2 cut(s) 169, 873
Alw26I GTCTC 4 cut(s) 117, 210, 319, 1016
AlwI GGATC 4 cut(s) 219, 672, 1168, 1187
AlwNI CAGNNNCTG 3 cut(s) 638, 842, 1358
Ama87I CYCGRG 1 cut(s) 207
AoxI GGCC 5 cut(s) 86, 760, 989, 1107, 1467
ApoI RAATTY 4 cut(s) 468, 500, 576, 777
AseI ATTAAT 2 cut(s) 317, 1233
Asp700I GAANNNNTTC 3 cut(s) 576, 678, 983
AspA2I CCTAGG 1 cut(s) 757
AspLEI GCGC 3 cut(s) 54, 163, 1413
AspS9I GGNCC 3 cut(s) 990, 1245, 1300
AsuHPI GGTGA 4 cut(s) 368, 781, 1442, 1472
AvaI CYCGRG 1 cut(s) 207
AvaII GGWCC 2 cut(s) 1245, 1300
AvrII CCTAGG 1 cut(s) 757
BalI TGGCCA 1 cut(s) 1109
Bbv12I GWGCWC 2 cut(s) 169, 873
BccI CCATC 4 cut(s) 527, 796, 812, 1381
BceAI ACGGC 1 cut(s) 94
BciT130I CCWGG 2 cut(s) 684, 1353
BclI TGATCA 1 cut(s) 376
BcoDI GTCTC 4 cut(s) 117, 210, 319, 1016
BfaI CTAG 1 cut(s) 758
BfmI CTRYAG 2 cut(s) 1095, 1249
BglI GCCNNNNNGGC 1 cut(s) 1099
BglII AGATCT 1 cut(s) 1488
BlnI CCTAGG 1 cut(s) 757
BmcAI AGTACT 1 cut(s) 37
Bme1390I CCNGG 2 cut(s) 684, 1353
Bme18I GGWCC 2 cut(s) 1245, 1300
BmeT110I CYCGRG 1 cut(s) 207
BmgT120I GGNCC 3 cut(s) 990, 1245, 1300
BmiI GGNNCC 4 cut(s) 312, 1246, 1301, 1302
BmrFI CCNGG 2 cut(s) 684, 1353
BmrI ACTGGG 2 cut(s) 338, 1298
BmsI GCATC 7 cut(s) 166, 281, 625, 829, 910, 1174, 1398
BmuI ACTGGG 2 cut(s) 338, 1298
BpmI CTGGAG 2 cut(s) 1401, 1439
Bpu10I CCTNAGC 1 cut(s) 1295
BpuEI CTTGAG 4 cut(s) 115, 414, 857, 1151
BsaBI GATNNNNATC 1 cut(s) 128
BsaHI GRCGYC 1 cut(s) 107
BsaJI CCNNGG 4 cut(s) 306, 757, 862, 1351
BsaWI WCCGGW 1 cut(s) 8
BsaXI ACNNNNNCTCC 6 cut(s) 97, 127, 316, 346, 1457, 1487
Bsc4I CCNNNNNNNGG 2 cut(s) 320, 1457
Bse1I ACTGG 7 cut(s) 333, 351, 917, 1072, 1304, 1384, 1451
Bse3DI GCAATG 1 cut(s) 927
Bse8I GATNNNNATC 1 cut(s) 128
BseBI CCWGG 2 cut(s) 684, 1353
BseDI CCNNGG 4 cut(s) 306, 757, 862, 1351
BseGI GGATG 2 cut(s) 925, 1413
BseJI GATNNNNATC 1 cut(s) 128
BseLI CCNNNNNNNGG 2 cut(s) 320, 1457
BseMI GCAATG 1 cut(s) 927
BseNI ACTGG 7 cut(s) 333, 351, 917, 1072, 1304, 1384, 1451
BseRI GAGGAG 2 cut(s) 97, 1478
BseYI CCCAGC 4 cut(s) 146, 660, 1218, 1325
Bsh1236I CGCG 2 cut(s) 163, 1413
BshFI GGCC 5 cut(s) 88, 762, 991, 1109, 1469
BsiHKAI GWGCWC 2 cut(s) 169, 873
BsiHKCI CYCGRG 1 cut(s) 207
BsiSI CCGG 1 cut(s) 9
BslFI GGGAC 1 cut(s) 1286
BslI CCNNNNNNNGG 2 cut(s) 320, 1457
BsmAI GTCTC 4 cut(s) 117, 210, 319, 1016
BsmBI CGTCTC 1 cut(s) 117
BsmFI GGGAC 1 cut(s) 1286
BsmI GAATGC 1 cut(s) 1370
BsnI GGCC 5 cut(s) 88, 762, 991, 1109, 1469
BsoBI CYCGRG 1 cut(s) 207
Bsp1286I GDGCHC 2 cut(s) 169, 873
Bsp143I GATC 9 cut(s) 129, 211, 376, 664, 824, 1173, 1192, 1279, 1488
BspACI CCGC 4 cut(s) 99, 787, 1019, 1495
BspANI GGCC 5 cut(s) 88, 762, 991, 1109, 1469
BspFNI CGCG 2 cut(s) 163, 1413
BspHI TCATGA 1 cut(s) 379
BspLI GGNNCC 4 cut(s) 312, 1246, 1301, 1302
BspMAI CTGCAG 1 cut(s) 1099
BspPI GGATC 4 cut(s) 219, 672, 1168, 1187
BspQI GCTCTTC 1 cut(s) 174
BsrBI CCGCTC 1 cut(s) 99
BsrDI GCAATG 1 cut(s) 927
BsrI ACTGG 7 cut(s) 333, 351, 917, 1072, 1304, 1384, 1451
BssECI CCNNGG 4 cut(s) 306, 757, 862, 1351
BssMI GATC 9 cut(s) 129, 211, 376, 664, 824, 1173, 1192, 1279, 1488
BssNI GRCGYC 1 cut(s) 107
BssT1I CCWWGG 2 cut(s) 306, 757
Bst2UI CCWGG 2 cut(s) 684, 1353
Bst4CI ACNGT 3 cut(s) 23, 811, 1034
Bst6I CTCTTC 2 cut(s) 174, 1322
BstACI GRCGYC 1 cut(s) 107
BstAPI GCANNNNNTGC 3 cut(s) 635, 842, 929
BstC8I GCNNGC 4 cut(s) 64, 165, 1095, 1107
BstDEI CTNAG 2 cut(s) 385, 1295
BstF5I GGATG 2 cut(s) 925, 1413
BstFNI CGCG 2 cut(s) 163, 1413
BstHHI GCGC 3 cut(s) 54, 163, 1413
BstKTI GATC 9 cut(s) 132, 214, 379, 667, 827, 1176, 1195, 1282, 1491
BstMAI GTCTC 4 cut(s) 117, 210, 319, 1016
BstMBI GATC 9 cut(s) 129, 211, 376, 664, 824, 1173, 1192, 1279, 1488
BstNI CCWGG 2 cut(s) 684, 1353
BstSCI CCNGG 2 cut(s) 682, 1351
BstSFI CTRYAG 2 cut(s) 1095, 1249
BstUI CGCG 2 cut(s) 163, 1413
BstX2I RGATCY 2 cut(s) 1173, 1488
BstYI RGATCY 2 cut(s) 1173, 1488
BsuRI GGCC 5 cut(s) 88, 762, 991, 1109, 1469
BtsCI GGATG 2 cut(s) 925, 1413
BtsI GCAGTG 1 cut(s) 602
BtsIMutI CAGTG 3 cut(s) 234, 358, 602
Cac8I GCNNGC 4 cut(s) 64, 165, 1095, 1107
CaiI CAGNNNCTG 3 cut(s) 638, 842, 1358
CciI TCATGA 1 cut(s) 379
CfoI GCGC 3 cut(s) 54, 163, 1413
Cfr13I GGNCC 3 cut(s) 990, 1245, 1300
CseI GACGC 1 cut(s) 115
Csp6I GTAC 2 cut(s) 36, 1341
CviAII CATG 9 cut(s) 142, 276, 284, 380, 692, 1277, 1364, 1456, 1471
CviQI GTAC 2 cut(s) 36, 1341
DdeI CTNAG 2 cut(s) 385, 1295
DpnI GATC 9 cut(s) 131, 213, 378, 666, 826, 1175, 1194, 1281, 1490
DpnII GATC 9 cut(s) 129, 211, 376, 664, 824, 1173, 1192, 1279, 1488
DraI TTTAAA 1 cut(s) 474
DraIII CACNNNGTG 1 cut(s) 769
DrdI GACNNNNNNGTC 1 cut(s) 222
DseDI GACNNNNNNGTC 1 cut(s) 222
EaeI YGGCCR 1 cut(s) 1107
Eam1104I CTCTTC 2 cut(s) 174, 1322
EarI CTCTTC 2 cut(s) 174, 1322
Eco130I CCWWGG 2 cut(s) 306, 757
Eco32I GATATC 1 cut(s) 713
Eco47I GGWCC 2 cut(s) 1245, 1300
Eco57I CTGAAG 1 cut(s) 1416
Eco88I CYCGRG 1 cut(s) 207
EcoO109I RGGNCCY 2 cut(s) 1245, 1300
EcoRI GAATTC 2 cut(s) 500, 576
EcoRII CCWGG 2 cut(s) 682, 1351
EcoRV GATATC 1 cut(s) 713
EcoT14I CCWWGG 2 cut(s) 306, 757
ErhI CCWWGG 2 cut(s) 306, 757
Esp3I CGTCTC 1 cut(s) 117
FaeI CATG 9 cut(s) 145, 279, 287, 383, 695, 1280, 1367, 1459, 1474
FalI AAGNNNNNCTT 2 cut(s) 663, 695
FaqI GGGAC 1 cut(s) 1286
FatI CATG 9 cut(s) 141, 275, 283, 379, 691, 1276, 1363, 1455, 1470
FbaI TGATCA 1 cut(s) 376
FokI GGATG 2 cut(s) 932, 1420
FspBI CTAG 1 cut(s) 758
FspI TGCGCA 1 cut(s) 53
GlaI GCGC 3 cut(s) 53, 162, 1412
GsaI CCCAGC 4 cut(s) 150, 664, 1222, 1329
GsuI CTGGAG 2 cut(s) 1401, 1439
HaeIII GGCC 5 cut(s) 88, 762, 991, 1109, 1469
HapII CCGG 1 cut(s) 9
HgaI GACGC 1 cut(s) 115
HhaI GCGC 3 cut(s) 54, 163, 1413
Hin1I GRCGYC 1 cut(s) 107
Hin1II CATG 9 cut(s) 145, 279, 287, 383, 695, 1280, 1367, 1459, 1474
Hin6I GCGC 3 cut(s) 52, 161, 1411
HinP1I GCGC 3 cut(s) 52, 161, 1411
HinfI GANTC 3 cut(s) 203, 301, 1198
HpaII CCGG 1 cut(s) 9
HphI GGTGA 4 cut(s) 368, 781, 1442, 1472
Hpy166II GTNNAC 1 cut(s) 232
Hpy188I TCNGA 6 cut(s) 73, 258, 1132, 1192, 1197, 1488
Hpy188III TCNNGA 8 cut(s) 173, 209, 380, 431, 668, 746, 1168, 1418
Hpy8I GTNNAC 1 cut(s) 232
Hpy99I CGWCG 1 cut(s) 109
HpyAV CCTTC 4 cut(s) 566, 611, 910, 973
HpyCH4III ACNGT 3 cut(s) 23, 811, 1034
HpyF3I CTNAG 2 cut(s) 385, 1295
Hsp92I GRCGYC 1 cut(s) 107
Hsp92II CATG 9 cut(s) 145, 279, 287, 383, 695, 1280, 1367, 1459, 1474
HspAI GCGC 3 cut(s) 52, 161, 1411
KflI GGGWCCC 1 cut(s) 1300
Ksp22I TGATCA 1 cut(s) 376
Kzo9I GATC 9 cut(s) 129, 211, 376, 664, 824, 1173, 1192, 1279, 1488
LguI GCTCTTC 1 cut(s) 174
LmnI GCTCC 2 cut(s) 316, 1420
LweI GCATC 7 cut(s) 166, 281, 625, 829, 910, 1174, 1398
MaeI CTAG 1 cut(s) 758
MaeIII GTNAC 3 cut(s) 439, 769, 805
MalI GATC 9 cut(s) 131, 213, 378, 666, 826, 1175, 1194, 1281, 1490
MbiI CCGCTC 1 cut(s) 99
MboI GATC 9 cut(s) 129, 211, 376, 664, 824, 1173, 1192, 1279, 1488
MboII GAAGA 8 cut(s) 161, 521, 683, 827, 1046, 1183, 1309, 1409
MfeI CAATTG 2 cut(s) 47, 537
MflI RGATCY 2 cut(s) 1173, 1488
MhlI GDGCHC 2 cut(s) 169, 873
MlsI TGGCCA 1 cut(s) 1109
MluNI TGGCCA 1 cut(s) 1109
MlyI GAGTC 1 cut(s) 212
MmeI TCCRAC 3 cut(s) 180, 549, 1416
Mox20I TGGCCA 1 cut(s) 1109
MroXI GAANNNNTTC 3 cut(s) 576, 678, 983
MscI TGGCCA 1 cut(s) 1109
MseI TTAA 6 cut(s) 317, 473, 563, 654, 782, 1233
Msp20I TGGCCA 1 cut(s) 1109
MspA1I CMGCKG 2 cut(s) 158, 1105
MspI CCGG 1 cut(s) 9
MspR9I CCNGG 2 cut(s) 684, 1353
MunI CAATTG 2 cut(s) 47, 537
Mva1269I GAATGC 1 cut(s) 1370
MvaI CCWGG 2 cut(s) 684, 1353
MvnI CGCG 2 cut(s) 163, 1413
NdeII GATC 9 cut(s) 129, 211, 376, 664, 824, 1173, 1192, 1279, 1488
NlaIII CATG 9 cut(s) 145, 279, 287, 383, 695, 1280, 1367, 1459, 1474
NlaIV GGNNCC 4 cut(s) 312, 1246, 1301, 1302
NmuCI GTSAC 1 cut(s) 769
NsbI TGCGCA 1 cut(s) 53
PagI TCATGA 1 cut(s) 379
PciSI GCTCTTC 1 cut(s) 174
PcsI WCGNNNNNNNCGW 1 cut(s) 113
PctI GAATGC 1 cut(s) 1370
PdmI GAANNNNTTC 3 cut(s) 576, 678, 983
PfeI GAWTC 2 cut(s) 301, 1198
PflFI GACNNNGTC 1 cut(s) 109
PflMI CCANNNNNTGG 1 cut(s) 320
PleI GAGTC 1 cut(s) 211
PpsI GAGTC 1 cut(s) 211
PpuMI RGGWCCY 2 cut(s) 1245, 1300
PshBI ATTAAT 2 cut(s) 317, 1233
PsiI TTATAA 1 cut(s) 725
Psp5II RGGWCCY 2 cut(s) 1245, 1300
Psp6I CCWGG 2 cut(s) 682, 1351
PspFI CCCAGC 4 cut(s) 146, 660, 1218, 1325
PspGI CCWGG 2 cut(s) 682, 1351
PspN4I GGNNCC 4 cut(s) 312, 1246, 1301, 1302
PspPI GGNCC 3 cut(s) 990, 1245, 1300
PspPPI RGGWCCY 2 cut(s) 1245, 1300
PstI CTGCAG 1 cut(s) 1099
PstNI CAGNNNCTG 3 cut(s) 638, 842, 1358
PsuI RGATCY 2 cut(s) 1173, 1488
PsyI GACNNNGTC 1 cut(s) 109
PvuII CAGCTG 2 cut(s) 158, 1105
RsaI GTAC 2 cut(s) 37, 1342
RsaNI GTAC 2 cut(s) 36, 1341
SapI GCTCTTC 1 cut(s) 174
SaqAI TTAA 6 cut(s) 317, 473, 563, 654, 782, 1233
Sau3AI GATC 9 cut(s) 129, 211, 376, 664, 824, 1173, 1192, 1279, 1488
Sau96I GGNCC 3 cut(s) 990, 1245, 1300
SbfI CCTGCAGG 1 cut(s) 1099
ScaI AGTACT 1 cut(s) 37
SchI GAGTC 1 cut(s) 212
ScrFI CCNGG 2 cut(s) 684, 1353
SdaI CCTGCAGG 1 cut(s) 1099
SduI GDGCHC 2 cut(s) 169, 873
SfaNI GCATC 7 cut(s) 166, 281, 625, 829, 910, 1174, 1398
SfcI CTRYAG 2 cut(s) 1095, 1249
SinI GGWCC 2 cut(s) 1245, 1300
SmlI CTYRAG 4 cut(s) 94, 429, 872, 1166
SmoI CTYRAG 4 cut(s) 94, 429, 872, 1166
Sse8387I CCTGCAGG 1 cut(s) 1099
SsiI CCGC 4 cut(s) 99, 787, 1019, 1495
SspMI CTAG 1 cut(s) 758
StyD4I CCNGG 2 cut(s) 682, 1351
StyI CCWWGG 2 cut(s) 306, 757
TaaI ACNGT 3 cut(s) 23, 811, 1034
TaqI TCGA 3 cut(s) 214, 346, 1446
TatI WGTACW 1 cut(s) 35
TfiI GAWTC 2 cut(s) 301, 1198
Tru1I TTAA 6 cut(s) 317, 473, 563, 654, 782, 1233
Tru9I TTAA 6 cut(s) 317, 473, 563, 654, 782, 1233
TscAI CASTG 3 cut(s) 241, 358, 602
TseFI GTSAC 1 cut(s) 769
Tsp45I GTSAC 1 cut(s) 769
TspDTI ATGAA 3 cut(s) 171, 1149, 1190
TspGWI ACGGA 2 cut(s) 105, 1358
TspRI CASTG 3 cut(s) 241, 358, 602
Tth111I GACNNNGTC 1 cut(s) 109
Van91I CCANNNNNTGG 1 cut(s) 320
VpaK11BI GGWCC 2 cut(s) 1245, 1300
VspI ATTAAT 2 cut(s) 317, 1233
XapI RAATTY 4 cut(s) 468, 500, 576, 777
XmaJI CCTAGG 1 cut(s) 757
XmnI GAANNNNTTC 3 cut(s) 576, 678, 983
XspI CTAG 1 cut(s) 758
ZrmI AGTACT 1 cut(s) 37
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.