Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0008300

Physical Location & Seq

Genomic Coordinates Reverse (-)

55540060 .. 55541149

Gene Structure 1090 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0434300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGGAGAATTATAGATCCAAGTCCTGTAGAGATGGGAGGAACACGCAGATGGAGGTCTACTATGGAGGCAGCAGAGATGAGAGGAATATGCAGATGGAGGTCTACTATGGAGGCAAGGCAGCTCCACCACCACCACCACCACCAACAAGCATGAGAGATCTCAAGAGTTACAGTGTCAACTATACTGGCTCTGGTACTTCTGGTGCATACCCAAATCATCAGATTGTTAAAGATGTGAAGATCAAGAAAGGCAAGAGCAGCTTGGGGACATCCACATCAAAGATCTGGAGCTTGGCTGACCCAGAGTTGCAGAGGAAGAAGAGGGTTGCTGGATACAAAGTCTATTCAGCTGAGGAGAAGATGAAAGGGTCCTTCAAAAAGAGCTTTAAGTGGATTAAGAGCACCTACACCCAAGTAGTCTATGGCTGGCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006576 GO:0006595 GO:0006598 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009308 GO:0009310 GO:0009987 GO:0016491 GO:0016645 GO:0016647 GO:0034641 GO:0042402 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044106 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0046592 GO:0055114 GO:0071704 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00330 ko00410 map00330 map00410

Pfam Domains

Protein Families

Amino_oxidase

Protein Analysis

144

Amino Acids

16.39

Weight (kDa)

9.89

Isoelectric Point (pI)

22.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF3511	PF12023	99 - 142	3.9e-23	Domain of unknown function (DUF3511)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0008300)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43020 AT3G59050
fragaria_vesca	FvH4_6g38950 FvH4_6g38950 FvH4_6g38950 FvH4_6g38950
malus_domestica	MD09G1145900.v1.1 MD17G1132400.v1.1
prunus_persica	Prupe.3G179900_v2.0.a1
pyrus_communis	pycom09g06620 pycom17g12600
rosa_chinensis	RchiOBHm_Chr2g0152541
rosa_laevigata	RLG00000020644
rosa_multiflora	Rmu_sc0014904.1_g000002 Rmu_sc0027677.1_g000003
rosa_roxburghii	Rroxscaffold_2G00095620
rosa_rugosa	Rorug02G0434300 Rorug02G0434400
rosa_samantha	Rh2AG495600 Rh2BG507400 Rh2CG481800 Rh2DG518700
rosa_wichuraiana	Rw2G040770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	57, 102
AclWI	GGATC	1 cut(s)	9
AfaI	GTAC	1 cut(s)	196
AgsI	TTSAA	1 cut(s)	376
AluBI	AGCT	5 cut(s)	122, 261, 291, 350, 384
AluI	AGCT	5 cut(s)	122, 261, 291, 350, 384
Alw21I	GWGCWC	1 cut(s)	404
AlwI	GGATC	1 cut(s)	9
ApeKI	GCWGC	3 cut(s)	69, 119, 258
AspS9I	GGNCC	1 cut(s)	369
AvaII	GGWCC	1 cut(s)	369
Bbv12I	GWGCWC	1 cut(s)	404
BbvCI	CCTCAGC	1 cut(s)	351
BbvI	GCAGC	3 cut(s)	81, 131, 270
BccI	CCATC	3 cut(s)	26, 43, 88
BciVI	GTATCC	1 cut(s)	326
BfmI	CTRYAG	1 cut(s)	25
BfuI	GTATCC	1 cut(s)	326
BglII	AGATCT	2 cut(s)	157, 282
BisI	GCNGC	3 cut(s)	70, 120, 259
BlsI	GCNGC	3 cut(s)	71, 121, 260
Bme18I	GGWCC	1 cut(s)	369
BmgT120I	GGNCC	1 cut(s)	369
BmiI	GGNNCC	1 cut(s)	370
BpmI	CTGGAG	1 cut(s)	307
Bpu10I	CCTNAGC	1 cut(s)	351
BpuEI	CTTGAG	1 cut(s)	146
Bse1I	ACTGG	1 cut(s)	190
BseGI	GGATG	1 cut(s)	269
BseMII	CTCAG	1 cut(s)	342
BseNI	ACTGG	1 cut(s)	190
BseRI	GAGGAG	1 cut(s)	368
BseXI	GCAGC	3 cut(s)	81, 131, 270
BsiHKAI	GWGCWC	1 cut(s)	404
BslFI	GGGAC	1 cut(s)	280
BsmFI	GGGAC	1 cut(s)	280
Bsp1286I	GDGCHC	1 cut(s)	404
Bsp143I	GATC	4 cut(s)	14, 157, 240, 282
BspCNI	CTCAG	1 cut(s)	343
BspLI	GGNNCC	1 cut(s)	370
BspPI	GGATC	1 cut(s)	9
BsrI	ACTGG	1 cut(s)	190
BssMI	GATC	4 cut(s)	14, 157, 240, 282
Bst4CI	ACNGT	1 cut(s)	173
Bst6I	CTCTTC	1 cut(s)	314
BstC8I	GCNNGC	1 cut(s)	428
BstDEI	CTNAG	1 cut(s)	351
BstF5I	GGATG	1 cut(s)	269
BstKTI	GATC	4 cut(s)	17, 160, 243, 285
BstMBI	GATC	4 cut(s)	14, 157, 240, 282
BstMWI	GCNNNNNNNGC	1 cut(s)	258
BstSFI	CTRYAG	1 cut(s)	25
BstV1I	GCAGC	3 cut(s)	81, 131, 270
BstX2I	RGATCY	3 cut(s)	14, 157, 282
BstYI	RGATCY	3 cut(s)	14, 157, 282
BsuI	GTATCC	1 cut(s)	326
BtsCI	GGATG	1 cut(s)	269
BtsIMutI	CAGTG	1 cut(s)	178
Cac8I	GCNNGC	1 cut(s)	428
Cfr13I	GGNCC	1 cut(s)	369
Csp6I	GTAC	1 cut(s)	195
CviAII	CATG	1 cut(s)	151
CviJI	RGCY	8 cut(s)	122, 189, 261, 291, 296, 350, 384, 426
CviKI_1	RGCY	8 cut(s)	122, 189, 261, 291, 296, 350, 384, 426
CviQI	GTAC	1 cut(s)	195
DdeI	CTNAG	1 cut(s)	351
DpnI	GATC	4 cut(s)	16, 159, 242, 284
DpnII	GATC	4 cut(s)	14, 157, 240, 282
Eam1104I	CTCTTC	1 cut(s)	314
EarI	CTCTTC	1 cut(s)	314
Eco47I	GGWCC	1 cut(s)	369
EcoO109I	RGGNCCY	1 cut(s)	369
FaeI	CATG	1 cut(s)	154
FaiI	YATR	8 cut(s)	12, 63, 89, 108, 152, 183, 208, 423
FalI	AAGNNNNNCTT	2 cut(s)	245, 277
FaqI	GGGAC	1 cut(s)	280
FatI	CATG	1 cut(s)	150
FblI	GTMKAC	2 cut(s)	57, 102
Fnu4HI	GCNGC	3 cut(s)	70, 120, 259
FokI	GGATG	1 cut(s)	256
Fsp4HI	GCNGC	3 cut(s)	70, 120, 259
GluI	GCNGC	3 cut(s)	70, 120, 259
GsuI	CTGGAG	1 cut(s)	307
Hin1II	CATG	1 cut(s)	154
HincII	GTYRAC	1 cut(s)	178
HindII	GTYRAC	1 cut(s)	178
Hpy166II	GTNNAC	3 cut(s)	58, 103, 178
Hpy188I	TCNGA	1 cut(s)	222
Hpy188III	TCNNGA	3 cut(s)	163, 244, 286
Hpy8I	GTNNAC	3 cut(s)	58, 103, 178
HpyAV	CCTTC	1 cut(s)	382
HpyCH4III	ACNGT	1 cut(s)	173
HpyCH4V	TGCA	3 cut(s)	91, 206, 310
HpyF10VI	GCNNNNNNNGC	1 cut(s)	258
HpyF3I	CTNAG	1 cut(s)	351
Hsp92II	CATG	1 cut(s)	154
Kzo9I	GATC	4 cut(s)	14, 157, 240, 282
LmnI	GCTCC	2 cut(s)	127, 288
LpnPI	CCDG	8 cut(s)	37, 171, 177, 186, 271, 315, 315, 412
Lsp1109I	GCAGC	3 cut(s)	81, 131, 270
MaeIII	GTNAC	1 cut(s)	167
MalI	GATC	4 cut(s)	16, 159, 242, 284
MboI	GATC	4 cut(s)	14, 157, 240, 282
MboII	GAAGA	4 cut(s)	250, 328, 331, 370
MflI	RGATCY	3 cut(s)	14, 157, 282
MhlI	GDGCHC	1 cut(s)	404
MluCI	AATT	1 cut(s)	7
MnlI	CCTC	9 cut(s)	30, 46, 59, 75, 91, 104, 306, 315, 346
MseI	TTAA	3 cut(s)	228, 387, 396
MslI	CAYNNNNRTG	1 cut(s)	47
MspA1I	CMGCKG	1 cut(s)	350
MwoI	GCNNNNNNNGC	1 cut(s)	258
NdeII	GATC	4 cut(s)	14, 157, 240, 282
NlaIII	CATG	1 cut(s)	154
NlaIV	GGNNCC	1 cut(s)	370
PkrI	GCNGC	3 cut(s)	71, 121, 260
PpuMI	RGGWCCY	1 cut(s)	369
Psp5II	RGGWCCY	1 cut(s)	369
PspN4I	GGNNCC	1 cut(s)	370
PspPI	GGNCC	1 cut(s)	369
PspPPI	RGGWCCY	1 cut(s)	369
PsuI	RGATCY	3 cut(s)	14, 157, 282
PvuII	CAGCTG	1 cut(s)	350
RsaI	GTAC	1 cut(s)	196
RsaNI	GTAC	1 cut(s)	195
RseI	CAYNNNNRTG	1 cut(s)	47
SaqAI	TTAA	3 cut(s)	228, 387, 396
SatI	GCNGC	3 cut(s)	70, 120, 259
Sau3AI	GATC	4 cut(s)	14, 157, 240, 282
Sau96I	GGNCC	1 cut(s)	369
SduI	GDGCHC	1 cut(s)	404
SetI	ASST	8 cut(s)	57, 102, 124, 263, 293, 352, 386, 407
SfcI	CTRYAG	1 cut(s)	25
SinI	GGWCC	1 cut(s)	369
SmiMI	CAYNNNNRTG	1 cut(s)	47
SmlI	CTYRAG	1 cut(s)	161
SmoI	CTYRAG	1 cut(s)	161
Sse9I	AATT	1 cut(s)	7
TaaI	ACNGT	1 cut(s)	173
TasI	AATT	1 cut(s)	7
Tru1I	TTAA	3 cut(s)	228, 387, 396
Tru9I	TTAA	3 cut(s)	228, 387, 396
TscAI	CASTG	1 cut(s)	178
TseI	GCWGC	3 cut(s)	69, 119, 258
TspDTI	ATGAA	1 cut(s)	377
TspRI	CASTG	1 cut(s)	178
VpaK11BI	GGWCC	1 cut(s)	369
XcmI	CCANNNNNNNNNTGG	1 cut(s)	419
XmiI	GTMKAC	2 cut(s)	57, 102

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.