Rmu_sc0027677.1_g000003

Polyamine oxidase

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0027677.1
Physical Location & Seq
Reverse (-)
12732 .. 15276
2545 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0027677.1_g000003.1.cds

Sequence Viewer

Length: 1362 bp
atggctggtattgcagctgctcgtgctctccaagatgcatcattccaggttgtgctgttggagtctcgggatcgacttggtggtcgagttcacaccgattactcgtttggttttccgattgacttgggtgcatcatggttgcatggagtatgtaaagagaatcccttggctccattaattgggagactgggcttgcctttatatcgtaccagtggtgataactctgtgttgtatgatcacgacttagaaagctatgcactctttgatatggatgggaaacaagttcctcaagatttggttacaaaagttggtgtaagatttgaggaaattttaaaagagacagatgaggtaagaaaggaactctcagaagacatgtccatctcccgcgctttctcaattgtctttgaaaggaaaccagaattaaggttggaaggaatttcccataaggtactgcagtggtatttgtgccgaatggaaggctggtttgcagcagatgctgatacaatttcacttaaaagctgggatcaggaagaactgcttcctggtggtcatggtcttatggtcaggggttatcgccctgttataaacacccttgccaaaggtcttgacattcgcctgagccacagggtgacaaaaattttgaggcgatataatggtgtgatggtaacagtagaggatgggagatcatttgttgcagatgctgcaattattgctgttcctcttggtgtgcttaaggcaaataccataaagtttgagccaaagctacccgactggaaggaagcagccattgctgaccttggagtgggaattgagaataagatagtgttgcactttgagaaggtgttctggccgaatgtggagtttttaggagtggttgcggagacatcttactgttgcagctactttctaaatcttcacaaggcaactggtcactctgtgcttgtttatatgcctgcagggcagctggccagagacattgagaaaatgtccgatgaagaggctgctaattttgcatatatgcaactcaagaagatccttccagatgcttctgatccgattcattttcttgtttctcactggggaacagatataaattcccttgggtcctatagctatgatatggtaggcaaaccccatgatctgtatgagaagctaagggtcccggtagataaccttttctttgctggggaggcaacaagcgtggacttcccaggttctgtgcatggtgcattcgctactggagcaatggccgctgaagactgcaggatgcgtgttctggagcgatacggtgagttggatttgttcgagccagtcatgggtgaggaggtcatgtctatcccaattcagatctcccgcctgtaa

Protein Analysis

453

Amino Acids

50.61

Weight (kDa)

5.27

Isoelectric Point (pI)

32.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 584
AasI GACNNNNNNGTC 1 cut(s) 81
AccB7I CCANNNNNTGG 1 cut(s) 179
AccII CGCG 1 cut(s) 387
AciI CCGC 4 cut(s) 385, 878, 1251, 1354
AclWI GGATC 4 cut(s) 78, 531, 1027, 1046
AcoI YGGCCR 3 cut(s) 848, 966, 1248
AcsI RAATTY 4 cut(s) 327, 435, 636, 1093
AcuI CTGAAG 1 cut(s) 1275
AdeI CACNNNGTG 2 cut(s) 628, 937
AfaI GTAC 2 cut(s) 208, 450
AfiI CCNNNNNNNGG 3 cut(s) 179, 802, 1316
AflII CTTAAG 1 cut(s) 731
AflIII ACRYGT 1 cut(s) 372
AgsI TTSAA 1 cut(s) 407
AjnI CCWGG 3 cut(s) 45, 541, 1210
AluBI AGCT 8 cut(s) 17, 252, 519, 763, 900, 964, 1113, 1153
AluI AGCT 8 cut(s) 17, 252, 519, 763, 900, 964, 1113, 1153
Alw21I GWGCWC 1 cut(s) 28
Alw26I GTCTC 5 cut(s) 69, 178, 332, 875, 966
AlwI GGATC 4 cut(s) 78, 531, 1027, 1046
AlwNI CAGNNNCTG 3 cut(s) 497, 701, 1217
Ama87I CYCGRG 1 cut(s) 66
AoxI GGCC 3 cut(s) 848, 966, 1248
ApeKI GCWGC 8 cut(s) 14, 17, 488, 701, 782, 897, 961, 1001
ApoI RAATTY 4 cut(s) 327, 435, 636, 1093
ArsI GACNNNNNNTTYG 2 cut(s) 622, 654
AseI ATTAAT 1 cut(s) 176
Asp700I GAANNNNTTC 2 cut(s) 537, 842
AspLEI GCGC 1 cut(s) 389
AspS9I GGNCC 2 cut(s) 1104, 1159
AsuC2I CCSGG 1 cut(s) 1163
AsuHPI GGTGA 4 cut(s) 227, 640, 1301, 1331
AvaI CYCGRG 1 cut(s) 66
AvaII GGWCC 2 cut(s) 1104, 1159
BaeI ACNNNNGTAYC 2 cut(s) 440, 473
BalI TGGCCA 1 cut(s) 968
BauI CACGAG 1 cut(s) 21
BbsI GAAGAC 2 cut(s) 375, 1263
Bbv12I GWGCWC 1 cut(s) 28
BbvI GCAGC 8 cut(s) 4, 26, 500, 688, 794, 909, 973, 988
BccI CCATC 4 cut(s) 266, 386, 655, 671
BciT130I CCWGG 3 cut(s) 47, 543, 1212
BclI TGATCA 1 cut(s) 235
BcnI CCSGG 1 cut(s) 1163
BcoDI GTCTC 5 cut(s) 69, 178, 332, 875, 966
BfmI CTRYAG 4 cut(s) 452, 954, 1108, 1261
BfrI CTTAAG 1 cut(s) 731
BglI GCCNNNNNGGC 1 cut(s) 958
BglII AGATCT 1 cut(s) 1347
BisI GCNGC 9 cut(s) 15, 18, 489, 702, 783, 898, 962, 1002, 1251
BlsI GCNGC 9 cut(s) 16, 19, 490, 703, 784, 899, 963, 1003, 1252
Bme1390I CCNGG 4 cut(s) 47, 543, 1163, 1212
Bme18I GGWCC 2 cut(s) 1104, 1159
BmeT110I CYCGRG 1 cut(s) 66
BmgT120I GGNCC 2 cut(s) 1104, 1159
BmiI GGNNCC 4 cut(s) 171, 1105, 1160, 1161
BmrFI CCNGG 4 cut(s) 47, 543, 1163, 1212
BmrI ACTGGG 2 cut(s) 197, 1087
BmsI GCATC 7 cut(s) 25, 47, 140, 484, 688, 1033, 1257
BmuI ACTGGG 2 cut(s) 197, 1087
BpiI GAAGAC 2 cut(s) 375, 1263
BpmI CTGGAG 2 cut(s) 1260, 1298
Bpu10I CCTNAGC 2 cut(s) 617, 1154
BpuEI CTTGAG 2 cut(s) 273, 1010
BpuMI CCSGG 1 cut(s) 1163
BsaJI CCNNGG 4 cut(s) 165, 796, 1099, 1210
BsaXI ACNNNNNCTCC 2 cut(s) 1316, 1346
Bsc4I CCNNNNNNNGG 3 cut(s) 179, 802, 1316
Bse1I ACTGG 7 cut(s) 192, 210, 776, 931, 1082, 1243, 1310
Bse3DI GCAATG 2 cut(s) 786, 1251
BseBI CCWGG 3 cut(s) 47, 543, 1212
BseDI CCNNGG 4 cut(s) 165, 796, 1099, 1210
BseGI GGATG 3 cut(s) 277, 682, 1272
BseLI CCNNNNNNNGG 3 cut(s) 179, 802, 1316
BseMI GCAATG 2 cut(s) 786, 1251
BseMII CTCAG 2 cut(s) 378, 608
BseNI ACTGG 7 cut(s) 192, 210, 776, 931, 1082, 1243, 1310
BseRI GAGGAG 1 cut(s) 1337
BseXI GCAGC 8 cut(s) 4, 26, 500, 688, 794, 909, 973, 988
BseYI CCCAGC 2 cut(s) 519, 1184
Bsh1236I CGCG 1 cut(s) 387
BshFI GGCC 3 cut(s) 850, 968, 1250
BsiHKAI GWGCWC 1 cut(s) 28
BsiHKCI CYCGRG 1 cut(s) 66
BsiSI CCGG 1 cut(s) 1163
BslFI GGGAC 1 cut(s) 1145
BslI CCNNNNNNNGG 3 cut(s) 179, 802, 1316
BsmAI GTCTC 5 cut(s) 69, 178, 332, 875, 966
BsmFI GGGAC 1 cut(s) 1145
BsmI GAATGC 1 cut(s) 1229
BsnI GGCC 3 cut(s) 850, 968, 1250
BsoBI CYCGRG 1 cut(s) 66
Bsp1286I GDGCHC 1 cut(s) 28
Bsp143I GATC 8 cut(s) 70, 235, 523, 683, 1032, 1051, 1138, 1347
BspACI CCGC 4 cut(s) 385, 878, 1251, 1354
BspANI GGCC 3 cut(s) 850, 968, 1250
BspCNI CTCAG 2 cut(s) 377, 609
BspFNI CGCG 1 cut(s) 387
BspLI GGNNCC 4 cut(s) 171, 1105, 1160, 1161
BspMAI CTGCAG 3 cut(s) 456, 958, 1265
BspPI GGATC 4 cut(s) 78, 531, 1027, 1046
BspTI CTTAAG 1 cut(s) 731
BsrDI GCAATG 2 cut(s) 786, 1251
BsrI ACTGG 7 cut(s) 192, 210, 776, 931, 1082, 1243, 1310
BssECI CCNNGG 4 cut(s) 165, 796, 1099, 1210
BssMI GATC 8 cut(s) 70, 235, 523, 683, 1032, 1051, 1138, 1347
BssSI CACGAG 1 cut(s) 21
BssT1I CCWWGG 3 cut(s) 165, 796, 1099
Bst2BI CACGAG 1 cut(s) 21
Bst2UI CCWGG 3 cut(s) 47, 543, 1212
Bst4CI ACNGT 3 cut(s) 670, 893, 1289
Bst6I CTCTTC 1 cut(s) 990
BstAFI CTTAAG 1 cut(s) 731
BstAPI GCANNNNNTGC 4 cut(s) 494, 701, 710, 788
BstC8I GCNNGC 3 cut(s) 194, 954, 966
BstDEI CTNAG 4 cut(s) 244, 364, 617, 1154
BstF5I GGATG 3 cut(s) 277, 682, 1272
BstFNI CGCG 1 cut(s) 387
BstHHI GCGC 1 cut(s) 389
BstKTI GATC 8 cut(s) 73, 238, 526, 686, 1035, 1054, 1141, 1350
BstMAI GTCTC 5 cut(s) 69, 178, 332, 875, 966
BstMBI GATC 8 cut(s) 70, 235, 523, 683, 1032, 1051, 1138, 1347
BstNI CCWGG 3 cut(s) 47, 543, 1212
BstNSI RCATGY 1 cut(s) 376
BstSCI CCNGG 4 cut(s) 45, 541, 1161, 1210
BstSFI CTRYAG 4 cut(s) 452, 954, 1108, 1261
BstUI CGCG 1 cut(s) 387
BstV1I GCAGC 8 cut(s) 4, 26, 500, 688, 794, 909, 973, 988
BstV2I GAAGAC 2 cut(s) 375, 1263
BstX2I RGATCY 2 cut(s) 1032, 1347
BstYI RGATCY 2 cut(s) 1032, 1347
BsuRI GGCC 3 cut(s) 850, 968, 1250
BtsCI GGATG 3 cut(s) 277, 682, 1272
BtsI GCAGTG 1 cut(s) 461
BtsIMutI CAGTG 3 cut(s) 217, 461, 1075
Cac8I GCNNGC 3 cut(s) 194, 954, 966
CaiI CAGNNNCTG 3 cut(s) 497, 701, 1217
CfoI GCGC 1 cut(s) 389
Cfr13I GGNCC 2 cut(s) 1104, 1159
Csp6I GTAC 2 cut(s) 207, 449
CspCI CAANNNNNGTGG 2 cut(s) 1182, 1217
CviAII CATG 8 cut(s) 135, 143, 373, 551, 1136, 1223, 1315, 1330
CviQI GTAC 2 cut(s) 207, 449
DdeI CTNAG 4 cut(s) 244, 364, 617, 1154
DpnI GATC 8 cut(s) 72, 237, 525, 685, 1034, 1053, 1140, 1349
DpnII GATC 8 cut(s) 70, 235, 523, 683, 1032, 1051, 1138, 1347
DraI TTTAAA 1 cut(s) 333
DraIII CACNNNGTG 2 cut(s) 628, 937
DrdI GACNNNNNNGTC 1 cut(s) 81
DseDI GACNNNNNNGTC 1 cut(s) 81
EaeI YGGCCR 3 cut(s) 848, 966, 1248
Eam1104I CTCTTC 1 cut(s) 990
EarI CTCTTC 1 cut(s) 990
Eco130I CCWWGG 3 cut(s) 165, 796, 1099
Eco47I GGWCC 2 cut(s) 1104, 1159
Eco57I CTGAAG 1 cut(s) 1275
Eco88I CYCGRG 1 cut(s) 66
EcoO109I RGGNCCY 2 cut(s) 1104, 1159
EcoRII CCWGG 3 cut(s) 45, 541, 1210
EcoT14I CCWWGG 3 cut(s) 165, 796, 1099
EcoT22I ATGCAT 1 cut(s) 40
ErhI CCWWGG 3 cut(s) 165, 796, 1099
FaeI CATG 8 cut(s) 138, 146, 376, 554, 1139, 1226, 1318, 1333
FalI AAGNNNNNCTT 2 cut(s) 522, 554
FaqI GGGAC 1 cut(s) 1145
FatI CATG 8 cut(s) 134, 142, 372, 550, 1135, 1222, 1314, 1329
FauI CCCGC 1 cut(s) 392
FbaI TGATCA 1 cut(s) 235
Fnu4HI GCNGC 9 cut(s) 15, 18, 489, 702, 783, 898, 962, 1002, 1251
FokI GGATG 3 cut(s) 284, 689, 1279
Fsp4HI GCNGC 9 cut(s) 15, 18, 489, 702, 783, 898, 962, 1002, 1251
GlaI GCGC 1 cut(s) 388
GluI GCNGC 9 cut(s) 15, 18, 489, 702, 783, 898, 962, 1002, 1251
GsaI CCCAGC 2 cut(s) 523, 1188
GsuI CTGGAG 2 cut(s) 1260, 1298
HaeIII GGCC 3 cut(s) 850, 968, 1250
HapII CCGG 1 cut(s) 1163
HhaI GCGC 1 cut(s) 389
Hin1II CATG 8 cut(s) 138, 146, 376, 554, 1139, 1226, 1318, 1333
Hin6I GCGC 1 cut(s) 387
HinP1I GCGC 1 cut(s) 387
HinfI GANTC 3 cut(s) 62, 160, 1057
HpaII CCGG 1 cut(s) 1163
HphI GGTGA 4 cut(s) 227, 640, 1301, 1331
Hpy166II GTNNAC 2 cut(s) 91, 1204
Hpy188I TCNGA 6 cut(s) 117, 367, 991, 1051, 1056, 1347
Hpy188III TCNNGA 8 cut(s) 68, 239, 290, 527, 605, 1027, 1040, 1277
Hpy8I GTNNAC 2 cut(s) 91, 1204
HpyAV CCTTC 5 cut(s) 425, 470, 769, 832, 1046
HpyCH4III ACNGT 3 cut(s) 670, 893, 1289
HpyF3I CTNAG 4 cut(s) 244, 364, 617, 1154
Hsp92II CATG 8 cut(s) 138, 146, 376, 554, 1139, 1226, 1318, 1333
HspAI GCGC 1 cut(s) 387
KflI GGGWCCC 1 cut(s) 1159
Ksp22I TGATCA 1 cut(s) 235
Kzo9I GATC 8 cut(s) 70, 235, 523, 683, 1032, 1051, 1138, 1347
LmnI GCTCC 3 cut(s) 175, 1241, 1279
Lsp1109I GCAGC 8 cut(s) 4, 26, 500, 688, 794, 909, 973, 988
LweI GCATC 7 cut(s) 25, 47, 140, 484, 688, 1033, 1257
MaeIII GTNAC 4 cut(s) 298, 628, 664, 929
MalI GATC 8 cut(s) 72, 237, 525, 685, 1034, 1053, 1140, 1349
MboI GATC 8 cut(s) 70, 235, 523, 683, 1032, 1051, 1138, 1347
MboII GAAGA 6 cut(s) 380, 542, 905, 1007, 1042, 1268
MfeI CAATTG 1 cut(s) 396
MflI RGATCY 2 cut(s) 1032, 1347
MhlI GDGCHC 1 cut(s) 28
MlsI TGGCCA 1 cut(s) 968
MluNI TGGCCA 1 cut(s) 968
MlyI GAGTC 1 cut(s) 71
MmeI TCCRAC 3 cut(s) 39, 408, 1275
Mox20I TGGCCA 1 cut(s) 968
Mph1103I ATGCAT 1 cut(s) 40
MroXI GAANNNNTTC 2 cut(s) 537, 842
MscI TGGCCA 1 cut(s) 968
MseI TTAA 5 cut(s) 176, 332, 422, 513, 732
Msp20I TGGCCA 1 cut(s) 968
MspA1I CMGCKG 3 cut(s) 17, 964, 1253
MspCI CTTAAG 1 cut(s) 731
MspI CCGG 1 cut(s) 1163
MspR9I CCNGG 4 cut(s) 47, 543, 1163, 1212
MunI CAATTG 1 cut(s) 396
Mva1269I GAATGC 1 cut(s) 1229
MvaI CCWGG 3 cut(s) 47, 543, 1212
MvnI CGCG 1 cut(s) 387
NciI CCSGG 1 cut(s) 1163
NdeII GATC 8 cut(s) 70, 235, 523, 683, 1032, 1051, 1138, 1347
NlaIII CATG 8 cut(s) 138, 146, 376, 554, 1139, 1226, 1318, 1333
NlaIV GGNNCC 4 cut(s) 171, 1105, 1160, 1161
NmuCI GTSAC 2 cut(s) 628, 929
NsiI ATGCAT 1 cut(s) 40
NspI RCATGY 1 cut(s) 376
PciI ACATGT 1 cut(s) 372
PctI GAATGC 1 cut(s) 1229
PdmI GAANNNNTTC 2 cut(s) 537, 842
PfeI GAWTC 2 cut(s) 160, 1057
PflMI CCANNNNNTGG 1 cut(s) 179
PkrI GCNGC 9 cut(s) 16, 19, 490, 703, 784, 899, 963, 1003, 1252
PleI GAGTC 1 cut(s) 70
PpsI GAGTC 1 cut(s) 70
PpuMI RGGWCCY 2 cut(s) 1104, 1159
PscI ACATGT 1 cut(s) 372
PshBI ATTAAT 1 cut(s) 176
PsiI TTATAA 1 cut(s) 584
Psp5II RGGWCCY 2 cut(s) 1104, 1159
Psp6I CCWGG 3 cut(s) 45, 541, 1210
PspFI CCCAGC 2 cut(s) 519, 1184
PspGI CCWGG 3 cut(s) 45, 541, 1210
PspN4I GGNNCC 4 cut(s) 171, 1105, 1160, 1161
PspPI GGNCC 2 cut(s) 1104, 1159
PspPPI RGGWCCY 2 cut(s) 1104, 1159
PstI CTGCAG 3 cut(s) 456, 958, 1265
PstNI CAGNNNCTG 3 cut(s) 497, 701, 1217
PsuI RGATCY 2 cut(s) 1032, 1347
PvuII CAGCTG 2 cut(s) 17, 964
RsaI GTAC 2 cut(s) 208, 450
RsaNI GTAC 2 cut(s) 207, 449
SaqAI TTAA 5 cut(s) 176, 332, 422, 513, 732
SatI GCNGC 9 cut(s) 15, 18, 489, 702, 783, 898, 962, 1002, 1251
Sau3AI GATC 8 cut(s) 70, 235, 523, 683, 1032, 1051, 1138, 1347
Sau96I GGNCC 2 cut(s) 1104, 1159
SbfI CCTGCAGG 1 cut(s) 958
SchI GAGTC 1 cut(s) 71
ScrFI CCNGG 4 cut(s) 47, 543, 1163, 1212
SdaI CCTGCAGG 1 cut(s) 958
SduI GDGCHC 1 cut(s) 28
SfaNI GCATC 7 cut(s) 25, 47, 140, 484, 688, 1033, 1257
SfcI CTRYAG 4 cut(s) 452, 954, 1108, 1261
SinI GGWCC 2 cut(s) 1104, 1159
SmlI CTYRAG 3 cut(s) 288, 731, 1025
SmoI CTYRAG 3 cut(s) 288, 731, 1025
Sse8387I CCTGCAGG 1 cut(s) 958
SsiI CCGC 4 cut(s) 385, 878, 1251, 1354
StyD4I CCNGG 4 cut(s) 45, 541, 1161, 1210
StyI CCWWGG 3 cut(s) 165, 796, 1099
TaaI ACNGT 3 cut(s) 670, 893, 1289
TaqI TCGA 3 cut(s) 73, 85, 1305
TauI GCSGC 1 cut(s) 1253
TfiI GAWTC 2 cut(s) 160, 1057
Tru1I TTAA 5 cut(s) 176, 332, 422, 513, 732
Tru9I TTAA 5 cut(s) 176, 332, 422, 513, 732
TscAI CASTG 3 cut(s) 217, 461, 1082
TseFI GTSAC 2 cut(s) 628, 929
TseI GCWGC 8 cut(s) 14, 17, 488, 701, 782, 897, 961, 1001
Tsp45I GTSAC 2 cut(s) 628, 929
TspDTI ATGAA 2 cut(s) 1008, 1049
TspRI CASTG 3 cut(s) 217, 461, 1082
Van91I CCANNNNNTGG 1 cut(s) 179
Vha464I CTTAAG 1 cut(s) 731
VpaK11BI GGWCC 2 cut(s) 1104, 1159
VspI ATTAAT 1 cut(s) 176
XapI RAATTY 4 cut(s) 327, 435, 636, 1093
XceI RCATGY 1 cut(s) 376
XmnI GAANNNNTTC 2 cut(s) 537, 842
Zsp2I ATGCAT 1 cut(s) 40
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.