Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0014961

Physical Location & Seq

Genomic Coordinates Reverse (-)

22467114 .. 22469623

Gene Structure 2510 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G60800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGCATAGATCTGGTACAACAATGGCGTGGAACGTATTCAAGTTCTGTACTGCCTTACGAGGTCTTGGATCGATCATGATCCTTTTGGTTCTTGGTGTTGTCGGTGTTACTTATTACGCTGTCGTTTTGACTAATTATGGTCCTGCACTCTCTCAAGGTGGCCTTGATTCTCTTGCTGCTCTCACTATCTTAATCCTCTTCCATTTCCTCCTGGCAATGCTTTTGTGGAGCTATTTCTCAGTGGTTTTTACTGATCCTGGTGTTGTGCCTCCTAATTGGAGACCATCTACTGATGAAGAAAGAGGTGAATCTGATCCGTTAAATAGTTTGGACTTTGTTGGTTTACAATCCGATTCTTCTTCTTCAAACCCAAGAGTTCGGTTTTGTCGGAAGTGCAATCAACTAAAACCTTCTCGTTGTCATCATTGTTCTGTTTGTGGTCGGTGTGTGTTGAAGATGGATCACCATTGTGTTTGGGTTGTTAACTGTGTAGGAGCACTGAACTATAAGTATTTTCTTCTTTTCTTGTTCTACACATTTTTAGAGACGACCCTTGTGACTTTGGTTCTTATGCCGCACTTCATTGCATTCTTTAGTGATGAAGAAATACCTGGAACCCCAGGCACTCTTGCTACTACTTTTCTTGCATTTGTTTTGAACTTGGCATTTGCGTTGAGCGTGATGGGTTTCTTAATTATGCATATTTCCTTGGTAGCTGGCAATACCACAACTATAGAGGCATATGAGAAGAAAACCACTACAAAATGGCGGTATGACCTCGGTAAAAAGAAAAACTTTGAACAGGTATTTGGAATGGATAAGAGATACTGGTTAATCCCAGGATACACAGAAGAAGATCTAAGGCGAATGCCGGAGCTGCAGGGACTTGAATACCCTTCGAAACCCGACTTTGATTCCCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000138 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005794 GO:0005795 GO:0005802 GO:0007275 GO:0007568 GO:0008150 GO:0010150 GO:0012505 GO:0016417 GO:0016740 GO:0016746 GO:0016747 GO:0019222 GO:0019707 GO:0031323 GO:0031410 GO:0031982 GO:0031984 GO:0031985 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051239 GO:0065007 GO:0090693 GO:0097708 GO:0098791 GO:0099402 GO:0140096 GO:1900055 GO:2000024 GO:2000026 GO:2000377

KEGG Pathways

Metabolic & Signaling

ko00100 ko01100 ko01110 map00100 map01100 map01110

Pfam Domains

Protein Families

DHHC

Protein Analysis

307

Amino Acids

34.69

Weight (kDa)

7.06

Isoelectric Point (pI)

44.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DHHC	PF01529	126 - 250	2.6e-38	DHHC palmitoyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014961)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60800
fragaria_vesca	FvH4_7g11740
malus_domestica	MD02G1205100.v1.1 MD07G1121600.v1.1
prunus_persica	Prupe.2G144500_v2.0.a1
pyrus_communis	pycom07g10370
rosa_chinensis	RchiOBHm_Chr1g0350251
rosa_laevigata	RLG00000028496
rosa_multiflora	Rmu_sc0001037.1_g000009
rosa_roxburghii	Rroxscaffold_4G00304950
rosa_rugosa	Rorug01G0210300 Rorug01G0210400
rosa_samantha	Rh1AG225400 Rh1BG193300
rosa_wichuraiana	Rw0G018800 Rw1G019380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	575, 769
AclWI	GGATC	5 cut(s)	73, 76, 248, 308, 468
AfaI	GTAC	2 cut(s)	16, 49
AgsI	TTSAA	6 cut(s)	40, 366, 454, 658, 800, 890
AjnI	CCWGG	5 cut(s)	210, 256, 610, 619, 838
AjuI	GAANNNNNNNTTGG	2 cut(s)	792, 824
AleI	CACNNNNGTG	1 cut(s)	468
AluBI	AGCT	3 cut(s)	231, 716, 877
AluI	AGCT	3 cut(s)	231, 716, 877
Alw21I	GWGCWC	1 cut(s)	499
Alw26I	GTCTC	2 cut(s)	274, 539
AlwI	GGATC	5 cut(s)	73, 76, 248, 308, 468
AoxI	GGCC	1 cut(s)	160
ApeKI	GCWGC	2 cut(s)	176, 877
Asp700I	GAANNNNTTC	1 cut(s)	35
AspS9I	GGNCC	1 cut(s)	140
AsuHPI	GGTGA	2 cut(s)	317, 455
AsuII	TTCGAA	1 cut(s)	899
AvaII	GGWCC	1 cut(s)	140
Bbv12I	GWGCWC	1 cut(s)	499
BbvI	GCAGC	2 cut(s)	163, 864
BccI	CCATC	3 cut(s)	292, 451, 676
BciT130I	CCWGG	5 cut(s)	212, 258, 612, 621, 840
BciVI	GTATCC	1 cut(s)	836
BcoDI	GTCTC	2 cut(s)	274, 539
BfmI	CTRYAG	2 cut(s)	732, 878
BfuI	GTATCC	1 cut(s)	836
BglII	AGATCT	2 cut(s)	8, 856
BisI	GCNGC	3 cut(s)	177, 575, 878
BlsI	GCNGC	3 cut(s)	178, 576, 879
Bme1390I	CCNGG	5 cut(s)	212, 258, 612, 621, 840
Bme18I	GGWCC	1 cut(s)	140
BmgT120I	GGNCC	1 cut(s)	140
BmiI	GGNNCC	1 cut(s)	616
BmrFI	CCNGG	5 cut(s)	212, 258, 612, 621, 840
BmrI	ACTGGG	1 cut(s)	913
BmuI	ACTGGG	1 cut(s)	913
Bpu14I	TTCGAA	1 cut(s)	899
BpuEI	CTTGAG	1 cut(s)	138
Bsa29I	ATCGAT	1 cut(s)	71
BsaBI	GATNNNNATC	1 cut(s)	77
BsaI	GGTCTC	1 cut(s)	274
BsaJI	CCNNGG	4 cut(s)	619, 708, 778, 838
Bse1I	ACTGG	2 cut(s)	833, 919
Bse3DI	GCAATG	2 cut(s)	222, 582
Bse8I	GATNNNNATC	1 cut(s)	77
BseBI	CCWGG	5 cut(s)	212, 258, 612, 621, 840
BseCI	ATCGAT	1 cut(s)	71
BseDI	CCNNGG	4 cut(s)	619, 708, 778, 838
BseJI	GATNNNNATC	1 cut(s)	77
BseMI	GCAATG	2 cut(s)	222, 582
BseMII	CTCAG	1 cut(s)	252
BseNI	ACTGG	2 cut(s)	833, 919
BseXI	GCAGC	2 cut(s)	163, 864
BsgI	GTGCAG	1 cut(s)	129
BshFI	GGCC	1 cut(s)	162
BshVI	ATCGAT	1 cut(s)	71
BsiHKAI	GWGCWC	1 cut(s)	499
BsiSI	CCGG	1 cut(s)	872
BslFI	GGGAC	1 cut(s)	897
BsmAI	GTCTC	2 cut(s)	274, 539
BsmBI	CGTCTC	1 cut(s)	539
BsmFI	GGGAC	1 cut(s)	897
BsmI	GAATGC	2 cut(s)	587, 873
BsnI	GGCC	1 cut(s)	162
Bso31I	GGTCTC	1 cut(s)	274
Bsp119I	TTCGAA	1 cut(s)	899
Bsp1286I	GDGCHC	1 cut(s)	499
Bsp143I	GATC	8 cut(s)	8, 68, 72, 78, 253, 313, 460, 856
BspACI	CCGC	2 cut(s)	575, 769
BspANI	GGCC	1 cut(s)	162
BspCNI	CTCAG	1 cut(s)	251
BspDI	ATCGAT	1 cut(s)	71
BspHI	TCATGA	1 cut(s)	75
BspLI	GGNNCC	1 cut(s)	616
BspMAI	CTGCAG	1 cut(s)	882
BspPI	GGATC	5 cut(s)	73, 76, 248, 308, 468
BspT104I	TTCGAA	1 cut(s)	899
BspTNI	GGTCTC	1 cut(s)	274
BsrDI	GCAATG	2 cut(s)	222, 582
BsrI	ACTGG	2 cut(s)	833, 919
BssECI	CCNNGG	4 cut(s)	619, 708, 778, 838
BssMI	GATC	8 cut(s)	8, 68, 72, 78, 253, 313, 460, 856
BssT1I	CCWWGG	1 cut(s)	708
Bst2UI	CCWGG	5 cut(s)	212, 258, 612, 621, 840
Bst4CI	ACNGT	1 cut(s)	488
Bst6I	CTCTTC	1 cut(s)	203
BstBI	TTCGAA	1 cut(s)	899
BstC8I	GCNNGC	1 cut(s)	718
BstDEI	CTNAG	2 cut(s)	238, 860
BstKTI	GATC	8 cut(s)	11, 71, 75, 81, 256, 316, 463, 859
BstMAI	GTCTC	2 cut(s)	274, 539
BstMBI	GATC	8 cut(s)	8, 68, 72, 78, 253, 313, 460, 856
BstMWI	GCNNNNNNNGC	1 cut(s)	877
BstNI	CCWGG	5 cut(s)	212, 258, 612, 621, 840
BstSCI	CCNGG	5 cut(s)	210, 256, 610, 619, 838
BstSFI	CTRYAG	2 cut(s)	732, 878
BstV1I	GCAGC	2 cut(s)	163, 864
BstX2I	RGATCY	2 cut(s)	8, 856
BstYI	RGATCY	2 cut(s)	8, 856
Bsu15I	ATCGAT	1 cut(s)	71
BsuI	GTATCC	1 cut(s)	836
BsuRI	GGCC	1 cut(s)	162
BsuTUI	ATCGAT	1 cut(s)	71
BtsIMutI	CAGTG	2 cut(s)	246, 497
Cac8I	GCNNGC	1 cut(s)	718
CciI	TCATGA	1 cut(s)	75
Cfr13I	GGNCC	1 cut(s)	140
ClaI	ATCGAT	1 cut(s)	71
Csp6I	GTAC	2 cut(s)	15, 48
CviAII	CATG	1 cut(s)	76
CviJI	RGCY	4 cut(s)	162, 231, 716, 877
CviKI_1	RGCY	4 cut(s)	162, 231, 716, 877
CviQI	GTAC	2 cut(s)	15, 48
DdeI	CTNAG	2 cut(s)	238, 860
DpnI	GATC	8 cut(s)	10, 70, 74, 80, 255, 315, 462, 858
DpnII	GATC	8 cut(s)	8, 68, 72, 78, 253, 313, 460, 856
Eam1104I	CTCTTC	1 cut(s)	203
EarI	CTCTTC	1 cut(s)	203
Eco130I	CCWWGG	1 cut(s)	708
Eco31I	GGTCTC	1 cut(s)	274
Eco47I	GGWCC	1 cut(s)	140
EcoRII	CCWGG	5 cut(s)	210, 256, 610, 619, 838
EcoT14I	CCWWGG	1 cut(s)	708
EcoT22I	ATGCAT	2 cut(s)	6, 702
ErhI	CCWWGG	1 cut(s)	708
Esp3I	CGTCTC	1 cut(s)	539
FaeI	CATG	1 cut(s)	79
FalI	AAGNNNNNCTT	4 cut(s)	147, 179, 779, 811
FaqI	GGGAC	1 cut(s)	897
FatI	CATG	1 cut(s)	75
FauNDI	CATATG	1 cut(s)	742
Fnu4HI	GCNGC	3 cut(s)	177, 575, 878
Fsp4HI	GCNGC	3 cut(s)	177, 575, 878
GluI	GCNGC	3 cut(s)	177, 575, 878
HaeIII	GGCC	1 cut(s)	162
HapII	CCGG	1 cut(s)	872
Hin1II	CATG	1 cut(s)	79
HincII	GTYRAC	1 cut(s)	484
HindII	GTYRAC	1 cut(s)	484
HinfI	GANTC	4 cut(s)	167, 308, 353, 914
HpaI	GTTAAC	1 cut(s)	484
HpaII	CCGG	1 cut(s)	872
HphI	GGTGA	2 cut(s)	317, 455
Hpy166II	GTNNAC	2 cut(s)	344, 484
Hpy188I	TCNGA	3 cut(s)	313, 352, 390
Hpy188III	TCNNGA	1 cut(s)	76
Hpy8I	GTNNAC	2 cut(s)	344, 484
HpyAV	CCTTC	2 cut(s)	420, 906
HpyCH4III	ACNGT	1 cut(s)	488
HpyCH4IV	ACGT	1 cut(s)	33
HpyCH4V	TGCA	7 cut(s)	4, 146, 396, 587, 647, 700, 880
HpyF10VI	GCNNNNNNNGC	1 cut(s)	877
HpyF3I	CTNAG	2 cut(s)	238, 860
HpySE526I	ACGT	1 cut(s)	33
Hsp92II	CATG	1 cut(s)	79
KspAI	GTTAAC	1 cut(s)	484
Kzo9I	GATC	8 cut(s)	8, 68, 72, 78, 253, 313, 460, 856
LmnI	GCTCC	3 cut(s)	228, 494, 874
Lsp1109I	GCAGC	2 cut(s)	163, 864
MaeII	ACGT	1 cut(s)	33
MaeIII	GTNAC	2 cut(s)	106, 556
MalI	GATC	8 cut(s)	10, 70, 74, 80, 255, 315, 462, 858
MboI	GATC	8 cut(s)	8, 68, 72, 78, 253, 313, 460, 856
MflI	RGATCY	2 cut(s)	8, 856
MhlI	GDGCHC	1 cut(s)	499
MluCI	AATT	3 cut(s)	133, 274, 693
MmeI	TCCRAC	1 cut(s)	368
MnlI	CCTC	7 cut(s)	53, 206, 218, 279, 296, 730, 788
Mph1103I	ATGCAT	2 cut(s)	6, 702
MroXI	GAANNNNTTC	1 cut(s)	35
MseI	TTAA	5 cut(s)	191, 320, 483, 692, 833
MslI	CAYNNNNRTG	1 cut(s)	468
MspI	CCGG	1 cut(s)	872
MspR9I	CCNGG	5 cut(s)	212, 258, 612, 621, 840
Mva1269I	GAATGC	2 cut(s)	587, 873
MvaI	CCWGG	5 cut(s)	212, 258, 612, 621, 840
MwoI	GCNNNNNNNGC	1 cut(s)	877
NdeI	CATATG	1 cut(s)	742
NdeII	GATC	8 cut(s)	8, 68, 72, 78, 253, 313, 460, 856
NlaIII	CATG	1 cut(s)	79
NlaIV	GGNNCC	1 cut(s)	616
NmuCI	GTSAC	1 cut(s)	556
NsiI	ATGCAT	2 cut(s)	6, 702
NspV	TTCGAA	1 cut(s)	899
OliI	CACNNNNGTG	1 cut(s)	468
PagI	TCATGA	1 cut(s)	75
PctI	GAATGC	2 cut(s)	587, 873
PdmI	GAANNNNTTC	1 cut(s)	35
PfeI	GAWTC	4 cut(s)	167, 308, 353, 914
PkrI	GCNGC	3 cut(s)	178, 576, 879
Psp6I	CCWGG	5 cut(s)	210, 256, 610, 619, 838
PspGI	CCWGG	5 cut(s)	210, 256, 610, 619, 838
PspN4I	GGNNCC	1 cut(s)	616
PspPI	GGNCC	1 cut(s)	140
PstI	CTGCAG	1 cut(s)	882
PsuI	RGATCY	2 cut(s)	8, 856
RsaI	GTAC	2 cut(s)	16, 49
RsaNI	GTAC	2 cut(s)	15, 48
RseI	CAYNNNNRTG	1 cut(s)	468
SaqAI	TTAA	5 cut(s)	191, 320, 483, 692, 833
SatI	GCNGC	3 cut(s)	177, 575, 878
Sau3AI	GATC	8 cut(s)	8, 68, 72, 78, 253, 313, 460, 856
Sau96I	GGNCC	1 cut(s)	140
ScrFI	CCNGG	5 cut(s)	212, 258, 612, 621, 840
SduI	GDGCHC	1 cut(s)	499
SfcI	CTRYAG	2 cut(s)	732, 878
SfuI	TTCGAA	1 cut(s)	899
SinI	GGWCC	1 cut(s)	140
SmiMI	CAYNNNNRTG	1 cut(s)	468
SmlI	CTYRAG	1 cut(s)	153
SmoI	CTYRAG	1 cut(s)	153
Sse9I	AATT	3 cut(s)	133, 274, 693
SsiI	CCGC	2 cut(s)	575, 769
StyD4I	CCNGG	5 cut(s)	210, 256, 610, 619, 838
StyI	CCWWGG	1 cut(s)	708
TaaI	ACNGT	1 cut(s)	488
TaiI	ACGT	1 cut(s)	36
TaqI	TCGA	2 cut(s)	71, 899
TasI	AATT	3 cut(s)	133, 274, 693
TatI	WGTACW	1 cut(s)	47
TauI	GCSGC	1 cut(s)	577
TfiI	GAWTC	4 cut(s)	167, 308, 353, 914
Tru1I	TTAA	5 cut(s)	191, 320, 483, 692, 833
Tru9I	TTAA	5 cut(s)	191, 320, 483, 692, 833
TscAI	CASTG	2 cut(s)	246, 504
TseFI	GTSAC	1 cut(s)	556
TseI	GCWGC	2 cut(s)	176, 877
Tsp45I	GTSAC	1 cut(s)	556
TspDTI	ATGAA	3 cut(s)	309, 571, 615
TspGWI	ACGGA	1 cut(s)	306
TspRI	CASTG	2 cut(s)	246, 504
VpaK11BI	GGWCC	1 cut(s)	140
XmnI	GAANNNNTTC	1 cut(s)	35
Zsp2I	ATGCAT	2 cut(s)	6, 702

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.