Rorug01G0210300

Belongs to the DHHC palmitoyltransferase family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
Physical Location & Seq
Reverse (-)
29741507 .. 29742122
616 bp
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UTR
Exon/CDS
Intron
Rorug01G0210300.1

Sequence Viewer

Length: 288 bp
ATGGCCTCAACTTATGATGTCAATGTTGAGTTATCCTTGGCATCTTGTGTCTCCACATTCCTGTTGGATAGAAATTTGCTGCCCATGCCATCCTACCTTGGCTTAAGTACAGAAGATGCGAGTTACAAGGCTGTTGCAGATTTAAGCTACCCCATTCTATTGTTAATAACTCCATTTTCGTGGAAAAGCAAGGCACTACATGCCTACTTTACAGAGGAGATGTCTGCAACGGCAATGCTGAGGTTTCGGAATAAGTCCACATACCATCCTGATAATGGAATTATGTGA

Protein Analysis

95

Amino Acids

10.65

Weight (kDa)

5.49

Isoelectric Point (pI)

48.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014961)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G60800
fragaria_vesca FvH4_7g11740
malus_domestica MD02G1205100.v1.1 MD07G1121600.v1.1
prunus_persica Prupe.2G144500_v2.0.a1
pyrus_communis pycom07g10370
rosa_chinensis RchiOBHm_Chr1g0350251
rosa_laevigata RLG00000028496
rosa_multiflora Rmu_sc0001037.1_g000009
rosa_roxburghii Rroxscaffold_4G00304950
rosa_rugosa Rorug01G0210300 Rorug01G0210400
rosa_samantha Rh1AG225400 Rh1BG193300
rosa_wichuraiana Rw0G018800 Rw1G019380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 73
AfaI GTAC 1 cut(s) 109
AfiI CCNNNNNNNGG 1 cut(s) 275
AflII CTTAAG 1 cut(s) 103
AluBI AGCT 1 cut(s) 147
AluI AGCT 1 cut(s) 147
Alw26I GTCTC 1 cut(s) 55
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 1 cut(s) 79
ApoI RAATTY 1 cut(s) 73
BbvCI CCTCAGC 1 cut(s) 239
BbvI GCAGC 1 cut(s) 66
BccI CCATC 2 cut(s) 97, 273
BceAI ACGGC 1 cut(s) 246
BcoDI GTCTC 1 cut(s) 55
BfrI CTTAAG 1 cut(s) 103
BisI GCNGC 1 cut(s) 80
BlsI GCNGC 1 cut(s) 81
BmsI GCATC 2 cut(s) 50, 106
Bpu10I CCTNAGC 1 cut(s) 239
BsaJI CCNNGG 2 cut(s) 36, 97
Bsc4I CCNNNNNNNGG 1 cut(s) 275
Bse3DI GCAATG 1 cut(s) 240
BseDI CCNNGG 2 cut(s) 36, 97
BseGI GGATG 2 cut(s) 89, 265
BseLI CCNNNNNNNGG 1 cut(s) 275
BseMI GCAATG 1 cut(s) 240
BseMII CTCAG 1 cut(s) 230
BseRI GAGGAG 1 cut(s) 230
BseXI GCAGC 1 cut(s) 66
BshFI GGCC 1 cut(s) 5
BslI CCNNNNNNNGG 1 cut(s) 275
BsmAI GTCTC 1 cut(s) 55
BsnI GGCC 1 cut(s) 5
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 1 cut(s) 231
BspTI CTTAAG 1 cut(s) 103
BsrDI GCAATG 1 cut(s) 240
BssECI CCNNGG 2 cut(s) 36, 97
BssT1I CCWWGG 2 cut(s) 36, 97
BstAFI CTTAAG 1 cut(s) 103
BstAPI GCANNNNNTGC 1 cut(s) 200
BstDEI CTNAG 1 cut(s) 239
BstF5I GGATG 2 cut(s) 89, 265
BstMAI GTCTC 1 cut(s) 55
BstMWI GCNNNNNNNGC 2 cut(s) 85, 200
BstNSI RCATGY 1 cut(s) 203
BstV1I GCAGC 1 cut(s) 66
BstXI CCANNNNNNTGG 1 cut(s) 180
BsuRI GGCC 1 cut(s) 5
BtsCI GGATG 2 cut(s) 89, 265
Csp6I GTAC 1 cut(s) 108
CviAII CATG 2 cut(s) 85, 200
CviJI RGCY 4 cut(s) 5, 102, 131, 147
CviKI_1 RGCY 4 cut(s) 5, 102, 131, 147
CviQI GTAC 1 cut(s) 108
DdeI CTNAG 1 cut(s) 239
Eco130I CCWWGG 2 cut(s) 36, 97
EcoT14I CCWWGG 2 cut(s) 36, 97
ErhI CCWWGG 2 cut(s) 36, 97
FaeI CATG 2 cut(s) 88, 203
FaiI YATR 5 cut(s) 15, 86, 201, 262, 284
FatI CATG 2 cut(s) 84, 199
Fnu4HI GCNGC 1 cut(s) 80
FokI GGATG 2 cut(s) 76, 252
Fsp4HI GCNGC 1 cut(s) 80
GluI GCNGC 1 cut(s) 80
HaeIII GGCC 1 cut(s) 5
Hin1II CATG 2 cut(s) 88, 203
Hpy166II GTNNAC 1 cut(s) 258
Hpy188I TCNGA 1 cut(s) 249
Hpy188III TCNNGA 1 cut(s) 269
Hpy8I GTNNAC 1 cut(s) 258
HpyCH4V TGCA 2 cut(s) 137, 227
HpyF10VI GCNNNNNNNGC 2 cut(s) 85, 200
HpyF3I CTNAG 1 cut(s) 239
Hsp92II CATG 2 cut(s) 88, 203
LpnPI CCDG 2 cut(s) 74, 282
Lsp1109I GCAGC 1 cut(s) 66
LweI GCATC 2 cut(s) 50, 106
MaeIII GTNAC 1 cut(s) 122
MboII GAAGA 1 cut(s) 125
MluCI AATT 2 cut(s) 73, 279
MmeI TCCRAC 1 cut(s) 45
MnlI CCTC 3 cut(s) 16, 208, 234
MseI TTAA 3 cut(s) 104, 143, 164
MslI CAYNNNNRTG 1 cut(s) 178
MspCI CTTAAG 1 cut(s) 103
MwoI GCNNNNNNNGC 2 cut(s) 85, 200
NlaIII CATG 2 cut(s) 88, 203
NspI RCATGY 1 cut(s) 203
PkrI GCNGC 1 cut(s) 81
RsaI GTAC 1 cut(s) 109
RsaNI GTAC 1 cut(s) 108
RseI CAYNNNNRTG 1 cut(s) 178
SaqAI TTAA 3 cut(s) 104, 143, 164
SatI GCNGC 1 cut(s) 80
SetI ASST 3 cut(s) 99, 149, 245
SfaNI GCATC 2 cut(s) 50, 106
SmiMI CAYNNNNRTG 1 cut(s) 178
SmlI CTYRAG 1 cut(s) 103
SmoI CTYRAG 1 cut(s) 103
Sse9I AATT 2 cut(s) 73, 279
StyI CCWWGG 2 cut(s) 36, 97
TasI AATT 2 cut(s) 73, 279
TatI WGTACW 1 cut(s) 107
Tru1I TTAA 3 cut(s) 104, 143, 164
Tru9I TTAA 3 cut(s) 104, 143, 164
TseI GCWGC 1 cut(s) 79
Vha464I CTTAAG 1 cut(s) 103
XapI RAATTY 1 cut(s) 73
XceI RCATGY 1 cut(s) 203
XcmI CCANNNNNNNNNTGG 2 cut(s) 61, 272
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.