Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0014961

Physical Location & Seq

Genomic Coordinates Forward (+)

25591531 .. 25597160

Gene Structure 5630 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00304950.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGCATAGATCTGGAGCTGCCATGGCTTGGAATGTGTTCAAGTTCTGCACAGCTTTGCGGGGTCTGGGCTCGGTTATGATCCTCTTGGTTCTTGGAGTTGTGGGTGTGACGTATTACACTGTCGTTTTGACTAATTATGGCCCGGCTTTGTATGCTGGTGGGCTTGATTCTCTCATTGCTATTGTCGTTTTGATCTTGTTCCATTCTTTGTTGGTGATGCTACTATGGAGTTACTTTTCTGTTGTTTTGACGGATCCCGGTGGTGTGCCACCGAATTGGAGGCCTGCTGTTGATGAAGAAAGAGGGGAAGCTGACCCATTGAATGGTTCAGAATTTAGTGATTTGCAAACTGACCCATCAAATCAAAGAGTCCGGTATTGCCGGAAGTGCAACCAGTTGAAACCACCTCGTTGCCATCATTGCTCAGTTTGTGGGCGGTGTGTACTGAAAATGGATCACCATTGTGTATGGGTTGTTAATTGTGTTGGGGCCTTAAATTACAAATATTTTCTTCTTTTCTTGTTCTACACGTTCCTTGAGACAACTGTTGTAACTTTATGCTTGCTGCCACACTTCATTGCATTCTTTAGTGAAGGAGAAATACCTGGAACACCAGGGACCCTTGCAACTACTTTCCTTGCTTTTGTTTTGAATCTTGCATTTGCATTAAGCGTGCTGGGGTTTCTTATCATGCATATATCCTTGGTAGCTGCAAATACTACAACCATCGAGGCGTATGAGAAGAAAACCACTCCGAAATGGCGCTATGACCTTGGTCGAAAAAAGAATTTTGAACAGGTGTTTGGGACAGACAAGCTATACTGGTTCATCCCTGCTTATTCAGAAGAAGATTTGCGACGGATACCAGCGCTCCAGGGTCTCGAGTATCCATCTAAGCCTGAGTTTGACTCCCAAGACTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000138 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005794 GO:0005795 GO:0005802 GO:0007275 GO:0007568 GO:0008150 GO:0010150 GO:0012505 GO:0016417 GO:0016740 GO:0016746 GO:0016747 GO:0019222 GO:0019707 GO:0031323 GO:0031410 GO:0031982 GO:0031984 GO:0031985 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051239 GO:0065007 GO:0090693 GO:0097708 GO:0098791 GO:0099402 GO:0140096 GO:1900055 GO:2000024 GO:2000026 GO:2000377

KEGG Pathways

Metabolic & Signaling

ko00100 ko01100 ko01110 map00100 map01100 map01110

Pfam Domains

Protein Families

DHHC

Protein Analysis

307

Amino Acids

34.55

Weight (kDa)

6.7

Isoelectric Point (pI)

37.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DHHC	PF01529	122 - 248	7.2e-39	DHHC palmitoyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014961)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60800
fragaria_vesca	FvH4_7g11740
malus_domestica	MD02G1205100.v1.1 MD07G1121600.v1.1
prunus_persica	Prupe.2G144500_v2.0.a1
pyrus_communis	pycom07g10370
rosa_chinensis	RchiOBHm_Chr1g0350251
rosa_laevigata	RLG00000028496
rosa_multiflora	Rmu_sc0001037.1_g000009
rosa_roxburghii	Rroxscaffold_4G00304950
rosa_rugosa	Rorug01G0210300 Rorug01G0210400
rosa_samantha	Rh1AG225400 Rh1BG193300
rosa_wichuraiana	Rw0G018800 Rw1G019380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	27, 323
AciI	CCGC	2 cut(s)	58, 436
AclWI	GGATC	4 cut(s)	73, 248, 261, 462
AcsI	RAATTY	2 cut(s)	332, 787
AfaI	GTAC	1 cut(s)	444
AfeI	AGCGCT	1 cut(s)	870
AfiI	CCNNNNNNNGG	2 cut(s)	27, 323
AflIII	ACRYGT	1 cut(s)	528
AgsI	TTSAA	5 cut(s)	40, 322, 400, 652, 794
AjnI	CCWGG	3 cut(s)	604, 613, 873
AjuI	GAANNNNNNNTTGG	2 cut(s)	786, 818
AleI	CACNNNNGTG	1 cut(s)	462
AluBI	AGCT	5 cut(s)	17, 53, 311, 710, 817
AluI	AGCT	5 cut(s)	17, 53, 311, 710, 817
Alw26I	GTCTC	2 cut(s)	533, 884
AlwI	GGATC	4 cut(s)	73, 248, 261, 462
Ama87I	CYCGRG	1 cut(s)	881
Aor51HI	AGCGCT	1 cut(s)	870
AoxI	GGCC	3 cut(s)	139, 281, 489
ApeKI	GCWGC	3 cut(s)	17, 565, 710
ApoI	RAATTY	2 cut(s)	332, 787
Asp700I	GAANNNNTTC	1 cut(s)	35
AspLEI	GCGC	2 cut(s)	765, 871
AspS9I	GGNCC	3 cut(s)	140, 489, 618
AsuC2I	CCSGG	2 cut(s)	143, 258
AsuHPI	GGTGA	2 cut(s)	226, 449
AvaI	CYCGRG	1 cut(s)	881
AvaII	GGWCC	1 cut(s)	618
BamHI	GGATCC	1 cut(s)	253
BanII	GRGCYC	1 cut(s)	71
BarI	GAAGNNNNNNTAC	2 cut(s)	585, 617
BbvI	GCAGC	3 cut(s)	4, 552, 697
BccI	CCATC	4 cut(s)	364, 423, 734, 898
BciT130I	CCWGG	3 cut(s)	606, 615, 875
BciVI	GTATCC	2 cut(s)	855, 897
BcnI	CCSGG	2 cut(s)	143, 258
BcoDI	GTCTC	2 cut(s)	533, 884
BfoI	RGCGCY	2 cut(s)	766, 872
BfuI	GTATCC	2 cut(s)	855, 897
BglII	AGATCT	1 cut(s)	8
BisI	GCNGC	3 cut(s)	18, 566, 711
BlsI	GCNGC	3 cut(s)	19, 567, 712
Bme1390I	CCNGG	5 cut(s)	143, 258, 606, 615, 875
Bme18I	GGWCC	1 cut(s)	618
BmeT110I	CYCGRG	1 cut(s)	881
BmgT120I	GGNCC	3 cut(s)	140, 489, 618
BmiI	GGNNCC	4 cut(s)	255, 490, 619, 620
BmrFI	CCNGG	5 cut(s)	143, 258, 606, 615, 875
BmsI	GCATC	1 cut(s)	207
BoxI	GACNNNNGTC	1 cut(s)	774
BplI	GAGNNNNNCTC	1 cut(s)	893
BpmI	CTGGAG	2 cut(s)	33, 857
BpuEI	CTTGAG	1 cut(s)	557
BpuMI	CCSGG	2 cut(s)	143, 258
BsaI	GGTCTC	1 cut(s)	884
BsaJI	CCNNGG	5 cut(s)	21, 614, 702, 772, 874
BsaWI	WCCGGW	1 cut(s)	372
BsaXI	ACNNNNNCTCC	2 cut(s)	855, 885
Bsc4I	CCNNNNNNNGG	2 cut(s)	27, 323
Bse1I	ACTGG	2 cut(s)	394, 827
Bse3DI	GCAATG	3 cut(s)	174, 418, 576
BseBI	CCWGG	3 cut(s)	606, 615, 875
BseDI	CCNNGG	5 cut(s)	21, 614, 702, 772, 874
BseGI	GGATG	1 cut(s)	828
BseLI	CCNNNNNNNGG	2 cut(s)	27, 323
BseMI	GCAATG	3 cut(s)	174, 418, 576
BseMII	CTCAG	2 cut(s)	438, 891
BseNI	ACTGG	2 cut(s)	394, 827
BseXI	GCAGC	3 cut(s)	4, 552, 697
BseYI	CCCAGC	1 cut(s)	676
BsgI	GTGCAG	1 cut(s)	31
BshFI	GGCC	3 cut(s)	141, 283, 491
BsiHKCI	CYCGRG	1 cut(s)	881
BsiSI	CCGG	4 cut(s)	143, 258, 373, 382
BslFI	GGGAC	2 cut(s)	631, 820
BslI	CCNNNNNNNGG	2 cut(s)	27, 323
BsmAI	GTCTC	2 cut(s)	533, 884
BsmFI	GGGAC	2 cut(s)	631, 820
BsmI	GAATGC	1 cut(s)	581
BsnI	GGCC	3 cut(s)	141, 283, 491
Bso31I	GGTCTC	1 cut(s)	884
BsoBI	CYCGRG	1 cut(s)	881
Bsp1286I	GDGCHC	1 cut(s)	71
Bsp143I	GATC	5 cut(s)	8, 78, 192, 253, 454
Bsp19I	CCATGG	1 cut(s)	21
BspACI	CCGC	2 cut(s)	58, 436
BspANI	GGCC	3 cut(s)	141, 283, 491
BspCNI	CTCAG	2 cut(s)	437, 892
BspLI	GGNNCC	4 cut(s)	255, 490, 619, 620
BspPI	GGATC	4 cut(s)	73, 248, 261, 462
BspTNI	GGTCTC	1 cut(s)	884
BsrDI	GCAATG	3 cut(s)	174, 418, 576
BsrI	ACTGG	2 cut(s)	394, 827
BssECI	CCNNGG	5 cut(s)	21, 614, 702, 772, 874
BssMI	GATC	5 cut(s)	8, 78, 192, 253, 454
BssT1I	CCWWGG	3 cut(s)	21, 702, 772
Bst2UI	CCWGG	3 cut(s)	606, 615, 875
Bst4CI	ACNGT	2 cut(s)	121, 547
BstC8I	GCNNGC	3 cut(s)	285, 563, 674
BstDEI	CTNAG	3 cut(s)	424, 894, 900
BstDSI	CCRYGG	1 cut(s)	21
BstF5I	GGATG	1 cut(s)	828
BstH2I	RGCGCY	2 cut(s)	766, 872
BstHHI	GCGC	2 cut(s)	765, 871
BstKTI	GATC	5 cut(s)	11, 81, 195, 256, 457
BstMAI	GTCTC	2 cut(s)	533, 884
BstMBI	GATC	5 cut(s)	8, 78, 192, 253, 454
BstMWI	GCNNNNNNNGC	4 cut(s)	23, 152, 387, 420
BstNI	CCWGG	3 cut(s)	606, 615, 875
BstPAI	GACNNNNGTC	1 cut(s)	774
BstSCI	CCNGG	5 cut(s)	141, 256, 604, 613, 873
BstV1I	GCAGC	3 cut(s)	4, 552, 697
BstX2I	RGATCY	2 cut(s)	8, 253
BstXI	CCANNNNNNTGG	1 cut(s)	276
BstYI	RGATCY	2 cut(s)	8, 253
BsuI	GTATCC	2 cut(s)	855, 897
BsuRI	GGCC	3 cut(s)	141, 283, 491
BtgI	CCRYGG	1 cut(s)	21
BtsCI	GGATG	1 cut(s)	828
BtsIMutI	CAGTG	1 cut(s)	117
Cac8I	GCNNGC	3 cut(s)	285, 563, 674
CfoI	GCGC	2 cut(s)	765, 871
Cfr13I	GGNCC	3 cut(s)	140, 489, 618
Csp6I	GTAC	1 cut(s)	443
CviAII	CATG	2 cut(s)	22, 691
CviQI	GTAC	1 cut(s)	443
DdeI	CTNAG	3 cut(s)	424, 894, 900
DpnI	GATC	5 cut(s)	10, 80, 194, 255, 456
DpnII	GATC	5 cut(s)	8, 78, 192, 253, 454
Eco130I	CCWWGG	3 cut(s)	21, 702, 772
Eco147I	AGGCCT	1 cut(s)	283
Eco24I	GRGCYC	1 cut(s)	71
Eco31I	GGTCTC	1 cut(s)	884
Eco47I	GGWCC	1 cut(s)	618
Eco47III	AGCGCT	1 cut(s)	870
Eco88I	CYCGRG	1 cut(s)	881
EcoO109I	RGGNCCY	2 cut(s)	489, 618
EcoRII	CCWGG	3 cut(s)	604, 613, 873
EcoT14I	CCWWGG	3 cut(s)	21, 702, 772
EcoT22I	ATGCAT	2 cut(s)	6, 696
EcoT38I	GRGCYC	1 cut(s)	71
ErhI	CCWWGG	3 cut(s)	21, 702, 772
FaeI	CATG	2 cut(s)	25, 694
FaqI	GGGAC	2 cut(s)	631, 820
FatI	CATG	2 cut(s)	21, 690
FauI	CCCGC	1 cut(s)	51
Fnu4HI	GCNGC	3 cut(s)	18, 566, 711
FokI	GGATG	1 cut(s)	815
FriOI	GRGCYC	1 cut(s)	71
Fsp4HI	GCNGC	3 cut(s)	18, 566, 711
GlaI	GCGC	2 cut(s)	764, 870
GluI	GCNGC	3 cut(s)	18, 566, 711
GsaI	CCCAGC	1 cut(s)	680
GsuI	CTGGAG	2 cut(s)	33, 857
HaeII	RGCGCY	2 cut(s)	766, 872
HaeIII	GGCC	3 cut(s)	141, 283, 491
HapII	CCGG	4 cut(s)	143, 258, 373, 382
HhaI	GCGC	2 cut(s)	765, 871
Hin1II	CATG	2 cut(s)	25, 694
Hin6I	GCGC	2 cut(s)	763, 869
HinP1I	GCGC	2 cut(s)	763, 869
HinfI	GANTC	4 cut(s)	167, 369, 652, 908
HpaII	CCGG	4 cut(s)	143, 258, 373, 382
HphI	GGTGA	2 cut(s)	226, 449
Hpy166II	GTNNAC	1 cut(s)	443
Hpy188I	TCNGA	3 cut(s)	331, 756, 844
Hpy188III	TCNNGA	2 cut(s)	12, 881
Hpy8I	GTNNAC	1 cut(s)	443
Hpy99I	CGWCG	1 cut(s)	861
HpyAV	CCTTC	1 cut(s)	587
HpyCH4III	ACNGT	2 cut(s)	121, 547
HpyCH4IV	ACGT	2 cut(s)	110, 530
HpyF10VI	GCNNNNNNNGC	4 cut(s)	23, 152, 387, 420
HpyF3I	CTNAG	3 cut(s)	424, 894, 900
HpySE526I	ACGT	2 cut(s)	110, 530
Hsp92II	CATG	2 cut(s)	25, 694
HspAI	GCGC	2 cut(s)	763, 869
KflI	GGGWCCC	1 cut(s)	618
Kzo9I	GATC	5 cut(s)	8, 78, 192, 253, 454
LmnI	GCTCC	2 cut(s)	14, 876
Lsp1109I	GCAGC	3 cut(s)	4, 552, 697
LweI	GCATC	1 cut(s)	207
MaeII	ACGT	2 cut(s)	110, 530
MaeIII	GTNAC	3 cut(s)	106, 230, 550
MalI	GATC	5 cut(s)	10, 80, 194, 255, 456
MboI	GATC	5 cut(s)	8, 78, 192, 253, 454
MboII	GAAGA	5 cut(s)	308, 503, 754, 857, 860
MflI	RGATCY	2 cut(s)	8, 253
MhlI	GDGCHC	1 cut(s)	71
MluCI	AATT	6 cut(s)	133, 274, 332, 478, 496, 787
MlyI	GAGTC	2 cut(s)	378, 902
MnlI	CCTC	5 cut(s)	92, 273, 296, 417, 724
Mph1103I	ATGCAT	2 cut(s)	6, 696
MroXI	GAANNNNTTC	1 cut(s)	35
MseI	TTAA	3 cut(s)	477, 494, 668
MslI	CAYNNNNRTG	1 cut(s)	462
MspI	CCGG	4 cut(s)	143, 258, 373, 382
MspR9I	CCNGG	5 cut(s)	143, 258, 606, 615, 875
Mva1269I	GAATGC	1 cut(s)	581
MvaI	CCWGG	3 cut(s)	606, 615, 875
MwoI	GCNNNNNNNGC	4 cut(s)	23, 152, 387, 420
NciI	CCSGG	2 cut(s)	143, 258
NcoI	CCATGG	1 cut(s)	21
NdeII	GATC	5 cut(s)	8, 78, 192, 253, 454
NlaIII	CATG	2 cut(s)	25, 694
NlaIV	GGNNCC	4 cut(s)	255, 490, 619, 620
NmuCI	GTSAC	1 cut(s)	106
NsiI	ATGCAT	2 cut(s)	6, 696
OliI	CACNNNNGTG	1 cut(s)	462
PaeR7I	CTCGAG	1 cut(s)	881
PceI	AGGCCT	1 cut(s)	283
PctI	GAATGC	1 cut(s)	581
PdmI	GAANNNNTTC	1 cut(s)	35
PfeI	GAWTC	2 cut(s)	167, 652
PflMI	CCANNNNNTGG	2 cut(s)	27, 323
PkrI	GCNGC	3 cut(s)	19, 567, 712
PleI	GAGTC	2 cut(s)	377, 902
PpsI	GAGTC	2 cut(s)	377, 902
PpuMI	RGGWCCY	1 cut(s)	618
PshAI	GACNNNNGTC	1 cut(s)	774
Psp5II	RGGWCCY	1 cut(s)	618
Psp6I	CCWGG	3 cut(s)	604, 613, 873
PspFI	CCCAGC	1 cut(s)	676
PspGI	CCWGG	3 cut(s)	604, 613, 873
PspN4I	GGNNCC	4 cut(s)	255, 490, 619, 620
PspPI	GGNCC	3 cut(s)	140, 489, 618
PspPPI	RGGWCCY	1 cut(s)	618
PsuI	RGATCY	2 cut(s)	8, 253
RsaI	GTAC	1 cut(s)	444
RsaNI	GTAC	1 cut(s)	443
RseI	CAYNNNNRTG	1 cut(s)	462
SaqAI	TTAA	3 cut(s)	477, 494, 668
SatI	GCNGC	3 cut(s)	18, 566, 711
Sau3AI	GATC	5 cut(s)	8, 78, 192, 253, 454
Sau96I	GGNCC	3 cut(s)	140, 489, 618
SchI	GAGTC	2 cut(s)	378, 902
ScrFI	CCNGG	5 cut(s)	143, 258, 606, 615, 875
SduI	GDGCHC	1 cut(s)	71
SfaNI	GCATC	1 cut(s)	207
Sfr274I	CTCGAG	1 cut(s)	881
SinI	GGWCC	1 cut(s)	618
SlaI	CTCGAG	1 cut(s)	881
SmiMI	CAYNNNNRTG	1 cut(s)	462
SmlI	CTYRAG	2 cut(s)	536, 881
SmoI	CTYRAG	2 cut(s)	536, 881
Sse9I	AATT	6 cut(s)	133, 274, 332, 478, 496, 787
SseBI	AGGCCT	1 cut(s)	283
SsiI	CCGC	2 cut(s)	58, 436
SspI	AATATT	1 cut(s)	506
StuI	AGGCCT	1 cut(s)	283
StyD4I	CCNGG	5 cut(s)	141, 256, 604, 613, 873
StyI	CCWWGG	3 cut(s)	21, 702, 772
TaaI	ACNGT	2 cut(s)	121, 547
TaiI	ACGT	2 cut(s)	113, 533
TaqI	TCGA	3 cut(s)	729, 778, 882
TasI	AATT	6 cut(s)	133, 274, 332, 478, 496, 787
TatI	WGTACW	1 cut(s)	442
TfiI	GAWTC	2 cut(s)	167, 652
Tru1I	TTAA	3 cut(s)	477, 494, 668
Tru9I	TTAA	3 cut(s)	477, 494, 668
TscAI	CASTG	1 cut(s)	124
TseFI	GTSAC	1 cut(s)	106
TseI	GCWGC	3 cut(s)	17, 565, 710
Tsp45I	GTSAC	1 cut(s)	106
TspDTI	ATGAA	3 cut(s)	309, 565, 817
TspGWI	ACGGA	2 cut(s)	266, 874
TspRI	CASTG	1 cut(s)	124
Van91I	CCANNNNNTGG	2 cut(s)	27, 323
VpaK11BI	GGWCC	1 cut(s)	618
XapI	RAATTY	2 cut(s)	332, 787
XhoI	CTCGAG	1 cut(s)	881
XmnI	GAANNNNTTC	1 cut(s)	35
Zsp2I	ATGCAT	2 cut(s)	6, 696

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.