Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0014961

Physical Location & Seq

Genomic Coordinates Reverse (-)

10781067 .. 10787266

Gene Structure 6200 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g11740.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

ATGCATAGATCTGGAGCTGCCATGGCTTGGAATGTGTTCAAGTTCTGCACAGCTCTCAGGGGTCTAGGTTCTGTTATGATCCTCTTGGTTCTTGGAGTTGTGGGTGTGACGTATTACACTGTTGTTTTGACTAATTATGGCCCAGCTTTGTATGCTGGTGGACTTGATTCCCTCATTGCTATTGTCGTTTTGATCTTGTTTCATTCATTGTTGGTGATGCTATTATGGAGTTATTTTTCTGTTGTTTTGACGGATCCCGGTGGTGTGCCACCGAACTGGAGGCCTGCTGTTGATGAAGAAAGAGGGGAAGCTGACCCATTAAATGGTTCAGAGTTCAGTGATTTGCAAACTGACCCGTCGAATCAAAGAGTCCGGTATTGCCGGAAGTGCAACCAGTTGAAACCACCGCGCTGCCATCATTGCTCAGTTTGTGGGCGGTGTGTACTGAAAATGGATCACCATTGTGTATGGGTTGTCAATTGTGTTGGGGCCTTAAATTACAAGTATTTTCTTCTTTTCCTGTTCTACACGTTCCTTGAGACAACTGTTGTAACTTTATGCTTACTCCCACACTTCATTGCATTCTTTAGTGAAGGAGAAATTCCTGGAACACCCGGGACCCTTGCTACTACTTTCCTTGCTTTCGTTTTGAATCTTGCGTTTGCATTAAGTGTGCTGGGATTTCTTATCATGCATATATCCTTGGTGGCTGCAAATACTACAACTATTGAGTTTCTGATCAGGCATATGAGAAGAAAACCACTCCGAAATGGCGCTATGACCTTGGTCGGAAAAAGAATTTTGAACAGGTGTTTGGGACAGACAAGCTATACTGGTTCATCCCTGCTTATTCAGAAGAAGATTTGCGACGGATACCAGCGCTCCAGGGTCTTGAGTATCCATCTAAGCCTGAATTTGACTCCCAAGACTTCTAAGCACCATATGTTTGCACGTCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000138 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005794 GO:0005795 GO:0005802 GO:0007275 GO:0007568 GO:0008150 GO:0010150 GO:0012505 GO:0016417 GO:0016740 GO:0016746 GO:0016747 GO:0019222 GO:0019707 GO:0031323 GO:0031410 GO:0031982 GO:0031984 GO:0031985 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051239 GO:0065007 GO:0090693 GO:0097708 GO:0098791 GO:0099402 GO:0140096 GO:1900055 GO:2000024 GO:2000026 GO:2000377

KEGG Pathways

Metabolic & Signaling

ko00100 ko01100 ko01110 map00100 map01100 map01110

Pfam Domains

Protein Families

DHHC

Protein Analysis

320

Amino Acids

35.59

Weight (kDa)

9.32

Isoelectric Point (pI)

34.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DHHC	PF01529	122 - 246	8e-38	DHHC palmitoyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014961)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60800
fragaria_vesca	FvH4_7g11740
malus_domestica	MD02G1205100.v1.1 MD07G1121600.v1.1
prunus_persica	Prupe.2G144500_v2.0.a1
pyrus_communis	pycom07g10370
rosa_chinensis	RchiOBHm_Chr1g0350251
rosa_laevigata	RLG00000028496
rosa_multiflora	Rmu_sc0001037.1_g000009
rosa_roxburghii	Rroxscaffold_4G00304950
rosa_rugosa	Rorug01G0210300 Rorug01G0210400
rosa_samantha	Rh1AG225400 Rh1BG193300
rosa_wichuraiana	Rw0G018800 Rw1G019380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	27, 323
AccII	CGCG	1 cut(s)	409
AciI	CCGC	2 cut(s)	407, 436
AclWI	GGATC	4 cut(s)	73, 248, 261, 462
AcsI	RAATTY	3 cut(s)	600, 798, 913
AfaI	GTAC	1 cut(s)	444
AfeI	AGCGCT	1 cut(s)	881
AfiI	CCNNNNNNNGG	2 cut(s)	27, 323
AflIII	ACRYGT	1 cut(s)	528
AgsI	TTSAA	4 cut(s)	40, 400, 652, 805
AjiI	CACGTC	1 cut(s)	953
AjnI	CCWGG	2 cut(s)	604, 884
AjuI	GAANNNNNNNTTGG	2 cut(s)	797, 829
AleI	CACNNNNGTG	2 cut(s)	462, 955
AluBI	AGCT	5 cut(s)	17, 53, 146, 311, 828
AluI	AGCT	5 cut(s)	17, 53, 146, 311, 828
Alw26I	GTCTC	1 cut(s)	533
AlwI	GGATC	4 cut(s)	73, 248, 261, 462
Ama87I	CYCGRG	1 cut(s)	614
Aor51HI	AGCGCT	1 cut(s)	881
AoxI	GGCC	3 cut(s)	139, 281, 489
ApeKI	GCWGC	3 cut(s)	17, 411, 710
ApoI	RAATTY	3 cut(s)	600, 798, 913
Asp700I	GAANNNNTTC	1 cut(s)	35
AspLEI	GCGC	3 cut(s)	411, 776, 882
AspS9I	GGNCC	3 cut(s)	140, 489, 618
AsuC2I	CCSGG	3 cut(s)	258, 615, 616
AsuHPI	GGTGA	2 cut(s)	226, 449
AvaI	CYCGRG	1 cut(s)	614
AvaII	GGWCC	1 cut(s)	618
BamHI	GGATCC	1 cut(s)	253
BbvI	GCAGC	3 cut(s)	4, 398, 697
BccI	CCATC	2 cut(s)	423, 909
BciT130I	CCWGG	2 cut(s)	606, 886
BciVI	GTATCC	2 cut(s)	866, 908
BclI	TGATCA	1 cut(s)	738
BcnI	CCSGG	3 cut(s)	258, 615, 616
BcoDI	GTCTC	1 cut(s)	533
BfaI	CTAG	1 cut(s)	65
BfoI	RGCGCY	2 cut(s)	777, 883
BfuI	GTATCC	2 cut(s)	866, 908
BglII	AGATCT	1 cut(s)	8
BisI	GCNGC	3 cut(s)	18, 412, 711
BlsI	GCNGC	3 cut(s)	19, 413, 712
Bme1390I	CCNGG	5 cut(s)	258, 606, 615, 616, 886
Bme18I	GGWCC	1 cut(s)	618
BmeT110I	CYCGRG	1 cut(s)	614
BmgBI	CACGTC	1 cut(s)	953
BmgT120I	GGNCC	3 cut(s)	140, 489, 618
BmiI	GGNNCC	4 cut(s)	255, 490, 619, 620
BmrFI	CCNGG	5 cut(s)	258, 606, 615, 616, 886
BmsI	GCATC	1 cut(s)	207
BoxI	GACNNNNGTC	1 cut(s)	785
BpmI	CTGGAG	3 cut(s)	33, 298, 868
BpuEI	CTTGAG	2 cut(s)	557, 913
BpuMI	CCSGG	3 cut(s)	258, 615, 616
BsaJI	CCNNGG	5 cut(s)	21, 614, 702, 783, 885
BsaWI	WCCGGW	1 cut(s)	372
BsaXI	ACNNNNNCTCC	2 cut(s)	866, 896
Bsc4I	CCNNNNNNNGG	2 cut(s)	27, 323
Bse1I	ACTGG	3 cut(s)	281, 394, 838
Bse3DI	GCAATG	3 cut(s)	174, 418, 576
BseBI	CCWGG	2 cut(s)	606, 886
BseDI	CCNNGG	5 cut(s)	21, 614, 702, 783, 885
BseGI	GGATG	1 cut(s)	839
BseLI	CCNNNNNNNGG	2 cut(s)	27, 323
BseMI	GCAATG	3 cut(s)	174, 418, 576
BseMII	CTCAG	2 cut(s)	70, 438
BseNI	ACTGG	3 cut(s)	281, 394, 838
BseXI	GCAGC	3 cut(s)	4, 398, 697
BseYI	CCCAGC	2 cut(s)	142, 676
BsgI	GTGCAG	1 cut(s)	31
Bsh1236I	CGCG	1 cut(s)	409
BshFI	GGCC	3 cut(s)	141, 283, 491
BsiHKCI	CYCGRG	1 cut(s)	614
BsiSI	CCGG	4 cut(s)	258, 373, 382, 615
BslFI	GGGAC	2 cut(s)	631, 831
BslI	CCNNNNNNNGG	2 cut(s)	27, 323
BsmAI	GTCTC	1 cut(s)	533
BsmFI	GGGAC	2 cut(s)	631, 831
BsmI	GAATGC	1 cut(s)	581
BsnI	GGCC	3 cut(s)	141, 283, 491
BsoBI	CYCGRG	1 cut(s)	614
Bsp143I	GATC	6 cut(s)	8, 78, 192, 253, 454, 738
Bsp19I	CCATGG	1 cut(s)	21
BspACI	CCGC	2 cut(s)	407, 436
BspANI	GGCC	3 cut(s)	141, 283, 491
BspCNI	CTCAG	2 cut(s)	69, 437
BspFNI	CGCG	1 cut(s)	409
BspLI	GGNNCC	4 cut(s)	255, 490, 619, 620
BspPI	GGATC	4 cut(s)	73, 248, 261, 462
BsrDI	GCAATG	3 cut(s)	174, 418, 576
BsrI	ACTGG	3 cut(s)	281, 394, 838
BssECI	CCNNGG	5 cut(s)	21, 614, 702, 783, 885
BssMI	GATC	6 cut(s)	8, 78, 192, 253, 454, 738
BssT1I	CCWWGG	3 cut(s)	21, 702, 783
Bst2UI	CCWGG	2 cut(s)	606, 886
Bst4CI	ACNGT	2 cut(s)	121, 547
BstC8I	GCNNGC	1 cut(s)	285
BstDEI	CTNAG	4 cut(s)	56, 424, 905, 933
BstDSI	CCRYGG	1 cut(s)	21
BstF5I	GGATG	1 cut(s)	839
BstFNI	CGCG	1 cut(s)	409
BstH2I	RGCGCY	2 cut(s)	777, 883
BstHHI	GCGC	3 cut(s)	411, 776, 882
BstKTI	GATC	6 cut(s)	11, 81, 195, 256, 457, 741
BstMAI	GTCTC	1 cut(s)	533
BstMBI	GATC	6 cut(s)	8, 78, 192, 253, 454, 738
BstMWI	GCNNNNNNNGC	4 cut(s)	23, 152, 387, 420
BstNI	CCWGG	2 cut(s)	606, 886
BstPAI	GACNNNNGTC	1 cut(s)	785
BstSCI	CCNGG	5 cut(s)	256, 604, 613, 614, 884
BstUI	CGCG	1 cut(s)	409
BstV1I	GCAGC	3 cut(s)	4, 398, 697
BstX2I	RGATCY	2 cut(s)	8, 253
BstXI	CCANNNNNNTGG	1 cut(s)	276
BstYI	RGATCY	2 cut(s)	8, 253
BsuI	GTATCC	2 cut(s)	866, 908
BsuRI	GGCC	3 cut(s)	141, 283, 491
BtgI	CCRYGG	1 cut(s)	21
BtrI	CACGTC	1 cut(s)	953
BtsCI	GGATG	1 cut(s)	839
BtsIMutI	CAGTG	2 cut(s)	117, 343
Cac8I	GCNNGC	1 cut(s)	285
CfoI	GCGC	3 cut(s)	411, 776, 882
Cfr13I	GGNCC	3 cut(s)	140, 489, 618
Cfr9I	CCCGGG	1 cut(s)	614
Csp6I	GTAC	1 cut(s)	443
CviAII	CATG	2 cut(s)	22, 691
CviQI	GTAC	1 cut(s)	443
DdeI	CTNAG	4 cut(s)	56, 424, 905, 933
DpnI	GATC	6 cut(s)	10, 80, 194, 255, 456, 740
DpnII	GATC	6 cut(s)	8, 78, 192, 253, 454, 738
Eco130I	CCWWGG	3 cut(s)	21, 702, 783
Eco147I	AGGCCT	1 cut(s)	283
Eco47I	GGWCC	1 cut(s)	618
Eco47III	AGCGCT	1 cut(s)	881
Eco88I	CYCGRG	1 cut(s)	614
EcoO109I	RGGNCCY	2 cut(s)	489, 618
EcoRII	CCWGG	2 cut(s)	604, 884
EcoT14I	CCWWGG	3 cut(s)	21, 702, 783
EcoT22I	ATGCAT	2 cut(s)	6, 696
ErhI	CCWWGG	3 cut(s)	21, 702, 783
FaeI	CATG	2 cut(s)	25, 694
FaqI	GGGAC	2 cut(s)	631, 831
FatI	CATG	2 cut(s)	21, 690
FauNDI	CATATG	2 cut(s)	747, 942
FbaI	TGATCA	1 cut(s)	738
Fnu4HI	GCNGC	3 cut(s)	18, 412, 711
FokI	GGATG	1 cut(s)	826
Fsp4HI	GCNGC	3 cut(s)	18, 412, 711
FspBI	CTAG	1 cut(s)	65
GlaI	GCGC	3 cut(s)	410, 775, 881
GluI	GCNGC	3 cut(s)	18, 412, 711
GsaI	CCCAGC	2 cut(s)	146, 680
GsuI	CTGGAG	3 cut(s)	33, 298, 868
HaeII	RGCGCY	2 cut(s)	777, 883
HaeIII	GGCC	3 cut(s)	141, 283, 491
HapII	CCGG	4 cut(s)	258, 373, 382, 615
HhaI	GCGC	3 cut(s)	411, 776, 882
Hin1II	CATG	2 cut(s)	25, 694
Hin6I	GCGC	3 cut(s)	409, 774, 880
HinP1I	GCGC	3 cut(s)	409, 774, 880
HinfI	GANTC	5 cut(s)	167, 361, 369, 652, 919
HpaII	CCGG	4 cut(s)	258, 373, 382, 615
HphI	GGTGA	2 cut(s)	226, 449
Hpy166II	GTNNAC	2 cut(s)	161, 443
Hpy188I	TCNGA	5 cut(s)	331, 738, 767, 791, 855
Hpy188III	TCNNGA	2 cut(s)	12, 892
Hpy8I	GTNNAC	2 cut(s)	161, 443
Hpy99I	CGWCG	2 cut(s)	361, 872
HpyAV	CCTTC	1 cut(s)	587
HpyCH4III	ACNGT	2 cut(s)	121, 547
HpyCH4IV	ACGT	3 cut(s)	110, 530, 952
HpyCH4V	TGCA	9 cut(s)	4, 48, 346, 390, 581, 665, 694, 713, 950
HpyF10VI	GCNNNNNNNGC	4 cut(s)	23, 152, 387, 420
HpyF3I	CTNAG	4 cut(s)	56, 424, 905, 933
HpySE526I	ACGT	3 cut(s)	110, 530, 952
Hsp92II	CATG	2 cut(s)	25, 694
HspAI	GCGC	3 cut(s)	409, 774, 880
KflI	GGGWCCC	1 cut(s)	618
Ksp22I	TGATCA	1 cut(s)	738
Kzo9I	GATC	6 cut(s)	8, 78, 192, 253, 454, 738
LmnI	GCTCC	2 cut(s)	14, 887
Lsp1109I	GCAGC	3 cut(s)	4, 398, 697
LweI	GCATC	1 cut(s)	207
MaeI	CTAG	1 cut(s)	65
MaeII	ACGT	3 cut(s)	110, 530, 952
MaeIII	GTNAC	2 cut(s)	106, 550
MalI	GATC	6 cut(s)	10, 80, 194, 255, 456, 740
MboI	GATC	6 cut(s)	8, 78, 192, 253, 454, 738
MboII	GAAGA	5 cut(s)	308, 503, 765, 868, 871
MfeI	CAATTG	1 cut(s)	478
MflI	RGATCY	2 cut(s)	8, 253
MluCI	AATT	6 cut(s)	133, 478, 496, 600, 798, 913
MlyI	GAGTC	2 cut(s)	378, 913
MmeI	TCCRAC	1 cut(s)	769
MnlI	CCTC	4 cut(s)	92, 182, 273, 296
Mph1103I	ATGCAT	2 cut(s)	6, 696
MroXI	GAANNNNTTC	1 cut(s)	35
MseI	TTAA	3 cut(s)	320, 494, 668
MslI	CAYNNNNRTG	2 cut(s)	462, 955
MspI	CCGG	4 cut(s)	258, 373, 382, 615
MspR9I	CCNGG	5 cut(s)	258, 606, 615, 616, 886
MunI	CAATTG	1 cut(s)	478
Mva1269I	GAATGC	1 cut(s)	581
MvaI	CCWGG	2 cut(s)	606, 886
MvnI	CGCG	1 cut(s)	409
MwoI	GCNNNNNNNGC	4 cut(s)	23, 152, 387, 420
NciI	CCSGG	3 cut(s)	258, 615, 616
NcoI	CCATGG	1 cut(s)	21
NdeI	CATATG	2 cut(s)	747, 942
NdeII	GATC	6 cut(s)	8, 78, 192, 253, 454, 738
NlaIII	CATG	2 cut(s)	25, 694
NlaIV	GGNNCC	4 cut(s)	255, 490, 619, 620
NmuCI	GTSAC	1 cut(s)	106
NsiI	ATGCAT	2 cut(s)	6, 696
OliI	CACNNNNGTG	2 cut(s)	462, 955
PceI	AGGCCT	1 cut(s)	283
PctI	GAATGC	1 cut(s)	581
PdmI	GAANNNNTTC	1 cut(s)	35
PfeI	GAWTC	3 cut(s)	167, 361, 652
PflMI	CCANNNNNTGG	2 cut(s)	27, 323
PfoI	TCCNGGA	1 cut(s)	604
PkrI	GCNGC	3 cut(s)	19, 413, 712
PleI	GAGTC	2 cut(s)	377, 913
PpsI	GAGTC	2 cut(s)	377, 913
PpuMI	RGGWCCY	1 cut(s)	618
PshAI	GACNNNNGTC	1 cut(s)	785
Psp5II	RGGWCCY	1 cut(s)	618
Psp6I	CCWGG	2 cut(s)	604, 884
PspFI	CCCAGC	2 cut(s)	142, 676
PspGI	CCWGG	2 cut(s)	604, 884
PspN4I	GGNNCC	4 cut(s)	255, 490, 619, 620
PspPI	GGNCC	3 cut(s)	140, 489, 618
PspPPI	RGGWCCY	1 cut(s)	618
PsuI	RGATCY	2 cut(s)	8, 253
RsaI	GTAC	1 cut(s)	444
RsaNI	GTAC	1 cut(s)	443
RseI	CAYNNNNRTG	2 cut(s)	462, 955
SaqAI	TTAA	3 cut(s)	320, 494, 668
SatI	GCNGC	3 cut(s)	18, 412, 711
Sau3AI	GATC	6 cut(s)	8, 78, 192, 253, 454, 738
Sau96I	GGNCC	3 cut(s)	140, 489, 618
SchI	GAGTC	2 cut(s)	378, 913
ScrFI	CCNGG	5 cut(s)	258, 606, 615, 616, 886
SfaNI	GCATC	1 cut(s)	207
SinI	GGWCC	1 cut(s)	618
SmaI	CCCGGG	1 cut(s)	616
SmiMI	CAYNNNNRTG	2 cut(s)	462, 955
SmlI	CTYRAG	2 cut(s)	536, 892
SmoI	CTYRAG	2 cut(s)	536, 892
Sse9I	AATT	6 cut(s)	133, 478, 496, 600, 798, 913
SseBI	AGGCCT	1 cut(s)	283
SsiI	CCGC	2 cut(s)	407, 436
SspMI	CTAG	1 cut(s)	65
StuI	AGGCCT	1 cut(s)	283
StyD4I	CCNGG	5 cut(s)	256, 604, 613, 614, 884
StyI	CCWWGG	3 cut(s)	21, 702, 783
TaaI	ACNGT	2 cut(s)	121, 547
TaiI	ACGT	3 cut(s)	113, 533, 955
TaqI	TCGA	1 cut(s)	359
TasI	AATT	6 cut(s)	133, 478, 496, 600, 798, 913
TatI	WGTACW	1 cut(s)	442
TfiI	GAWTC	3 cut(s)	167, 361, 652
Tru1I	TTAA	3 cut(s)	320, 494, 668
Tru9I	TTAA	3 cut(s)	320, 494, 668
TscAI	CASTG	2 cut(s)	124, 343
TseFI	GTSAC	1 cut(s)	106
TseI	GCWGC	3 cut(s)	17, 411, 710
Tsp45I	GTSAC	1 cut(s)	106
TspDTI	ATGAA	5 cut(s)	191, 195, 309, 565, 828
TspGWI	ACGGA	2 cut(s)	266, 885
TspMI	CCCGGG	1 cut(s)	614
TspRI	CASTG	2 cut(s)	124, 343
Van91I	CCANNNNNTGG	2 cut(s)	27, 323
VpaK11BI	GGWCC	1 cut(s)	618
XapI	RAATTY	3 cut(s)	600, 798, 913
XmaI	CCCGGG	1 cut(s)	614
XmnI	GAANNNNTTC	1 cut(s)	35
XspI	CTAG	1 cut(s)	65
Zsp2I	ATGCAT	2 cut(s)	6, 696

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.