Rh1AG225400

Belongs to the DHHC palmitoyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0014961
Physical Location & Seq
Reverse (-)
42846288 .. 42852146
5859 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG225400.1

Sequence Viewer

Length: 924 bp
ATGCATAGATCTGGAGCTGCCATGGCTTGGAATGTGTTCAAGTTCTGCACAGCTCTGCGGGGTCTGGGCTCGGTTATGATCCTCTTGGTTCTTGGAGTTGTGGGTGTGACGTATTACACTGTCGTTTTGACTAATTATGGCCCGGCTTTGTATGCTGGTGGGCTTGATTCTCTCATTGCTATTGTCGTTTTGATCTTGTTCCATTCTTTGTTGGTGATGCTACTATGGAGTTACTTTTCTGTTGTTTTGACGGATCCCGGTGGTGTGCCACCGAATTGGAGGCCAGCTGTTGATGAAGAAAGAGGGGAGGCTGACCCATTGAATGGTTCAGAATTTAGTGATTTGCAAACTGACCCATCAAATCAGAGAGTCCGGTATTGCCGGAAGTGCAACCAGTTGAAACCACCTCGTTGCCATCATTGCTCAGTTTGTGGGCGGTGTGTACTGAAAATGGATCACCATTGTGTATGGGTTGTTAATTGTGTTGGGGCCTTAAATTACAAATATTTTCTTCTTTTCTTGTTCTACACGTTCCTTGAGACAACTGTTGTAACTTTATGCTTGCTGCCACACTTCATTGCATTCTTTAGTGAAGGAGAAATACCTGGAACACCAGGGACCCTTGCAACTACTTTCCTTGCTTTTGTTTTGAATCTTGCATTTGCATTAAGCGTGCTGGGGTTTCTTATCATGCATATATCCTTGGTAGCTGCAAATACTACAACCATCGAGGCGTATGAGAAGAAAACCACTCCGAAATGGCGCTATGACCTTGGTCGAAAAAAGAATTTTGAACAGGTGTTTGGGACAGACAAGCTATACTGGTTCATCCCTGCTTATTCAGAAGAAGATTTGCGACGGATACCAGCGCTCCAGGGTCTCGAGTATCCATCTAAGCCTGAGTTTGACTCCCAAGACTTCTAA

Protein Analysis

307

Amino Acids

34.55

Weight (kDa)

6.7

Isoelectric Point (pI)

37.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DHHC PF01529 122 - 248 7.2e-39 DHHC palmitoyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014961)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G60800
fragaria_vesca FvH4_7g11740
malus_domestica MD02G1205100.v1.1 MD07G1121600.v1.1
prunus_persica Prupe.2G144500_v2.0.a1
pyrus_communis pycom07g10370
rosa_chinensis RchiOBHm_Chr1g0350251
rosa_laevigata RLG00000028496
rosa_multiflora Rmu_sc0001037.1_g000009
rosa_roxburghii Rroxscaffold_4G00304950
rosa_rugosa Rorug01G0210300 Rorug01G0210400
rosa_samantha Rh1AG225400 Rh1BG193300
rosa_wichuraiana Rw0G018800 Rw1G019380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 27, 323
AciI CCGC 2 cut(s) 58, 436
AclWI GGATC 4 cut(s) 73, 248, 261, 462
AcsI RAATTY 2 cut(s) 332, 787
AfaI GTAC 1 cut(s) 444
AfeI AGCGCT 1 cut(s) 870
AfiI CCNNNNNNNGG 2 cut(s) 27, 323
AflIII ACRYGT 1 cut(s) 528
AgsI TTSAA 5 cut(s) 40, 322, 400, 652, 794
AjnI CCWGG 3 cut(s) 604, 613, 873
AjuI GAANNNNNNNTTGG 2 cut(s) 786, 818
AleI CACNNNNGTG 1 cut(s) 462
AluBI AGCT 5 cut(s) 17, 53, 287, 710, 817
AluI AGCT 5 cut(s) 17, 53, 287, 710, 817
Alw26I GTCTC 2 cut(s) 533, 884
AlwI GGATC 4 cut(s) 73, 248, 261, 462
Ama87I CYCGRG 1 cut(s) 881
Aor51HI AGCGCT 1 cut(s) 870
AoxI GGCC 3 cut(s) 139, 281, 489
ApeKI GCWGC 3 cut(s) 17, 565, 710
ApoI RAATTY 2 cut(s) 332, 787
Asp700I GAANNNNTTC 1 cut(s) 35
AspLEI GCGC 2 cut(s) 765, 871
AspS9I GGNCC 3 cut(s) 140, 489, 618
AsuC2I CCSGG 2 cut(s) 143, 258
AsuHPI GGTGA 2 cut(s) 226, 449
AvaI CYCGRG 1 cut(s) 881
AvaII GGWCC 1 cut(s) 618
BamHI GGATCC 1 cut(s) 253
BanII GRGCYC 1 cut(s) 71
BarI GAAGNNNNNNTAC 2 cut(s) 585, 617
BbvI GCAGC 3 cut(s) 4, 552, 697
BccI CCATC 4 cut(s) 364, 423, 734, 898
BciT130I CCWGG 3 cut(s) 606, 615, 875
BciVI GTATCC 2 cut(s) 855, 897
BcnI CCSGG 2 cut(s) 143, 258
BcoDI GTCTC 2 cut(s) 533, 884
BfoI RGCGCY 2 cut(s) 766, 872
BfuI GTATCC 2 cut(s) 855, 897
BglII AGATCT 1 cut(s) 8
BisI GCNGC 3 cut(s) 18, 566, 711
BlsI GCNGC 3 cut(s) 19, 567, 712
Bme1390I CCNGG 5 cut(s) 143, 258, 606, 615, 875
Bme18I GGWCC 1 cut(s) 618
BmeT110I CYCGRG 1 cut(s) 881
BmgT120I GGNCC 3 cut(s) 140, 489, 618
BmiI GGNNCC 4 cut(s) 255, 490, 619, 620
BmrFI CCNGG 5 cut(s) 143, 258, 606, 615, 875
BmsI GCATC 1 cut(s) 207
BoxI GACNNNNGTC 1 cut(s) 774
BplI GAGNNNNNCTC 1 cut(s) 893
BpmI CTGGAG 2 cut(s) 33, 857
BpuEI CTTGAG 1 cut(s) 557
BpuMI CCSGG 2 cut(s) 143, 258
BsaI GGTCTC 1 cut(s) 884
BsaJI CCNNGG 5 cut(s) 21, 614, 702, 772, 874
BsaWI WCCGGW 1 cut(s) 372
BsaXI ACNNNNNCTCC 2 cut(s) 855, 885
Bsc4I CCNNNNNNNGG 2 cut(s) 27, 323
Bse1I ACTGG 2 cut(s) 394, 827
Bse3DI GCAATG 3 cut(s) 174, 418, 576
BseBI CCWGG 3 cut(s) 606, 615, 875
BseDI CCNNGG 5 cut(s) 21, 614, 702, 772, 874
BseGI GGATG 1 cut(s) 828
BseLI CCNNNNNNNGG 2 cut(s) 27, 323
BseMI GCAATG 3 cut(s) 174, 418, 576
BseMII CTCAG 2 cut(s) 438, 891
BseNI ACTGG 2 cut(s) 394, 827
BseXI GCAGC 3 cut(s) 4, 552, 697
BseYI CCCAGC 1 cut(s) 676
BsgI GTGCAG 1 cut(s) 31
BshFI GGCC 3 cut(s) 141, 283, 491
BsiHKCI CYCGRG 1 cut(s) 881
BsiSI CCGG 4 cut(s) 143, 258, 373, 382
BslFI GGGAC 2 cut(s) 631, 820
BslI CCNNNNNNNGG 2 cut(s) 27, 323
BsmAI GTCTC 2 cut(s) 533, 884
BsmFI GGGAC 2 cut(s) 631, 820
BsmI GAATGC 1 cut(s) 581
BsnI GGCC 3 cut(s) 141, 283, 491
Bso31I GGTCTC 1 cut(s) 884
BsoBI CYCGRG 1 cut(s) 881
Bsp1286I GDGCHC 1 cut(s) 71
Bsp143I GATC 5 cut(s) 8, 78, 192, 253, 454
Bsp19I CCATGG 1 cut(s) 21
BspACI CCGC 2 cut(s) 58, 436
BspANI GGCC 3 cut(s) 141, 283, 491
BspCNI CTCAG 2 cut(s) 437, 892
BspLI GGNNCC 4 cut(s) 255, 490, 619, 620
BspPI GGATC 4 cut(s) 73, 248, 261, 462
BspTNI GGTCTC 1 cut(s) 884
BsrDI GCAATG 3 cut(s) 174, 418, 576
BsrI ACTGG 2 cut(s) 394, 827
BssECI CCNNGG 5 cut(s) 21, 614, 702, 772, 874
BssMI GATC 5 cut(s) 8, 78, 192, 253, 454
BssT1I CCWWGG 3 cut(s) 21, 702, 772
Bst2UI CCWGG 3 cut(s) 606, 615, 875
Bst4CI ACNGT 2 cut(s) 121, 547
BstC8I GCNNGC 3 cut(s) 285, 563, 674
BstDEI CTNAG 3 cut(s) 424, 894, 900
BstDSI CCRYGG 1 cut(s) 21
BstF5I GGATG 1 cut(s) 828
BstH2I RGCGCY 2 cut(s) 766, 872
BstHHI GCGC 2 cut(s) 765, 871
BstKTI GATC 5 cut(s) 11, 81, 195, 256, 457
BstMAI GTCTC 2 cut(s) 533, 884
BstMBI GATC 5 cut(s) 8, 78, 192, 253, 454
BstMWI GCNNNNNNNGC 4 cut(s) 23, 152, 387, 420
BstNI CCWGG 3 cut(s) 606, 615, 875
BstPAI GACNNNNGTC 1 cut(s) 774
BstSCI CCNGG 5 cut(s) 141, 256, 604, 613, 873
BstV1I GCAGC 3 cut(s) 4, 552, 697
BstX2I RGATCY 2 cut(s) 8, 253
BstXI CCANNNNNNTGG 1 cut(s) 276
BstYI RGATCY 2 cut(s) 8, 253
BsuI GTATCC 2 cut(s) 855, 897
BsuRI GGCC 3 cut(s) 141, 283, 491
BtgI CCRYGG 1 cut(s) 21
BtsCI GGATG 1 cut(s) 828
BtsIMutI CAGTG 1 cut(s) 117
Cac8I GCNNGC 3 cut(s) 285, 563, 674
CfoI GCGC 2 cut(s) 765, 871
Cfr13I GGNCC 3 cut(s) 140, 489, 618
Csp6I GTAC 1 cut(s) 443
CviAII CATG 2 cut(s) 22, 691
CviQI GTAC 1 cut(s) 443
DdeI CTNAG 3 cut(s) 424, 894, 900
DpnI GATC 5 cut(s) 10, 80, 194, 255, 456
DpnII GATC 5 cut(s) 8, 78, 192, 253, 454
Eco130I CCWWGG 3 cut(s) 21, 702, 772
Eco24I GRGCYC 1 cut(s) 71
Eco31I GGTCTC 1 cut(s) 884
Eco47I GGWCC 1 cut(s) 618
Eco47III AGCGCT 1 cut(s) 870
Eco88I CYCGRG 1 cut(s) 881
EcoO109I RGGNCCY 2 cut(s) 489, 618
EcoRII CCWGG 3 cut(s) 604, 613, 873
EcoT14I CCWWGG 3 cut(s) 21, 702, 772
EcoT22I ATGCAT 2 cut(s) 6, 696
EcoT38I GRGCYC 1 cut(s) 71
ErhI CCWWGG 3 cut(s) 21, 702, 772
FaeI CATG 2 cut(s) 25, 694
FaqI GGGAC 2 cut(s) 631, 820
FatI CATG 2 cut(s) 21, 690
FauI CCCGC 1 cut(s) 51
Fnu4HI GCNGC 3 cut(s) 18, 566, 711
FokI GGATG 1 cut(s) 815
FriOI GRGCYC 1 cut(s) 71
Fsp4HI GCNGC 3 cut(s) 18, 566, 711
GlaI GCGC 2 cut(s) 764, 870
GluI GCNGC 3 cut(s) 18, 566, 711
GsaI CCCAGC 1 cut(s) 680
GsuI CTGGAG 2 cut(s) 33, 857
HaeII RGCGCY 2 cut(s) 766, 872
HaeIII GGCC 3 cut(s) 141, 283, 491
HapII CCGG 4 cut(s) 143, 258, 373, 382
HhaI GCGC 2 cut(s) 765, 871
Hin1II CATG 2 cut(s) 25, 694
Hin6I GCGC 2 cut(s) 763, 869
HinP1I GCGC 2 cut(s) 763, 869
HinfI GANTC 4 cut(s) 167, 369, 652, 908
HpaII CCGG 4 cut(s) 143, 258, 373, 382
HphI GGTGA 2 cut(s) 226, 449
Hpy166II GTNNAC 1 cut(s) 443
Hpy188I TCNGA 4 cut(s) 331, 366, 756, 844
Hpy188III TCNNGA 2 cut(s) 12, 881
Hpy8I GTNNAC 1 cut(s) 443
Hpy99I CGWCG 1 cut(s) 861
HpyAV CCTTC 1 cut(s) 587
HpyCH4III ACNGT 2 cut(s) 121, 547
HpyCH4IV ACGT 2 cut(s) 110, 530
HpyF10VI GCNNNNNNNGC 4 cut(s) 23, 152, 387, 420
HpyF3I CTNAG 3 cut(s) 424, 894, 900
HpySE526I ACGT 2 cut(s) 110, 530
Hsp92II CATG 2 cut(s) 25, 694
HspAI GCGC 2 cut(s) 763, 869
KflI GGGWCCC 1 cut(s) 618
Kzo9I GATC 5 cut(s) 8, 78, 192, 253, 454
LmnI GCTCC 2 cut(s) 14, 876
Lsp1109I GCAGC 3 cut(s) 4, 552, 697
LweI GCATC 1 cut(s) 207
MaeII ACGT 2 cut(s) 110, 530
MaeIII GTNAC 3 cut(s) 106, 230, 550
MalI GATC 5 cut(s) 10, 80, 194, 255, 456
MboI GATC 5 cut(s) 8, 78, 192, 253, 454
MboII GAAGA 5 cut(s) 308, 503, 754, 857, 860
MflI RGATCY 2 cut(s) 8, 253
MhlI GDGCHC 1 cut(s) 71
MluCI AATT 6 cut(s) 133, 274, 332, 478, 496, 787
MlyI GAGTC 2 cut(s) 378, 902
MnlI CCTC 6 cut(s) 92, 273, 296, 301, 417, 724
Mph1103I ATGCAT 2 cut(s) 6, 696
MroXI GAANNNNTTC 1 cut(s) 35
MseI TTAA 3 cut(s) 477, 494, 668
MslI CAYNNNNRTG 1 cut(s) 462
MspA1I CMGCKG 1 cut(s) 287
MspI CCGG 4 cut(s) 143, 258, 373, 382
MspR9I CCNGG 5 cut(s) 143, 258, 606, 615, 875
Mva1269I GAATGC 1 cut(s) 581
MvaI CCWGG 3 cut(s) 606, 615, 875
MwoI GCNNNNNNNGC 4 cut(s) 23, 152, 387, 420
NciI CCSGG 2 cut(s) 143, 258
NcoI CCATGG 1 cut(s) 21
NdeII GATC 5 cut(s) 8, 78, 192, 253, 454
NlaIII CATG 2 cut(s) 25, 694
NlaIV GGNNCC 4 cut(s) 255, 490, 619, 620
NmuCI GTSAC 1 cut(s) 106
NsiI ATGCAT 2 cut(s) 6, 696
OliI CACNNNNGTG 1 cut(s) 462
PaeR7I CTCGAG 1 cut(s) 881
PctI GAATGC 1 cut(s) 581
PdmI GAANNNNTTC 1 cut(s) 35
PfeI GAWTC 2 cut(s) 167, 652
PflMI CCANNNNNTGG 2 cut(s) 27, 323
PkrI GCNGC 3 cut(s) 19, 567, 712
PleI GAGTC 2 cut(s) 377, 902
PpsI GAGTC 2 cut(s) 377, 902
PpuMI RGGWCCY 1 cut(s) 618
PshAI GACNNNNGTC 1 cut(s) 774
Psp5II RGGWCCY 1 cut(s) 618
Psp6I CCWGG 3 cut(s) 604, 613, 873
PspFI CCCAGC 1 cut(s) 676
PspGI CCWGG 3 cut(s) 604, 613, 873
PspN4I GGNNCC 4 cut(s) 255, 490, 619, 620
PspPI GGNCC 3 cut(s) 140, 489, 618
PspPPI RGGWCCY 1 cut(s) 618
PsuI RGATCY 2 cut(s) 8, 253
PvuII CAGCTG 1 cut(s) 287
RsaI GTAC 1 cut(s) 444
RsaNI GTAC 1 cut(s) 443
RseI CAYNNNNRTG 1 cut(s) 462
SaqAI TTAA 3 cut(s) 477, 494, 668
SatI GCNGC 3 cut(s) 18, 566, 711
Sau3AI GATC 5 cut(s) 8, 78, 192, 253, 454
Sau96I GGNCC 3 cut(s) 140, 489, 618
SchI GAGTC 2 cut(s) 378, 902
ScrFI CCNGG 5 cut(s) 143, 258, 606, 615, 875
SduI GDGCHC 1 cut(s) 71
SfaNI GCATC 1 cut(s) 207
Sfr274I CTCGAG 1 cut(s) 881
SinI GGWCC 1 cut(s) 618
SlaI CTCGAG 1 cut(s) 881
SmiMI CAYNNNNRTG 1 cut(s) 462
SmlI CTYRAG 2 cut(s) 536, 881
SmoI CTYRAG 2 cut(s) 536, 881
Sse9I AATT 6 cut(s) 133, 274, 332, 478, 496, 787
SsiI CCGC 2 cut(s) 58, 436
SspI AATATT 1 cut(s) 506
StyD4I CCNGG 5 cut(s) 141, 256, 604, 613, 873
StyI CCWWGG 3 cut(s) 21, 702, 772
TaaI ACNGT 2 cut(s) 121, 547
TaiI ACGT 2 cut(s) 113, 533
TaqI TCGA 3 cut(s) 729, 778, 882
TasI AATT 6 cut(s) 133, 274, 332, 478, 496, 787
TatI WGTACW 1 cut(s) 442
TfiI GAWTC 2 cut(s) 167, 652
Tru1I TTAA 3 cut(s) 477, 494, 668
Tru9I TTAA 3 cut(s) 477, 494, 668
TscAI CASTG 1 cut(s) 124
TseFI GTSAC 1 cut(s) 106
TseI GCWGC 3 cut(s) 17, 565, 710
Tsp45I GTSAC 1 cut(s) 106
TspDTI ATGAA 3 cut(s) 309, 565, 817
TspGWI ACGGA 2 cut(s) 266, 874
TspRI CASTG 1 cut(s) 124
Van91I CCANNNNNTGG 2 cut(s) 27, 323
VpaK11BI GGWCC 1 cut(s) 618
XapI RAATTY 2 cut(s) 332, 787
XhoI CTCGAG 1 cut(s) 881
XmnI GAANNNNTTC 1 cut(s) 35
Zsp2I ATGCAT 2 cut(s) 6, 696
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.