Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0014961

Physical Location & Seq

Genomic Coordinates Reverse (-)

20157822 .. 20163475

Gene Structure 5654 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G144500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGCATAGATCTGGTGTGACCATGGCTTGGAACGTGTTCAAGTTCTGCACAGCTTTGCGAGGTTTGGGGTCAGTCATGATCCTCCTGGTGCTTGGGGTCGTAGGTGTCACCTATTACACTGTCGTTTTGACTAATTATGGCCCGGCTTTGTACAACGGTGGCCTTGACTCTCTCATTGCTCTTGTTGTATTGATCTTGTTCCATTGCTTGTTGGTGATGCTCTTATGGAGCTACTTTTCTGTTGTTTTGACGGATCCCGGTTGCGTGCCACCTAACTGGAGGCCTGCTGTTGATGAAGAGAGAGGGGAGGCTGACCCCTTGACTGGGTCGGATTTTAGTGGTTTGCAGACTGACCCATCTAATCAAAGAATCCGGTATTGCCGGAAGTGCAACCAGCTGAAACCACCTCGTTGCCATCATTGCTCAGTTTGTGGGCGGTGTGTACTGAAAATGGATCACCATTGTGTATGGGTTGTAAATTGTGTTGGGGCCTTAAATTACAAGTATTTTCTACTTTTCTTGTTTTACACATTTCTGGAGACAAGTGTTGTAACTTTATCCTTGCTGCCACATTTTATTTCATTCTTTAGTGAAGGAGAAATACCTGGAACACCTAGCACCCTTGCAACTACCTTTCTTGCTTTTGTGTTAAATCTTGCATTTGCATTAAGCGTTTTGGGGTTTCTGATCATGCATATATCGTTAGTGGCTGCAAATACCACAACCATTGAGGCATATGAGAAGAAAACCTCTCCTAAATGGCGCTATGACCTTGGTCGAAAGAAGAATTTTGAACAGGTTTTTGGTATGGACAAACGATACTGGTTCATCCCTGCTTATTCCGAAGAAGATTTGCGACGCATACCAGCGCTGCAGGGTCTTGAGTATCCGTCGAGGCCTGAGTTTAACTCCCAAGAGTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000138 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005794 GO:0005795 GO:0005802 GO:0007275 GO:0007568 GO:0008150 GO:0010150 GO:0012505 GO:0016417 GO:0016740 GO:0016746 GO:0016747 GO:0019222 GO:0019707 GO:0031323 GO:0031410 GO:0031982 GO:0031984 GO:0031985 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051239 GO:0065007 GO:0090693 GO:0097708 GO:0098791 GO:0099402 GO:0140096 GO:1900055 GO:2000024 GO:2000026 GO:2000377

KEGG Pathways

Metabolic & Signaling

ko00100 ko01100 ko01110 map00100 map01100 map01110

Pfam Domains

Protein Families

DHHC

Protein Analysis

308

Amino Acids

34.76

Weight (kDa)

7.97

Isoelectric Point (pI)

39.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014961)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60800
fragaria_vesca	FvH4_7g11740
malus_domestica	MD02G1205100.v1.1 MD07G1121600.v1.1
prunus_persica	Prupe.2G144500_v2.0.a1
pyrus_communis	pycom07g10370
rosa_chinensis	RchiOBHm_Chr1g0350251
rosa_laevigata	RLG00000028496
rosa_multiflora	Rmu_sc0001037.1_g000009
rosa_roxburghii	Rroxscaffold_4G00304950
rosa_rugosa	Rorug01G0210300 Rorug01G0210400
rosa_samantha	Rh1AG225400 Rh1BG193300
rosa_wichuraiana	Rw0G018800 Rw1G019380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	27
AciI	CCGC	1 cut(s)	436
AclWI	GGATC	4 cut(s)	73, 248, 261, 462
AcsI	RAATTY	1 cut(s)	787
AfaI	GTAC	2 cut(s)	152, 444
AfeI	AGCGCT	1 cut(s)	870
AfiI	CCNNNNNNNGG	3 cut(s)	27, 323, 324
AflIII	ACRYGT	1 cut(s)	33
AgsI	TTSAA	2 cut(s)	40, 794
AjnI	CCWGG	2 cut(s)	84, 604
AjuI	GAANNNNNNNTTGG	2 cut(s)	786, 818
AleI	CACNNNNGTG	1 cut(s)	462
AluBI	AGCT	3 cut(s)	53, 231, 397
AluI	AGCT	3 cut(s)	53, 231, 397
Alw26I	GTCTC	1 cut(s)	533
AlwI	GGATC	4 cut(s)	73, 248, 261, 462
Aor51HI	AGCGCT	1 cut(s)	870
AoxI	GGCC	5 cut(s)	139, 160, 281, 489, 896
ApeKI	GCWGC	3 cut(s)	565, 710, 871
ApoI	RAATTY	1 cut(s)	787
Asp700I	GAANNNNTTC	1 cut(s)	35
AspLEI	GCGC	2 cut(s)	765, 871
AspS9I	GGNCC	2 cut(s)	140, 489
AsuC2I	CCSGG	2 cut(s)	143, 258
AsuHPI	GGTGA	3 cut(s)	100, 226, 449
BamHI	GGATCC	1 cut(s)	253
BarI	GAAGNNNNNNTAC	2 cut(s)	585, 617
BbvI	GCAGC	3 cut(s)	552, 697, 858
BccI	CCATC	2 cut(s)	364, 423
BciT130I	CCWGG	2 cut(s)	86, 606
BciVI	GTATCC	1 cut(s)	897
BclI	TGATCA	1 cut(s)	687
BcnI	CCSGG	2 cut(s)	143, 258
BcoDI	GTCTC	1 cut(s)	533
BfaI	CTAG	1 cut(s)	615
BfmI	CTRYAG	1 cut(s)	872
BfoI	RGCGCY	2 cut(s)	766, 872
BfuI	GTATCC	1 cut(s)	897
BglII	AGATCT	1 cut(s)	8
BisI	GCNGC	3 cut(s)	566, 711, 872
BlsI	GCNGC	3 cut(s)	567, 712, 873
Bme1390I	CCNGG	4 cut(s)	86, 143, 258, 606
BmgT120I	GGNCC	2 cut(s)	140, 489
BmiI	GGNNCC	2 cut(s)	255, 490
BmrFI	CCNGG	4 cut(s)	86, 143, 258, 606
BmrI	ACTGGG	1 cut(s)	333
BmsI	GCATC	1 cut(s)	207
BmuI	ACTGGG	1 cut(s)	333
BoxI	GACNNNNGTC	1 cut(s)	774
BplI	GAGNNNNNCTC	1 cut(s)	893
BpmI	CTGGAG	2 cut(s)	298, 557
BpuEI	CTTGAG	1 cut(s)	902
BpuMI	CCSGG	2 cut(s)	143, 258
BsaJI	CCNNGG	2 cut(s)	21, 772
BsaWI	WCCGGW	1 cut(s)	372
Bsc4I	CCNNNNNNNGG	3 cut(s)	27, 323, 324
Bse1I	ACTGG	3 cut(s)	281, 328, 827
Bse3DI	GCAATG	3 cut(s)	174, 202, 418
BseBI	CCWGG	2 cut(s)	86, 606
BseDI	CCNNGG	2 cut(s)	21, 772
BseGI	GGATG	1 cut(s)	828
BseLI	CCNNNNNNNGG	3 cut(s)	27, 323, 324
BseMI	GCAATG	3 cut(s)	174, 202, 418
BseMII	CTCAG	2 cut(s)	438, 891
BseNI	ACTGG	3 cut(s)	281, 328, 827
BseXI	GCAGC	3 cut(s)	552, 697, 858
BsgI	GTGCAG	1 cut(s)	31
BshFI	GGCC	5 cut(s)	141, 162, 283, 491, 898
BsiSI	CCGG	4 cut(s)	143, 258, 373, 382
BslI	CCNNNNNNNGG	3 cut(s)	27, 323, 324
BsmAI	GTCTC	1 cut(s)	533
BsnI	GGCC	5 cut(s)	141, 162, 283, 491, 898
Bsp1407I	TGTACA	1 cut(s)	150
Bsp143I	GATC	6 cut(s)	8, 78, 192, 253, 454, 687
Bsp19I	CCATGG	1 cut(s)	21
BspACI	CCGC	1 cut(s)	436
BspANI	GGCC	5 cut(s)	141, 162, 283, 491, 898
BspCNI	CTCAG	2 cut(s)	437, 892
BspHI	TCATGA	1 cut(s)	75
BspLI	GGNNCC	2 cut(s)	255, 490
BspMAI	CTGCAG	1 cut(s)	876
BspPI	GGATC	4 cut(s)	73, 248, 261, 462
BsrDI	GCAATG	3 cut(s)	174, 202, 418
BsrGI	TGTACA	1 cut(s)	150
BsrI	ACTGG	3 cut(s)	281, 328, 827
BssECI	CCNNGG	2 cut(s)	21, 772
BssMI	GATC	6 cut(s)	8, 78, 192, 253, 454, 687
BssT1I	CCWWGG	2 cut(s)	21, 772
Bst2UI	CCWGG	2 cut(s)	86, 606
Bst4CI	ACNGT	2 cut(s)	121, 158
Bst6I	CTCTTC	1 cut(s)	291
BstAUI	TGTACA	1 cut(s)	150
BstC8I	GCNNGC	2 cut(s)	266, 285
BstDEI	CTNAG	2 cut(s)	424, 900
BstDSI	CCRYGG	1 cut(s)	21
BstF5I	GGATG	1 cut(s)	828
BstH2I	RGCGCY	2 cut(s)	766, 872
BstHHI	GCGC	2 cut(s)	765, 871
BstKTI	GATC	6 cut(s)	11, 81, 195, 256, 457, 690
BstMAI	GTCTC	1 cut(s)	533
BstMBI	GATC	6 cut(s)	8, 78, 192, 253, 454, 687
BstMWI	GCNNNNNNNGC	2 cut(s)	387, 420
BstNI	CCWGG	2 cut(s)	86, 606
BstPAI	GACNNNNGTC	1 cut(s)	774
BstSCI	CCNGG	4 cut(s)	84, 141, 256, 604
BstSFI	CTRYAG	1 cut(s)	872
BstV1I	GCAGC	3 cut(s)	552, 697, 858
BstX2I	RGATCY	2 cut(s)	8, 253
BstXI	CCANNNNNNTGG	1 cut(s)	276
BstYI	RGATCY	2 cut(s)	8, 253
BsuI	GTATCC	1 cut(s)	897
BsuRI	GGCC	5 cut(s)	141, 162, 283, 491, 898
BtgI	CCRYGG	1 cut(s)	21
BtsCI	GGATG	1 cut(s)	828
BtsIMutI	CAGTG	1 cut(s)	117
Cac8I	GCNNGC	2 cut(s)	266, 285
CciI	TCATGA	1 cut(s)	75
CfoI	GCGC	2 cut(s)	765, 871
Cfr13I	GGNCC	2 cut(s)	140, 489
CseI	GACGC	1 cut(s)	867
Csp6I	GTAC	2 cut(s)	151, 443
CspCI	CAANNNNNGTGG	2 cut(s)	709, 744
CviAII	CATG	3 cut(s)	22, 76, 691
CviQI	GTAC	2 cut(s)	151, 443
DdeI	CTNAG	2 cut(s)	424, 900
DpnI	GATC	6 cut(s)	10, 80, 194, 255, 456, 689
DpnII	GATC	6 cut(s)	8, 78, 192, 253, 454, 687
Eam1104I	CTCTTC	1 cut(s)	291
EarI	CTCTTC	1 cut(s)	291
Eco130I	CCWWGG	2 cut(s)	21, 772
Eco147I	AGGCCT	2 cut(s)	283, 898
Eco47III	AGCGCT	1 cut(s)	870
EcoO109I	RGGNCCY	1 cut(s)	489
EcoRII	CCWGG	2 cut(s)	84, 604
EcoT14I	CCWWGG	2 cut(s)	21, 772
EcoT22I	ATGCAT	2 cut(s)	6, 696
ErhI	CCWWGG	2 cut(s)	21, 772
FaeI	CATG	3 cut(s)	25, 79, 694
FatI	CATG	3 cut(s)	21, 75, 690
FauNDI	CATATG	1 cut(s)	736
FbaI	TGATCA	1 cut(s)	687
Fnu4HI	GCNGC	3 cut(s)	566, 711, 872
FokI	GGATG	1 cut(s)	815
Fsp4HI	GCNGC	3 cut(s)	566, 711, 872
FspBI	CTAG	1 cut(s)	615
GlaI	GCGC	2 cut(s)	764, 870
GluI	GCNGC	3 cut(s)	566, 711, 872
GsuI	CTGGAG	2 cut(s)	298, 557
HaeII	RGCGCY	2 cut(s)	766, 872
HaeIII	GGCC	5 cut(s)	141, 162, 283, 491, 898
HapII	CCGG	4 cut(s)	143, 258, 373, 382
HgaI	GACGC	1 cut(s)	867
HhaI	GCGC	2 cut(s)	765, 871
Hin1II	CATG	3 cut(s)	25, 79, 694
Hin6I	GCGC	2 cut(s)	763, 869
HinP1I	GCGC	2 cut(s)	763, 869
HinfI	GANTC	2 cut(s)	167, 369
HpaII	CCGG	4 cut(s)	143, 258, 373, 382
HphI	GGTGA	3 cut(s)	100, 226, 449
Hpy166II	GTNNAC	1 cut(s)	443
Hpy188I	TCNGA	4 cut(s)	331, 687, 844, 923
Hpy188III	TCNNGA	3 cut(s)	76, 536, 881
Hpy8I	GTNNAC	1 cut(s)	443
Hpy99I	CGWCG	2 cut(s)	861, 895
HpyAV	CCTTC	1 cut(s)	587
HpyCH4III	ACNGT	2 cut(s)	121, 158
HpyCH4IV	ACGT	1 cut(s)	33
HpyF10VI	GCNNNNNNNGC	2 cut(s)	387, 420
HpyF3I	CTNAG	2 cut(s)	424, 900
HpySE526I	ACGT	1 cut(s)	33
Hsp92II	CATG	3 cut(s)	25, 79, 694
HspAI	GCGC	2 cut(s)	763, 869
Ksp22I	TGATCA	1 cut(s)	687
Kzo9I	GATC	6 cut(s)	8, 78, 192, 253, 454, 687
LmnI	GCTCC	1 cut(s)	228
Lsp1109I	GCAGC	3 cut(s)	552, 697, 858
LweI	GCATC	1 cut(s)	207
MaeI	CTAG	1 cut(s)	615
MaeII	ACGT	1 cut(s)	33
MaeIII	GTNAC	3 cut(s)	16, 106, 550
MalI	GATC	6 cut(s)	10, 80, 194, 255, 456, 689
MboI	GATC	6 cut(s)	8, 78, 192, 253, 454, 687
MboII	GAAGA	5 cut(s)	308, 754, 796, 857, 860
MflI	RGATCY	2 cut(s)	8, 253
MluCI	AATT	4 cut(s)	133, 478, 496, 787
MlyI	GAGTC	1 cut(s)	161
MmeI	TCCRAC	1 cut(s)	309
MnlI	CCTC	9 cut(s)	53, 92, 273, 296, 301, 417, 724, 760, 888
Mph1103I	ATGCAT	2 cut(s)	6, 696
MroXI	GAANNNNTTC	1 cut(s)	35
MseI	TTAA	4 cut(s)	494, 650, 668, 906
MslI	CAYNNNNRTG	1 cut(s)	462
MspA1I	CMGCKG	1 cut(s)	397
MspI	CCGG	4 cut(s)	143, 258, 373, 382
MspR9I	CCNGG	4 cut(s)	86, 143, 258, 606
MvaI	CCWGG	2 cut(s)	86, 606
MwoI	GCNNNNNNNGC	2 cut(s)	387, 420
NciI	CCSGG	2 cut(s)	143, 258
NcoI	CCATGG	1 cut(s)	21
NdeI	CATATG	1 cut(s)	736
NdeII	GATC	6 cut(s)	8, 78, 192, 253, 454, 687
NlaIII	CATG	3 cut(s)	25, 79, 694
NlaIV	GGNNCC	2 cut(s)	255, 490
NmuCI	GTSAC	2 cut(s)	16, 106
NsiI	ATGCAT	2 cut(s)	6, 696
OliI	CACNNNNGTG	1 cut(s)	462
PagI	TCATGA	1 cut(s)	75
PceI	AGGCCT	2 cut(s)	283, 898
PdmI	GAANNNNTTC	1 cut(s)	35
PfeI	GAWTC	1 cut(s)	369
PflFI	GACNNNGTC	1 cut(s)	325
PflMI	CCANNNNNTGG	1 cut(s)	27
PkrI	GCNGC	3 cut(s)	567, 712, 873
PleI	GAGTC	1 cut(s)	161
PpsI	GAGTC	1 cut(s)	161
PshAI	GACNNNNGTC	1 cut(s)	774
Psp6I	CCWGG	2 cut(s)	84, 604
PspGI	CCWGG	2 cut(s)	84, 604
PspN4I	GGNNCC	2 cut(s)	255, 490
PspPI	GGNCC	2 cut(s)	140, 489
PstI	CTGCAG	1 cut(s)	876
PsuI	RGATCY	2 cut(s)	8, 253
PsyI	GACNNNGTC	1 cut(s)	325
PvuII	CAGCTG	1 cut(s)	397
RsaI	GTAC	2 cut(s)	152, 444
RsaNI	GTAC	2 cut(s)	151, 443
RseI	CAYNNNNRTG	1 cut(s)	462
SaqAI	TTAA	4 cut(s)	494, 650, 668, 906
SatI	GCNGC	3 cut(s)	566, 711, 872
Sau3AI	GATC	6 cut(s)	8, 78, 192, 253, 454, 687
Sau96I	GGNCC	2 cut(s)	140, 489
SchI	GAGTC	1 cut(s)	161
ScrFI	CCNGG	4 cut(s)	86, 143, 258, 606
SfaNI	GCATC	1 cut(s)	207
SfcI	CTRYAG	1 cut(s)	872
SmiMI	CAYNNNNRTG	1 cut(s)	462
SmlI	CTYRAG	1 cut(s)	881
SmoI	CTYRAG	1 cut(s)	881
Sse9I	AATT	4 cut(s)	133, 478, 496, 787
SseBI	AGGCCT	2 cut(s)	283, 898
SsiI	CCGC	1 cut(s)	436
SspMI	CTAG	1 cut(s)	615
StuI	AGGCCT	2 cut(s)	283, 898
StyD4I	CCNGG	4 cut(s)	84, 141, 256, 604
StyI	CCWWGG	2 cut(s)	21, 772
TaaI	ACNGT	2 cut(s)	121, 158
TaiI	ACGT	1 cut(s)	36
TaqI	TCGA	2 cut(s)	778, 893
TasI	AATT	4 cut(s)	133, 478, 496, 787
TatI	WGTACW	2 cut(s)	150, 442
TfiI	GAWTC	1 cut(s)	369
Tru1I	TTAA	4 cut(s)	494, 650, 668, 906
Tru9I	TTAA	4 cut(s)	494, 650, 668, 906
TscAI	CASTG	1 cut(s)	124
TseFI	GTSAC	2 cut(s)	16, 106
TseI	GCWGC	3 cut(s)	565, 710, 871
Tsp45I	GTSAC	2 cut(s)	16, 106
TspDTI	ATGAA	3 cut(s)	309, 570, 817
TspGWI	ACGGA	2 cut(s)	266, 879
TspRI	CASTG	1 cut(s)	124
Tth111I	GACNNNGTC	1 cut(s)	325
Van91I	CCANNNNNTGG	1 cut(s)	27
XapI	RAATTY	1 cut(s)	787
XmnI	GAANNNNTTC	1 cut(s)	35
XspI	CTAG	1 cut(s)	615
Zsp2I	ATGCAT	2 cut(s)	6, 696

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.