Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0014961

Physical Location & Seq

Genomic Coordinates Reverse (-)

10259605 .. 10264979

Gene Structure 5375 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g10370.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGCATAGATCTGGAGTGGCCATGGCTTGGAACGTGTTCAAGTTCTGCACAGCTTTGCGAGGTCTGGGCTCGGTCATGATCCTCCTTGTTCTTGGGGTCGTCGGTGTCACATATTACACTGTCGTTTTGACCAATTATGGCCCGGCTTTGTACGACGGCGGCCTTGACTCTCTCATTGCTGTTGCCGTATTGGTCTTATTTCATTGCTTGTTGGTGATGCTATTGTGGAGTTACTTTTCTGTTGTTTTGACGGATCCGGGGGGTGTGCCACCTAATTGGAGGCCTGCTGTGGATGAAGAGAGAGGGGAGGCTGACCCATTGACTGGGTTGGATTTTAATGGTTTGCAGCCTGACCCCTCTAATCAGAGAATCCGGTATTGCCGGAAGTGCAACCAGCTGAAACCACCTCGTTGCCATCATTGCTCAGTTTGTGGGCGGTGTGTACTGAAAATGGATCACCATTGTGTATGGGTTGTTAATTGTGTTGGGGCCTTAAATTACAAGTATTTTCTTCTTTTCTTGTTTTACACGTTTCTCGAGACAAGTGTTGTAGCATTATCCTTGCTGCCACATTTTATTTTGTTCTTTAGCGAGGGAGAAATACCTGGAACACCTAGCACCCTTGCAACTACCTTTCTTGCTTTTGTCTTGAATCTTGCGTTTGCATTAAGTGTTTTGGGTTTTCTGGTCATGCATATATCATTGGTGGCTGCAAACACCACAACCATTGAGGCATATGAAAAGAAAACCTCTCCTAAATGGCGCTATGACCTTGGTCGAAAAAAGAATTTTGAACAGGTGTTTGGGACAGACAAACGATACTGGTTCATCCCCGCTTACTCGGATGAAGATTTACGGCGGATACCAGCACTTCAGGGTCTTGAGTATCCATCTAAGCCGGAGTTTGATTCCCAAGAGTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000138 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005794 GO:0005795 GO:0005802 GO:0007275 GO:0007568 GO:0008150 GO:0010150 GO:0012505 GO:0016417 GO:0016740 GO:0016746 GO:0016747 GO:0019222 GO:0019707 GO:0031323 GO:0031410 GO:0031982 GO:0031984 GO:0031985 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051239 GO:0065007 GO:0090693 GO:0097708 GO:0098791 GO:0099402 GO:0140096 GO:1900055 GO:2000024 GO:2000026 GO:2000377

KEGG Pathways

Metabolic & Signaling

ko00100 ko01100 ko01110 map00100 map01100 map01110

Pfam Domains

Protein Families

DHHC

Protein Analysis

308

Amino Acids

34.59

Weight (kDa)

7.05

Isoelectric Point (pI)

39.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014961)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60800
fragaria_vesca	FvH4_7g11740
malus_domestica	MD02G1205100.v1.1 MD07G1121600.v1.1
prunus_persica	Prupe.2G144500_v2.0.a1
pyrus_communis	pycom07g10370
rosa_chinensis	RchiOBHm_Chr1g0350251
rosa_laevigata	RLG00000028496
rosa_multiflora	Rmu_sc0001037.1_g000009
rosa_roxburghii	Rroxscaffold_4G00304950
rosa_rugosa	Rorug01G0210300 Rorug01G0210400
rosa_samantha	Rh1AG225400 Rh1BG193300
rosa_wichuraiana	Rw0G018800 Rw1G019380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	27, 323
AciI	CCGC	4 cut(s)	159, 436, 834, 859
AclWI	GGATC	4 cut(s)	73, 248, 261, 462
AcoI	YGGCCR	1 cut(s)	18
AcsI	RAATTY	1 cut(s)	787
AcuI	CTGAAG	1 cut(s)	857
AfaI	GTAC	2 cut(s)	152, 444
AfiI	CCNNNNNNNGG	2 cut(s)	27, 323
AflIII	ACRYGT	2 cut(s)	33, 528
AgsI	TTSAA	3 cut(s)	40, 652, 794
AjnI	CCWGG	1 cut(s)	604
AjuI	GAANNNNNNNTTGG	2 cut(s)	786, 818
AleI	CACNNNNGTG	1 cut(s)	462
AluBI	AGCT	2 cut(s)	53, 397
AluI	AGCT	2 cut(s)	53, 397
Alw26I	GTCTC	1 cut(s)	533
AlwI	GGATC	4 cut(s)	73, 248, 261, 462
Ama87I	CYCGRG	1 cut(s)	536
AoxI	GGCC	5 cut(s)	18, 139, 160, 281, 489
ApeKI	GCWGC	3 cut(s)	346, 565, 710
ApoI	RAATTY	1 cut(s)	787
Asp700I	GAANNNNTTC	1 cut(s)	35
AspLEI	GCGC	1 cut(s)	765
AspS9I	GGNCC	2 cut(s)	140, 489
AsuC2I	CCSGG	2 cut(s)	143, 258
AsuHPI	GGTGA	2 cut(s)	226, 449
AvaI	CYCGRG	1 cut(s)	536
BalI	TGGCCA	1 cut(s)	20
BamHI	GGATCC	1 cut(s)	253
BanII	GRGCYC	1 cut(s)	71
BbvI	GCAGC	3 cut(s)	358, 552, 697
BccI	CCATC	2 cut(s)	423, 898
BceAI	ACGGC	3 cut(s)	170, 172, 872
BciT130I	CCWGG	1 cut(s)	606
BciVI	GTATCC	2 cut(s)	855, 897
BcnI	CCSGG	2 cut(s)	143, 258
BcoDI	GTCTC	1 cut(s)	533
BfaI	CTAG	1 cut(s)	615
BfoI	RGCGCY	1 cut(s)	766
BfuI	GTATCC	2 cut(s)	855, 897
BglII	AGATCT	1 cut(s)	8
BisI	GCNGC	4 cut(s)	160, 347, 566, 711
BlsI	GCNGC	4 cut(s)	161, 348, 567, 712
Bme1390I	CCNGG	3 cut(s)	143, 258, 606
BmeT110I	CYCGRG	1 cut(s)	536
BmgT120I	GGNCC	2 cut(s)	140, 489
BmiI	GGNNCC	2 cut(s)	255, 490
BmrFI	CCNGG	3 cut(s)	143, 258, 606
BmrI	ACTGGG	1 cut(s)	333
BmsI	GCATC	1 cut(s)	207
BmuI	ACTGGG	1 cut(s)	333
BoxI	GACNNNNGTC	1 cut(s)	774
BpmI	CTGGAG	1 cut(s)	33
BpuEI	CTTGAG	1 cut(s)	902
BpuMI	CCSGG	2 cut(s)	143, 258
BsaJI	CCNNGG	3 cut(s)	21, 257, 772
BsaWI	WCCGGW	1 cut(s)	372
Bsc4I	CCNNNNNNNGG	2 cut(s)	27, 323
Bse1I	ACTGG	2 cut(s)	328, 827
Bse3DI	GCAATG	3 cut(s)	174, 202, 418
BseBI	CCWGG	1 cut(s)	606
BseDI	CCNNGG	3 cut(s)	21, 257, 772
BseGI	GGATG	3 cut(s)	298, 828, 850
BseLI	CCNNNNNNNGG	2 cut(s)	27, 323
BseMI	GCAATG	3 cut(s)	174, 202, 418
BseMII	CTCAG	1 cut(s)	438
BseNI	ACTGG	2 cut(s)	328, 827
BseXI	GCAGC	3 cut(s)	358, 552, 697
BsgI	GTGCAG	1 cut(s)	31
BshFI	GGCC	5 cut(s)	20, 141, 162, 283, 491
BsiHKCI	CYCGRG	1 cut(s)	536
BsiSI	CCGG	5 cut(s)	143, 257, 373, 382, 899
BslFI	GGGAC	1 cut(s)	820
BslI	CCNNNNNNNGG	2 cut(s)	27, 323
BsmAI	GTCTC	1 cut(s)	533
BsmFI	GGGAC	1 cut(s)	820
BsnI	GGCC	5 cut(s)	20, 141, 162, 283, 491
BsoBI	CYCGRG	1 cut(s)	536
Bsp1286I	GDGCHC	1 cut(s)	71
Bsp143I	GATC	4 cut(s)	8, 78, 253, 454
Bsp19I	CCATGG	1 cut(s)	21
BspACI	CCGC	4 cut(s)	159, 436, 834, 859
BspANI	GGCC	5 cut(s)	20, 141, 162, 283, 491
BspCNI	CTCAG	1 cut(s)	437
BspHI	TCATGA	1 cut(s)	75
BspLI	GGNNCC	2 cut(s)	255, 490
BspPI	GGATC	4 cut(s)	73, 248, 261, 462
BsrDI	GCAATG	3 cut(s)	174, 202, 418
BsrI	ACTGG	2 cut(s)	328, 827
BssECI	CCNNGG	3 cut(s)	21, 257, 772
BssMI	GATC	4 cut(s)	8, 78, 253, 454
BssT1I	CCWWGG	2 cut(s)	21, 772
Bst2UI	CCWGG	1 cut(s)	606
Bst4CI	ACNGT	1 cut(s)	121
Bst6I	CTCTTC	1 cut(s)	291
BstC8I	GCNNGC	1 cut(s)	285
BstDEI	CTNAG	2 cut(s)	424, 894
BstDSI	CCRYGG	1 cut(s)	21
BstF5I	GGATG	3 cut(s)	298, 828, 850
BstH2I	RGCGCY	1 cut(s)	766
BstHHI	GCGC	1 cut(s)	765
BstKTI	GATC	4 cut(s)	11, 81, 256, 457
BstMAI	GTCTC	1 cut(s)	533
BstMBI	GATC	4 cut(s)	8, 78, 253, 454
BstMWI	GCNNNNNNNGC	2 cut(s)	387, 420
BstNI	CCWGG	1 cut(s)	606
BstPAI	GACNNNNGTC	1 cut(s)	774
BstSCI	CCNGG	3 cut(s)	141, 256, 604
BstV1I	GCAGC	3 cut(s)	358, 552, 697
BstX2I	RGATCY	2 cut(s)	8, 253
BstXI	CCANNNNNNTGG	1 cut(s)	276
BstYI	RGATCY	2 cut(s)	8, 253
BsuI	GTATCC	2 cut(s)	855, 897
BsuRI	GGCC	5 cut(s)	20, 141, 162, 283, 491
BtgI	CCRYGG	1 cut(s)	21
BtsCI	GGATG	3 cut(s)	298, 828, 850
BtsIMutI	CAGTG	1 cut(s)	117
Cac8I	GCNNGC	1 cut(s)	285
CciI	TCATGA	1 cut(s)	75
CfoI	GCGC	1 cut(s)	765
Cfr13I	GGNCC	2 cut(s)	140, 489
Csp6I	GTAC	2 cut(s)	151, 443
CspCI	CAANNNNNGTGG	2 cut(s)	709, 744
CviAII	CATG	3 cut(s)	22, 76, 691
CviQI	GTAC	2 cut(s)	151, 443
DdeI	CTNAG	2 cut(s)	424, 894
DpnI	GATC	4 cut(s)	10, 80, 255, 456
DpnII	GATC	4 cut(s)	8, 78, 253, 454
EaeI	YGGCCR	1 cut(s)	18
Eam1104I	CTCTTC	1 cut(s)	291
EarI	CTCTTC	1 cut(s)	291
EciI	GGCGGA	1 cut(s)	874
Eco130I	CCWWGG	2 cut(s)	21, 772
Eco147I	AGGCCT	1 cut(s)	283
Eco24I	GRGCYC	1 cut(s)	71
Eco57I	CTGAAG	1 cut(s)	857
Eco88I	CYCGRG	1 cut(s)	536
EcoO109I	RGGNCCY	1 cut(s)	489
EcoRII	CCWGG	1 cut(s)	604
EcoT14I	CCWWGG	2 cut(s)	21, 772
EcoT22I	ATGCAT	2 cut(s)	6, 696
EcoT38I	GRGCYC	1 cut(s)	71
ErhI	CCWWGG	2 cut(s)	21, 772
FaeI	CATG	3 cut(s)	25, 79, 694
FaqI	GGGAC	1 cut(s)	820
FatI	CATG	3 cut(s)	21, 75, 690
FauI	CCCGC	1 cut(s)	841
FauNDI	CATATG	1 cut(s)	736
Fnu4HI	GCNGC	4 cut(s)	160, 347, 566, 711
FokI	GGATG	3 cut(s)	305, 815, 857
FriOI	GRGCYC	1 cut(s)	71
Fsp4HI	GCNGC	4 cut(s)	160, 347, 566, 711
FspBI	CTAG	1 cut(s)	615
GlaI	GCGC	1 cut(s)	764
GluI	GCNGC	4 cut(s)	160, 347, 566, 711
GsuI	CTGGAG	1 cut(s)	33
HaeII	RGCGCY	1 cut(s)	766
HaeIII	GGCC	5 cut(s)	20, 141, 162, 283, 491
HapII	CCGG	5 cut(s)	143, 257, 373, 382, 899
HhaI	GCGC	1 cut(s)	765
Hin1II	CATG	3 cut(s)	25, 79, 694
Hin6I	GCGC	1 cut(s)	763
HinP1I	GCGC	1 cut(s)	763
HinfI	GANTC	4 cut(s)	167, 369, 652, 908
HpaII	CCGG	5 cut(s)	143, 257, 373, 382, 899
HphI	GGTGA	2 cut(s)	226, 449
Hpy166II	GTNNAC	1 cut(s)	443
Hpy188I	TCNGA	2 cut(s)	366, 844
Hpy188III	TCNNGA	6 cut(s)	12, 76, 536, 538, 649, 881
Hpy8I	GTNNAC	1 cut(s)	443
Hpy99I	CGWCG	2 cut(s)	104, 158
HpyCH4III	ACNGT	1 cut(s)	121
HpyCH4IV	ACGT	2 cut(s)	33, 530
HpyCH4V	TGCA	8 cut(s)	4, 48, 346, 390, 626, 665, 694, 713
HpyF10VI	GCNNNNNNNGC	2 cut(s)	387, 420
HpyF3I	CTNAG	2 cut(s)	424, 894
HpySE526I	ACGT	2 cut(s)	33, 530
Hsp92II	CATG	3 cut(s)	25, 79, 694
HspAI	GCGC	1 cut(s)	763
Kzo9I	GATC	4 cut(s)	8, 78, 253, 454
Lsp1109I	GCAGC	3 cut(s)	358, 552, 697
LweI	GCATC	1 cut(s)	207
MaeI	CTAG	1 cut(s)	615
MaeII	ACGT	2 cut(s)	33, 530
MaeIII	GTNAC	2 cut(s)	106, 230
MalI	GATC	4 cut(s)	10, 80, 255, 456
MboI	GATC	4 cut(s)	8, 78, 253, 454
MboII	GAAGA	3 cut(s)	308, 503, 860
MflI	RGATCY	2 cut(s)	8, 253
MhlI	GDGCHC	1 cut(s)	71
MlsI	TGGCCA	1 cut(s)	20
MluCI	AATT	5 cut(s)	133, 274, 478, 496, 787
MluNI	TGGCCA	1 cut(s)	20
MlyI	GAGTC	1 cut(s)	161
MmeI	TCCRAC	1 cut(s)	309
Mox20I	TGGCCA	1 cut(s)	20
Mph1103I	ATGCAT	2 cut(s)	6, 696
MroXI	GAANNNNTTC	1 cut(s)	35
MscI	TGGCCA	1 cut(s)	20
MseI	TTAA	4 cut(s)	336, 477, 494, 668
MslI	CAYNNNNRTG	1 cut(s)	462
Msp20I	TGGCCA	1 cut(s)	20
MspA1I	CMGCKG	1 cut(s)	397
MspI	CCGG	5 cut(s)	143, 257, 373, 382, 899
MspR9I	CCNGG	3 cut(s)	143, 258, 606
MvaI	CCWGG	1 cut(s)	606
MwoI	GCNNNNNNNGC	2 cut(s)	387, 420
NciI	CCSGG	2 cut(s)	143, 258
NcoI	CCATGG	1 cut(s)	21
NdeI	CATATG	1 cut(s)	736
NdeII	GATC	4 cut(s)	8, 78, 253, 454
NlaIII	CATG	3 cut(s)	25, 79, 694
NlaIV	GGNNCC	2 cut(s)	255, 490
NmuCI	GTSAC	1 cut(s)	106
NsiI	ATGCAT	2 cut(s)	6, 696
OliI	CACNNNNGTG	1 cut(s)	462
PaeR7I	CTCGAG	1 cut(s)	536
PagI	TCATGA	1 cut(s)	75
PceI	AGGCCT	1 cut(s)	283
PdmI	GAANNNNTTC	1 cut(s)	35
PfeI	GAWTC	3 cut(s)	369, 652, 908
PflMI	CCANNNNNTGG	2 cut(s)	27, 323
PkrI	GCNGC	4 cut(s)	161, 348, 567, 712
PleI	GAGTC	1 cut(s)	161
PpsI	GAGTC	1 cut(s)	161
PshAI	GACNNNNGTC	1 cut(s)	774
Psp6I	CCWGG	1 cut(s)	604
PspGI	CCWGG	1 cut(s)	604
PspN4I	GGNNCC	2 cut(s)	255, 490
PspPI	GGNCC	2 cut(s)	140, 489
PsuI	RGATCY	2 cut(s)	8, 253
PvuII	CAGCTG	1 cut(s)	397
RsaI	GTAC	2 cut(s)	152, 444
RsaNI	GTAC	2 cut(s)	151, 443
RseI	CAYNNNNRTG	1 cut(s)	462
SaqAI	TTAA	4 cut(s)	336, 477, 494, 668
SatI	GCNGC	4 cut(s)	160, 347, 566, 711
Sau3AI	GATC	4 cut(s)	8, 78, 253, 454
Sau96I	GGNCC	2 cut(s)	140, 489
SchI	GAGTC	1 cut(s)	161
ScrFI	CCNGG	3 cut(s)	143, 258, 606
SduI	GDGCHC	1 cut(s)	71
SfaNI	GCATC	1 cut(s)	207
Sfr274I	CTCGAG	1 cut(s)	536
SlaI	CTCGAG	1 cut(s)	536
SmiMI	CAYNNNNRTG	1 cut(s)	462
SmlI	CTYRAG	2 cut(s)	536, 881
SmoI	CTYRAG	2 cut(s)	536, 881
Sse9I	AATT	5 cut(s)	133, 274, 478, 496, 787
SseBI	AGGCCT	1 cut(s)	283
SsiI	CCGC	4 cut(s)	159, 436, 834, 859
SspMI	CTAG	1 cut(s)	615
StuI	AGGCCT	1 cut(s)	283
StyD4I	CCNGG	3 cut(s)	141, 256, 604
StyI	CCWWGG	2 cut(s)	21, 772
TaaI	ACNGT	1 cut(s)	121
TaiI	ACGT	2 cut(s)	36, 533
TaqI	TCGA	2 cut(s)	537, 778
TaqII	GACCGA	1 cut(s)	61
TasI	AATT	5 cut(s)	133, 274, 478, 496, 787
TatI	WGTACW	1 cut(s)	442
TauI	GCSGC	1 cut(s)	162
TfiI	GAWTC	3 cut(s)	369, 652, 908
Tru1I	TTAA	4 cut(s)	336, 477, 494, 668
Tru9I	TTAA	4 cut(s)	336, 477, 494, 668
TscAI	CASTG	1 cut(s)	124
TseFI	GTSAC	1 cut(s)	106
TseI	GCWGC	3 cut(s)	346, 565, 710
Tsp45I	GTSAC	1 cut(s)	106
TspDTI	ATGAA	5 cut(s)	191, 309, 753, 817, 861
TspGWI	ACGGA	1 cut(s)	266
TspRI	CASTG	1 cut(s)	124
Van91I	CCANNNNNTGG	2 cut(s)	27, 323
XapI	RAATTY	1 cut(s)	787
XhoI	CTCGAG	1 cut(s)	536
XmnI	GAANNNNTTC	1 cut(s)	35
XspI	CTAG	1 cut(s)	615
Zsp2I	ATGCAT	2 cut(s)	6, 696

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.