Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0014961

Physical Location & Seq

Genomic Coordinates Forward (+)

20518989 .. 20524134

Gene Structure 5146 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1205100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGCATAGATCGGGAGTCGCCATGGCTTGGAACGTGTTCAAGTTCTGCATAGTTTTGCGAGGTCTGGGGTCGGTCATGATCCTCCTGGTTCTTGGGGTCGTCGGTGTCACCTATTACACTGTCGTTTTCACCAATTACGGCCCGGCTTTGTACGATGGCGGCCTTGACTCTCTCATTGCCGTTGGCGTATTGATCATATTTCATTGCTTGTTGGTGATGCTGTTATGGAGTTATTTTTCTGTTGTTTTGACGGATCCGGGTGGTGTGCCACCTAATTGGAGGCCTGCTGTTGATGAAGAGAGAGGGCAGGCTGACCCATTGACTTGGTCGGATTTTAATGGTTTGCAGCCTGACCCCTCTAATCTGAGGATCCGGTACTGCCGGAAGTGCAACCAGCTGAAACCACCTCGTTGCCATCATTGCTCAGTTTGTGGGCGGTGTGTACTGAAAATGGATCACCATTGTGTATGGGTTGTTCATTGTGTTGGGGCCTTAAATTACAAGTATTTTCTTCTTTTCTTGTTTTACACATTTCTCGAGACAAGTGTTGTAACATTATCCTTGCTGCCACATTTGATATCATTCTTTAACGAGGGAGAAATCCCTGGAACACCTAGCACCCTTGCAACTACCTTTCTTGCTTTTGTCCTGAATCTTGCATTTGCATTAAGTGTTTTGGGTTTTCTGATAATGCATATTTCATTGGTGGCTGCAAATACCACAACCATTGAGGCATATGAAAAGAAAACCTCCTTTAAATGGCGCTATGACCTTGGTCGAAAAAAGAATTTTGAACAGGTGTTTGGGACAGACAAACGATATTGGTTCATGCCTGCTTACTCAGATGAAGATTTACGACGGATACCAGCGCTTCAGGGTCTCGAGTATCCGTCTAATCCTGAGTTTGACTCCCAAGAGTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000138 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005794 GO:0005795 GO:0005802 GO:0007275 GO:0007568 GO:0008150 GO:0010150 GO:0012505 GO:0016417 GO:0016740 GO:0016746 GO:0016747 GO:0019222 GO:0019707 GO:0031323 GO:0031410 GO:0031982 GO:0031984 GO:0031985 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051239 GO:0065007 GO:0090693 GO:0097708 GO:0098791 GO:0099402 GO:0140096 GO:1900055 GO:2000024 GO:2000026 GO:2000377

KEGG Pathways

Metabolic & Signaling

ko00100 ko01100 ko01110 map00100 map01100 map01110

Pfam Domains

Protein Families

DHHC

Protein Analysis

308

Amino Acids

34.84

Weight (kDa)

7.08

Isoelectric Point (pI)

37.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DHHC	PF01529	123 - 248	6.2e-38	DHHC palmitoyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014961)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60800
fragaria_vesca	FvH4_7g11740
malus_domestica	MD02G1205100.v1.1 MD07G1121600.v1.1
prunus_persica	Prupe.2G144500_v2.0.a1
pyrus_communis	pycom07g10370
rosa_chinensis	RchiOBHm_Chr1g0350251
rosa_laevigata	RLG00000028496
rosa_multiflora	Rmu_sc0001037.1_g000009
rosa_roxburghii	Rroxscaffold_4G00304950
rosa_rugosa	Rorug01G0210300 Rorug01G0210400
rosa_samantha	Rh1AG225400 Rh1BG193300
rosa_wichuraiana	Rw0G018800 Rw1G019380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	27
AciI	CCGC	2 cut(s)	159, 436
AclWI	GGATC	6 cut(s)	73, 248, 261, 364, 377, 462
AcsI	RAATTY	1 cut(s)	787
AcuI	CTGAAG	1 cut(s)	857
AfaI	GTAC	3 cut(s)	152, 377, 444
AfeI	AGCGCT	1 cut(s)	870
AfiI	CCNNNNNNNGG	2 cut(s)	27, 759
AflIII	ACRYGT	1 cut(s)	33
AgsI	TTSAA	2 cut(s)	40, 794
AjnI	CCWGG	2 cut(s)	84, 604
AjuI	GAANNNNNNNTTGG	2 cut(s)	786, 818
AleI	CACNNNNGTG	1 cut(s)	462
AluBI	AGCT	1 cut(s)	397
AluI	AGCT	1 cut(s)	397
Alw26I	GTCTC	2 cut(s)	533, 884
AlwI	GGATC	6 cut(s)	73, 248, 261, 364, 377, 462
Ama87I	CYCGRG	2 cut(s)	536, 881
Aor51HI	AGCGCT	1 cut(s)	870
AoxI	GGCC	4 cut(s)	139, 160, 281, 489
ApeKI	GCWGC	3 cut(s)	346, 565, 710
ApoI	RAATTY	1 cut(s)	787
Asp700I	GAANNNNTTC	1 cut(s)	35
AspLEI	GCGC	2 cut(s)	765, 871
AspS9I	GGNCC	2 cut(s)	140, 489
AsuC2I	CCSGG	2 cut(s)	143, 258
AsuHPI	GGTGA	4 cut(s)	100, 121, 226, 449
AvaI	CYCGRG	2 cut(s)	536, 881
BamHI	GGATCC	2 cut(s)	253, 369
BbvI	GCAGC	3 cut(s)	358, 552, 697
BccI	CCATC	2 cut(s)	149, 423
BceAI	ACGGC	2 cut(s)	154, 164
BciT130I	CCWGG	2 cut(s)	86, 606
BciVI	GTATCC	2 cut(s)	855, 897
BclI	TGATCA	1 cut(s)	192
BcnI	CCSGG	2 cut(s)	143, 258
BcoDI	GTCTC	2 cut(s)	533, 884
BfaI	CTAG	1 cut(s)	615
BfoI	RGCGCY	2 cut(s)	766, 872
BfuI	GTATCC	2 cut(s)	855, 897
BisI	GCNGC	4 cut(s)	160, 347, 566, 711
BlsI	GCNGC	4 cut(s)	161, 348, 567, 712
Bme1390I	CCNGG	4 cut(s)	86, 143, 258, 606
BmeT110I	CYCGRG	2 cut(s)	536, 881
BmgT120I	GGNCC	2 cut(s)	140, 489
BmiI	GGNNCC	3 cut(s)	255, 371, 490
BmrFI	CCNGG	4 cut(s)	86, 143, 258, 606
BmsI	GCATC	1 cut(s)	207
BoxI	GACNNNNGTC	1 cut(s)	774
BplI	GAGNNNNNCTC	1 cut(s)	893
BpuMI	CCSGG	2 cut(s)	143, 258
BsaI	GGTCTC	1 cut(s)	884
BsaJI	CCNNGG	3 cut(s)	21, 604, 772
BsaWI	WCCGGW	1 cut(s)	372
Bsc4I	CCNNNNNNNGG	2 cut(s)	27, 759
Bse3DI	GCAATG	3 cut(s)	174, 202, 418
BseBI	CCWGG	2 cut(s)	86, 606
BseDI	CCNNGG	3 cut(s)	21, 604, 772
BseLI	CCNNNNNNNGG	2 cut(s)	27, 759
BseMI	GCAATG	3 cut(s)	174, 202, 418
BseMII	CTCAG	4 cut(s)	356, 438, 855, 891
BseXI	GCAGC	3 cut(s)	358, 552, 697
BshFI	GGCC	4 cut(s)	141, 162, 283, 491
BsiHKCI	CYCGRG	2 cut(s)	536, 881
BsiSI	CCGG	4 cut(s)	143, 257, 373, 382
BslFI	GGGAC	1 cut(s)	820
BslI	CCNNNNNNNGG	2 cut(s)	27, 759
BsmAI	GTCTC	2 cut(s)	533, 884
BsmFI	GGGAC	1 cut(s)	820
BsnI	GGCC	4 cut(s)	141, 162, 283, 491
Bso31I	GGTCTC	1 cut(s)	884
BsoBI	CYCGRG	2 cut(s)	536, 881
Bsp143I	GATC	6 cut(s)	8, 78, 192, 253, 369, 454
Bsp19I	CCATGG	1 cut(s)	21
BspACI	CCGC	2 cut(s)	159, 436
BspANI	GGCC	4 cut(s)	141, 162, 283, 491
BspCNI	CTCAG	4 cut(s)	357, 437, 854, 892
BspHI	TCATGA	1 cut(s)	75
BspLI	GGNNCC	3 cut(s)	255, 371, 490
BspPI	GGATC	6 cut(s)	73, 248, 261, 364, 377, 462
BspTNI	GGTCTC	1 cut(s)	884
BsrDI	GCAATG	3 cut(s)	174, 202, 418
BssECI	CCNNGG	3 cut(s)	21, 604, 772
BssMI	GATC	6 cut(s)	8, 78, 192, 253, 369, 454
BssT1I	CCWWGG	2 cut(s)	21, 772
Bst2UI	CCWGG	2 cut(s)	86, 606
Bst4CI	ACNGT	1 cut(s)	121
Bst6I	CTCTTC	1 cut(s)	291
BstC8I	GCNNGC	3 cut(s)	285, 309, 834
BstDEI	CTNAG	4 cut(s)	365, 424, 841, 900
BstDSI	CCRYGG	1 cut(s)	21
BstH2I	RGCGCY	2 cut(s)	766, 872
BstHHI	GCGC	2 cut(s)	765, 871
BstKTI	GATC	6 cut(s)	11, 81, 195, 256, 372, 457
BstMAI	GTCTC	2 cut(s)	533, 884
BstMBI	GATC	6 cut(s)	8, 78, 192, 253, 369, 454
BstMWI	GCNNNNNNNGC	2 cut(s)	387, 420
BstNI	CCWGG	2 cut(s)	86, 606
BstPAI	GACNNNNGTC	1 cut(s)	774
BstSCI	CCNGG	4 cut(s)	84, 141, 256, 604
BstV1I	GCAGC	3 cut(s)	358, 552, 697
BstX2I	RGATCY	2 cut(s)	253, 369
BstXI	CCANNNNNNTGG	2 cut(s)	276, 324
BstYI	RGATCY	2 cut(s)	253, 369
BsuI	GTATCC	2 cut(s)	855, 897
BsuRI	GGCC	4 cut(s)	141, 162, 283, 491
BtgI	CCRYGG	1 cut(s)	21
BtsIMutI	CAGTG	1 cut(s)	117
Cac8I	GCNNGC	3 cut(s)	285, 309, 834
CciI	TCATGA	1 cut(s)	75
CfoI	GCGC	2 cut(s)	765, 871
Cfr13I	GGNCC	2 cut(s)	140, 489
Csp6I	GTAC	3 cut(s)	151, 376, 443
CspCI	CAANNNNNGTGG	2 cut(s)	709, 744
CviAII	CATG	3 cut(s)	22, 76, 829
CviQI	GTAC	3 cut(s)	151, 376, 443
DdeI	CTNAG	4 cut(s)	365, 424, 841, 900
DpnI	GATC	6 cut(s)	10, 80, 194, 255, 371, 456
DpnII	GATC	6 cut(s)	8, 78, 192, 253, 369, 454
DraI	TTTAAA	1 cut(s)	757
Eam1104I	CTCTTC	1 cut(s)	291
EarI	CTCTTC	1 cut(s)	291
Eco130I	CCWWGG	2 cut(s)	21, 772
Eco147I	AGGCCT	1 cut(s)	283
Eco31I	GGTCTC	1 cut(s)	884
Eco32I	GATATC	1 cut(s)	579
Eco47III	AGCGCT	1 cut(s)	870
Eco57I	CTGAAG	1 cut(s)	857
Eco88I	CYCGRG	2 cut(s)	536, 881
EcoO109I	RGGNCCY	1 cut(s)	489
EcoRII	CCWGG	2 cut(s)	84, 604
EcoRV	GATATC	1 cut(s)	579
EcoT14I	CCWWGG	2 cut(s)	21, 772
EcoT22I	ATGCAT	2 cut(s)	6, 696
ErhI	CCWWGG	2 cut(s)	21, 772
FaeI	CATG	3 cut(s)	25, 79, 832
FaqI	GGGAC	1 cut(s)	820
FatI	CATG	3 cut(s)	21, 75, 828
FauNDI	CATATG	1 cut(s)	736
FbaI	TGATCA	1 cut(s)	192
Fnu4HI	GCNGC	4 cut(s)	160, 347, 566, 711
Fsp4HI	GCNGC	4 cut(s)	160, 347, 566, 711
FspBI	CTAG	1 cut(s)	615
GlaI	GCGC	2 cut(s)	764, 870
GluI	GCNGC	4 cut(s)	160, 347, 566, 711
HaeII	RGCGCY	2 cut(s)	766, 872
HaeIII	GGCC	4 cut(s)	141, 162, 283, 491
HapII	CCGG	4 cut(s)	143, 257, 373, 382
HhaI	GCGC	2 cut(s)	765, 871
Hin1II	CATG	3 cut(s)	25, 79, 832
Hin6I	GCGC	2 cut(s)	763, 869
HinP1I	GCGC	2 cut(s)	763, 869
HinfI	GANTC	4 cut(s)	15, 167, 652, 908
HpaII	CCGG	4 cut(s)	143, 257, 373, 382
HphI	GGTGA	4 cut(s)	100, 121, 226, 449
Hpy166II	GTNNAC	1 cut(s)	443
Hpy188I	TCNGA	4 cut(s)	331, 366, 687, 844
Hpy188III	TCNNGA	7 cut(s)	12, 76, 536, 538, 649, 881, 899
Hpy8I	GTNNAC	1 cut(s)	443
Hpy99I	CGWCG	2 cut(s)	104, 861
HpyCH4III	ACNGT	1 cut(s)	121
HpyCH4IV	ACGT	1 cut(s)	33
HpyCH4V	TGCA	9 cut(s)	4, 48, 346, 390, 626, 659, 665, 694, 713
HpyF10VI	GCNNNNNNNGC	2 cut(s)	387, 420
HpyF3I	CTNAG	4 cut(s)	365, 424, 841, 900
HpySE526I	ACGT	1 cut(s)	33
Hsp92II	CATG	3 cut(s)	25, 79, 832
HspAI	GCGC	2 cut(s)	763, 869
Ksp22I	TGATCA	1 cut(s)	192
Kzo9I	GATC	6 cut(s)	8, 78, 192, 253, 369, 454
Lsp1109I	GCAGC	3 cut(s)	358, 552, 697
LweI	GCATC	1 cut(s)	207
MaeI	CTAG	1 cut(s)	615
MaeII	ACGT	1 cut(s)	33
MaeIII	GTNAC	2 cut(s)	106, 550
MalI	GATC	6 cut(s)	10, 80, 194, 255, 371, 456
MboI	GATC	6 cut(s)	8, 78, 192, 253, 369, 454
MboII	GAAGA	3 cut(s)	308, 503, 860
MflI	RGATCY	2 cut(s)	253, 369
MluCI	AATT	4 cut(s)	133, 274, 496, 787
MlyI	GAGTC	3 cut(s)	24, 161, 902
MmeI	TCCRAC	1 cut(s)	309
Mph1103I	ATGCAT	2 cut(s)	6, 696
MroXI	GAANNNNTTC	1 cut(s)	35
MseI	TTAA	5 cut(s)	336, 494, 588, 668, 756
MslI	CAYNNNNRTG	1 cut(s)	462
MspA1I	CMGCKG	1 cut(s)	397
MspI	CCGG	4 cut(s)	143, 257, 373, 382
MspR9I	CCNGG	4 cut(s)	86, 143, 258, 606
MvaI	CCWGG	2 cut(s)	86, 606
MwoI	GCNNNNNNNGC	2 cut(s)	387, 420
NciI	CCSGG	2 cut(s)	143, 258
NcoI	CCATGG	1 cut(s)	21
NdeI	CATATG	1 cut(s)	736
NdeII	GATC	6 cut(s)	8, 78, 192, 253, 369, 454
NlaIII	CATG	3 cut(s)	25, 79, 832
NlaIV	GGNNCC	3 cut(s)	255, 371, 490
NmuCI	GTSAC	1 cut(s)	106
NsiI	ATGCAT	2 cut(s)	6, 696
OliI	CACNNNNGTG	1 cut(s)	462
PaeR7I	CTCGAG	2 cut(s)	536, 881
PagI	TCATGA	1 cut(s)	75
PceI	AGGCCT	1 cut(s)	283
PdmI	GAANNNNTTC	1 cut(s)	35
PfeI	GAWTC	1 cut(s)	652
PflFI	GACNNNGTC	1 cut(s)	325
PflMI	CCANNNNNTGG	1 cut(s)	27
PkrI	GCNGC	4 cut(s)	161, 348, 567, 712
PleI	GAGTC	3 cut(s)	23, 161, 902
PpsI	GAGTC	3 cut(s)	23, 161, 902
PshAI	GACNNNNGTC	1 cut(s)	774
Psp6I	CCWGG	2 cut(s)	84, 604
PspGI	CCWGG	2 cut(s)	84, 604
PspN4I	GGNNCC	3 cut(s)	255, 371, 490
PspPI	GGNCC	2 cut(s)	140, 489
PsrI	GAACNNNNNNTAC	2 cut(s)	459, 491
PsuI	RGATCY	2 cut(s)	253, 369
PsyI	GACNNNGTC	1 cut(s)	325
PvuII	CAGCTG	1 cut(s)	397
RsaI	GTAC	3 cut(s)	152, 377, 444
RsaNI	GTAC	3 cut(s)	151, 376, 443
RseI	CAYNNNNRTG	1 cut(s)	462
SaqAI	TTAA	5 cut(s)	336, 494, 588, 668, 756
SatI	GCNGC	4 cut(s)	160, 347, 566, 711
Sau3AI	GATC	6 cut(s)	8, 78, 192, 253, 369, 454
Sau96I	GGNCC	2 cut(s)	140, 489
SchI	GAGTC	3 cut(s)	24, 161, 902
ScrFI	CCNGG	4 cut(s)	86, 143, 258, 606
SfaNI	GCATC	1 cut(s)	207
Sfr274I	CTCGAG	2 cut(s)	536, 881
SlaI	CTCGAG	2 cut(s)	536, 881
SmiMI	CAYNNNNRTG	1 cut(s)	462
SmlI	CTYRAG	2 cut(s)	536, 881
SmoI	CTYRAG	2 cut(s)	536, 881
Sse9I	AATT	4 cut(s)	133, 274, 496, 787
SseBI	AGGCCT	1 cut(s)	283
SsiI	CCGC	2 cut(s)	159, 436
SspMI	CTAG	1 cut(s)	615
StuI	AGGCCT	1 cut(s)	283
StyD4I	CCNGG	4 cut(s)	84, 141, 256, 604
StyI	CCWWGG	2 cut(s)	21, 772
TaaI	ACNGT	1 cut(s)	121
TaiI	ACGT	1 cut(s)	36
TaqI	TCGA	3 cut(s)	537, 778, 882
TaqII	GACCGA	1 cut(s)	61
TasI	AATT	4 cut(s)	133, 274, 496, 787
TatI	WGTACW	1 cut(s)	442
TauI	GCSGC	1 cut(s)	162
TfiI	GAWTC	1 cut(s)	652
Tru1I	TTAA	5 cut(s)	336, 494, 588, 668, 756
Tru9I	TTAA	5 cut(s)	336, 494, 588, 668, 756
TscAI	CASTG	1 cut(s)	124
TseFI	GTSAC	1 cut(s)	106
TseI	GCWGC	3 cut(s)	346, 565, 710
Tsp45I	GTSAC	1 cut(s)	106
TspDTI	ATGAA	7 cut(s)	191, 309, 467, 690, 753, 817, 861
TspGWI	ACGGA	3 cut(s)	266, 874, 879
TspRI	CASTG	1 cut(s)	124
Tth111I	GACNNNGTC	1 cut(s)	325
Van91I	CCANNNNNTGG	1 cut(s)	27
XapI	RAATTY	1 cut(s)	787
XhoI	CTCGAG	2 cut(s)	536, 881
XmnI	GAANNNNTTC	1 cut(s)	35
XspI	CTAG	1 cut(s)	615
Zsp2I	ATGCAT	2 cut(s)	6, 696

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.