AT3G61510

Aminotransferase class I and II

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0011827
Physical Location & Seq
Reverse (-)
22763495 .. 22766010
2516 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G61510.1

Sequence Viewer

Length: 1467 bp
ATGTCTCAGGGTGCATGTGAGAATCAACTTCTATCCAAATTAGCTTTGAGTGACAAACATGGAGAAGCTTCGCCGTACTTCCATGGCTGGAAAGCTTACGACAATAATCCTTTTCATCCAACTCATAATCCACAAGGAGTTATTCAAATGGGTCTCGCCGAAAATCAACTTTGTTCAGATTTGATCAAAGAATGGATAAAGGAAAATCCACAGGCATCTATTTGTACGGCGGAGGGAATTGACTCTTTCTCCGACATTGCTGTTTTTCAAGATTATCACGGTCTCAAACAATTTAGACAGGCGATTGCGACGTTTATGGAGAGAGCGAGAGGCGGGCGGGTGAGGTTTGAGGCGGAGAGGGTGGTGATGAGCGGAGGAGCCACCGGAGCAAATGAGACGATCATGTTCTGTCTTGCTGATCCCGGCGACGCTTTTCTCGTCCCTACTCCTTATTATGCTGCATTCGATAGAGACTTAAGGTGGAGAACTGGAGTTAGAATAATCCCTGTGGAGTGTAGCAGCTCAAACAATTTCCAGATTACAAAACAAGCCCTAGAATCAGCGTACCTTAAGGCCCAAGAAACCGGTATCAAGATCAAAGGCCTGATCATCTCAAACCCTCTTGGAACATCTCTCGATCGAGAAACTCTTGAAAGCCTTGTCAGCTTCATCAACGACAAGCAAATTCACTTAGTATGCGACGAAATATACGCAGCAACGGTTTTTGCGGAACCGGGATTCATCAGTGTTGCAGAGATCATCCAAGAGATGTATTATGTTAACCGTGATCTGATTCATATCGTCTACAGTCTTTCAAAGGACATGGGTCTTCCCGGTTTCCGGGTTGGAGTGGTTTACTCTTACAACGATGTTGTTGTGTCCTGCGCAAGGAGGATGTCGAGTTTTGGATTGGTCTCGTCGCAGACACAAAGTTTTCTAGCTGCTATGTTGTCTGATCAGAGTTTTGTCGATAACTTTCTTGTTGAGGTTTCGAAAAGAGTAGCGAAGAGACACCATATGTTCACGGAAGGGCTTGAAGAGATGGGGATTTCTTGCTTGAGAAGCAACGCGGGTTTATTCGTTTTGATGGATTTGAGGCATATGCTTAAGGATCAGACATTTGATTCCGAAATGGCGCTTTGGCGAGTTATTATCAATAAGGTCAAGATTAATGTCTCTCCTGGCTCGTCGTTTCACTGCTCTGAGCCTGGTTGGTTCCGAGTCTGCTTTGCTAATATGGACGAAGACACACTCCAAATTGCACTTGAACGAATCAAAGACTTTGTGGTTGGAGACAGAGCCAACAAGAACAAGAACTGTAACTGCATTTGCAACAACAAAAGGGAGAACAAGAAACGTAAGAGTTTTCAAAAGAATCTCAAGCTGAGTTTATCTTCGATGAGGTACGAGGAACATGTTAGGTCACCAAAGTTGATGTCTCCTCATTCACCATTGCTTCGAGCTTAA

Protein Analysis

488

Amino Acids

55.0

Weight (kDa)

7.18

Isoelectric Point (pI)

48.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aminotran_1_2 PF00155 48 - 425 6.7e-105 Aminotransferase class I and II
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011827)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G01480 AT1G01480 AT3G61510
fragaria_vesca FvH4_7g15310
malus_domestica MD00G1167500.v1.1 MD01G1070400.v1.1
prunus_persica Prupe.2G176900_v2.0.a1
pyrus_communis pycom01g09960 pycom07g12870
rosa_chinensis RchiOBHm_Chr1g0357641
rosa_laevigata RLG00000028012
rosa_multiflora Rmu_sc0004683.1_g000005
rosa_roxburghii Rroxscaffold_4G00298680
rosa_rugosa Rorug01G0257300
rosa_samantha Rh1AG271300 Rh1BG238200 Rh1CG255100 Rh1DG266500
rosa_wichuraiana Rw1G024180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 886
AccBSI CCGCTC 1 cut(s) 372
AccI GTMKAC 1 cut(s) 804
AccII CGCG 1 cut(s) 1070
AciI CCGC 7 cut(s) 230, 333, 337, 353, 372, 728, 1070
AclWI GGATC 2 cut(s) 413, 1119
AcsI RAATTY 1 cut(s) 684
AfaI GTAC 4 cut(s) 77, 226, 566, 1406
AfiI CCNNNNNNNGG 2 cut(s) 840, 888
AflII CTTAAG 3 cut(s) 475, 569, 1106
AflIII ACRYGT 1 cut(s) 1414
AgeI ACCGGT 1 cut(s) 584
AgsI TTSAA 7 cut(s) 146, 269, 653, 816, 1037, 1268, 1370
AjnI CCWGG 2 cut(s) 1180, 1207
AluBI AGCT 8 cut(s) 44, 68, 95, 522, 666, 941, 1384, 1463
AluI AGCT 8 cut(s) 44, 68, 95, 522, 666, 941, 1384, 1463
AlwI GGATC 2 cut(s) 413, 1119
AoxI GGCC 2 cut(s) 573, 601
ApeKI GCWGC 4 cut(s) 458, 519, 713, 941
ApoI RAATTY 1 cut(s) 684
ArsI GACNNNNNNTTYG 2 cut(s) 1421, 1453
AseI ATTAAT 1 cut(s) 1170
AsiGI ACCGGT 1 cut(s) 584
AspLEI GCGC 2 cut(s) 887, 1138
AspS9I GGNCC 1 cut(s) 574
AsuC2I CCSGG 4 cut(s) 423, 735, 834, 842
AsuHPI GGTGA 4 cut(s) 352, 376, 1416, 1440
AsuII TTCGAA 1 cut(s) 992
BbsI GAAGAC 2 cut(s) 821, 1251
BbvI GCAGC 4 cut(s) 445, 531, 725, 928
BccI CCATC 2 cut(s) 1036, 1081
BceAI ACGGC 2 cut(s) 58, 243
BciT130I CCWGG 2 cut(s) 1182, 1209
BclI TGATCA 3 cut(s) 183, 606, 955
BcnI CCSGG 4 cut(s) 423, 735, 834, 842
BfaI CTAG 2 cut(s) 554, 938
BfmI CTRYAG 1 cut(s) 805
BfoI RGCGCY 1 cut(s) 1139
BfrI CTTAAG 3 cut(s) 475, 569, 1106
BisI GCNGC 4 cut(s) 459, 520, 714, 942
BlsI GCNGC 4 cut(s) 460, 521, 715, 943
Bme1390I CCNGG 6 cut(s) 423, 735, 834, 842, 1182, 1209
BmgT120I GGNCC 1 cut(s) 574
BmiI GGNNCC 3 cut(s) 379, 732, 1217
BmrFI CCNGG 6 cut(s) 423, 735, 834, 842, 1182, 1209
BmsI GCATC 1 cut(s) 224
BoxI GACNNNNGTC 1 cut(s) 825
BpiI GAAGAC 2 cut(s) 821, 1251
BpmI CTGGAG 1 cut(s) 510
Bpu14I TTCGAA 1 cut(s) 992
BpuEI CTTGAG 2 cut(s) 1078, 1364
BpuMI CCSGG 4 cut(s) 423, 735, 834, 842
BsaBI GATNNNNATC 1 cut(s) 797
BsaI GGTCTC 3 cut(s) 158, 287, 919
BsaJI CCNNGG 1 cut(s) 82
BsaWI WCCGGW 2 cut(s) 383, 584
BsaXI ACNNNNNCTCC 2 cut(s) 233, 263
Bsc4I CCNNNNNNNGG 2 cut(s) 840, 888
Bse118I RCCGGY 1 cut(s) 584
Bse1I ACTGG 1 cut(s) 493
Bse3DI GCAATG 2 cut(s) 255, 1451
Bse8I GATNNNNATC 1 cut(s) 797
BseBI CCWGG 2 cut(s) 1182, 1209
BseDI CCNNGG 1 cut(s) 82
BseGI GGATG 3 cut(s) 115, 759, 900
BseJI GATNNNNATC 1 cut(s) 797
BseLI CCNNNNNNNGG 2 cut(s) 840, 888
BseMI GCAATG 2 cut(s) 255, 1451
BseMII CTCAG 3 cut(s) 20, 1194, 1376
BseNI ACTGG 1 cut(s) 493
BseRI GAGGAG 2 cut(s) 390, 1431
BseXI GCAGC 4 cut(s) 445, 531, 725, 928
Bsh1236I CGCG 1 cut(s) 1070
Bsh1285I CGRYCG 1 cut(s) 640
BshFI GGCC 2 cut(s) 575, 603
BshTI ACCGGT 1 cut(s) 584
BsiEI CGRYCG 1 cut(s) 640
BsiSI CCGG 6 cut(s) 384, 423, 585, 734, 834, 841
BslFI GGGAC 1 cut(s) 425
BslI CCNNNNNNNGG 2 cut(s) 840, 888
BsmBI CGTCTC 1 cut(s) 389
BsmFI GGGAC 1 cut(s) 425
BsmI GAATGC 1 cut(s) 461
BsnI GGCC 2 cut(s) 575, 603
Bso31I GGTCTC 3 cut(s) 158, 287, 919
Bsp119I TTCGAA 1 cut(s) 992
Bsp19I CCATGG 1 cut(s) 82
BspACI CCGC 7 cut(s) 230, 333, 337, 353, 372, 728, 1070
BspANI GGCC 2 cut(s) 575, 603
BspCNI CTCAG 3 cut(s) 19, 1195, 1377
BspFNI CGCG 1 cut(s) 1070
BspLI GGNNCC 3 cut(s) 379, 732, 1217
BspPI GGATC 2 cut(s) 413, 1119
BspT104I TTCGAA 1 cut(s) 992
BspTI CTTAAG 3 cut(s) 475, 569, 1106
BspTNI GGTCTC 3 cut(s) 158, 287, 919
BsrBI CCGCTC 1 cut(s) 372
BsrDI GCAATG 2 cut(s) 255, 1451
BsrFI RCCGGY 1 cut(s) 584
BsrI ACTGG 1 cut(s) 493
BssAI RCCGGY 1 cut(s) 584
BssECI CCNNGG 1 cut(s) 82
BssT1I CCWWGG 1 cut(s) 82
Bst2UI CCWGG 2 cut(s) 1182, 1209
Bst4CI ACNGT 5 cut(s) 281, 721, 785, 809, 1319
Bst6I CTCTTC 2 cut(s) 1001, 1032
BstAFI CTTAAG 3 cut(s) 475, 569, 1106
BstBI TTCGAA 1 cut(s) 992
BstC8I GCNNGC 1 cut(s) 335
BstDEI CTNAG 4 cut(s) 6, 691, 1203, 1385
BstDSI CCRYGG 1 cut(s) 82
BstEII GGTNACC 1 cut(s) 1422
BstENI CCTNNNNNAGG 1 cut(s) 886
BstF5I GGATG 3 cut(s) 115, 759, 900
BstFNI CGCG 1 cut(s) 1070
BstH2I RGCGCY 1 cut(s) 1139
BstHHI GCGC 2 cut(s) 887, 1138
BstMCI CGRYCG 1 cut(s) 640
BstMWI GCNNNNNNNGC 3 cut(s) 386, 663, 1062
BstNI CCWGG 2 cut(s) 1182, 1209
BstNSI RCATGY 2 cut(s) 18, 1418
BstPAI GACNNNNGTC 1 cut(s) 825
BstPI GGTNACC 1 cut(s) 1422
BstSCI CCNGG 6 cut(s) 421, 733, 832, 840, 1180, 1207
BstSFI CTRYAG 1 cut(s) 805
BstUI CGCG 1 cut(s) 1070
BstV1I GCAGC 4 cut(s) 445, 531, 725, 928
BstV2I GAAGAC 2 cut(s) 821, 1251
BsuRI GGCC 2 cut(s) 575, 603
BtgI CCRYGG 1 cut(s) 82
BtsCI GGATG 3 cut(s) 115, 759, 900
BtsI GCAGTG 1 cut(s) 1195
BtsIMutI CAGTG 2 cut(s) 751, 1195
Cac8I GCNNGC 1 cut(s) 335
CfoI GCGC 2 cut(s) 887, 1138
Cfr10I RCCGGY 1 cut(s) 584
Cfr13I GGNCC 1 cut(s) 574
CseI GACGC 1 cut(s) 437
Csp6I GTAC 4 cut(s) 76, 225, 565, 1405
CspAI ACCGGT 1 cut(s) 584
CviAII CATG 6 cut(s) 15, 59, 83, 403, 823, 1415
CviQI GTAC 4 cut(s) 76, 225, 565, 1405
DdeI CTNAG 4 cut(s) 6, 691, 1203, 1385
Eam1104I CTCTTC 2 cut(s) 1001, 1032
EarI CTCTTC 2 cut(s) 1001, 1032
EciI GGCGGA 2 cut(s) 245, 368
Eco130I CCWWGG 1 cut(s) 82
Eco147I AGGCCT 1 cut(s) 603
Eco31I GGTCTC 3 cut(s) 158, 287, 919
Eco91I GGTNACC 1 cut(s) 1422
EcoNI CCTNNNNNAGG 1 cut(s) 886
EcoO65I GGTNACC 1 cut(s) 1422
EcoRII CCWGG 2 cut(s) 1180, 1207
EcoT14I CCWWGG 1 cut(s) 82
ErhI CCWWGG 1 cut(s) 82
Esp3I CGTCTC 1 cut(s) 389
FaeI CATG 6 cut(s) 18, 62, 86, 406, 826, 1418
FaqI GGGAC 1 cut(s) 425
FatI CATG 6 cut(s) 14, 58, 82, 402, 822, 1414
FauI CCCGC 3 cut(s) 326, 330, 1063
FauNDI CATATG 2 cut(s) 1017, 1101
FbaI TGATCA 3 cut(s) 183, 606, 955
FblI GTMKAC 1 cut(s) 804
Fnu4HI GCNGC 4 cut(s) 459, 520, 714, 942
FokI GGATG 3 cut(s) 102, 746, 907
Fsp4HI GCNGC 4 cut(s) 459, 520, 714, 942
FspBI CTAG 2 cut(s) 554, 938
FspI TGCGCA 1 cut(s) 886
GlaI GCGC 2 cut(s) 886, 1137
GluI GCNGC 4 cut(s) 459, 520, 714, 942
GsuI CTGGAG 1 cut(s) 510
HaeII RGCGCY 1 cut(s) 1139
HaeIII GGCC 2 cut(s) 575, 603
HapII CCGG 6 cut(s) 384, 423, 585, 734, 834, 841
HgaI GACGC 1 cut(s) 437
HhaI GCGC 2 cut(s) 887, 1138
Hin1II CATG 6 cut(s) 18, 62, 86, 406, 826, 1418
Hin6I GCGC 2 cut(s) 885, 1136
HinP1I GCGC 2 cut(s) 885, 1136
HincII GTYRAC 1 cut(s) 781
HindII GTYRAC 1 cut(s) 781
HindIII AAGCTT 2 cut(s) 66, 93
HinfI GANTC 9 cut(s) 22, 242, 557, 738, 793, 1124, 1221, 1272, 1375
HpaI GTTAAC 1 cut(s) 781
HpaII CCGG 6 cut(s) 384, 423, 585, 734, 834, 841
HphI GGTGA 4 cut(s) 352, 376, 1416, 1440
Hpy166II GTNNAC 4 cut(s) 781, 805, 856, 1023
Hpy188I TCNGA 9 cut(s) 178, 253, 792, 955, 960, 1116, 1129, 1204, 1220
Hpy188III TCNNGA 7 cut(s) 269, 535, 592, 635, 641, 650, 1165
Hpy8I GTNNAC 4 cut(s) 781, 805, 856, 1023
Hpy99I CGWCG 5 cut(s) 313, 431, 704, 922, 1192
HpyAV CCTTC 1 cut(s) 1022
HpyCH4III ACNGT 5 cut(s) 281, 721, 785, 809, 1319
HpyCH4IV ACGT 2 cut(s) 311, 1357
HpyCH4V TGCA 6 cut(s) 14, 461, 752, 1262, 1326, 1332
HpyF10VI GCNNNNNNNGC 3 cut(s) 386, 663, 1062
HpyF3I CTNAG 4 cut(s) 6, 691, 1203, 1385
HpySE526I ACGT 2 cut(s) 311, 1357
Hsp92II CATG 6 cut(s) 18, 62, 86, 406, 826, 1418
HspAI GCGC 2 cut(s) 885, 1136
Ksp22I TGATCA 3 cut(s) 183, 606, 955
KspAI GTTAAC 1 cut(s) 781
LmnI GCTCC 2 cut(s) 377, 386
Lsp1109I GCAGC 4 cut(s) 445, 531, 725, 928
LweI GCATC 1 cut(s) 224
MaeI CTAG 2 cut(s) 554, 938
MaeII ACGT 2 cut(s) 311, 1357
MaeIII GTNAC 3 cut(s) 50, 1319, 1422
MbiI CCGCTC 1 cut(s) 372
MboII GAAGA 5 cut(s) 821, 1018, 1049, 1256, 1386
MluCI AATT 6 cut(s) 38, 237, 290, 529, 684, 1257
MlyI GAGTC 2 cut(s) 236, 1230
MmeI TCCRAC 4 cut(s) 143, 276, 826, 1270
MseI TTAA 6 cut(s) 476, 570, 780, 1107, 1170, 1465
MspCI CTTAAG 3 cut(s) 475, 569, 1106
MspI CCGG 6 cut(s) 384, 423, 585, 734, 834, 841
MspR9I CCNGG 6 cut(s) 423, 735, 834, 842, 1182, 1209
Mva1269I GAATGC 1 cut(s) 461
MvaI CCWGG 2 cut(s) 1182, 1209
MvnI CGCG 1 cut(s) 1070
MwoI GCNNNNNNNGC 3 cut(s) 386, 663, 1062
NciI CCSGG 4 cut(s) 423, 735, 834, 842
NcoI CCATGG 1 cut(s) 82
NdeI CATATG 2 cut(s) 1017, 1101
NlaIII CATG 6 cut(s) 18, 62, 86, 406, 826, 1418
NlaIV GGNNCC 3 cut(s) 379, 732, 1217
NmuCI GTSAC 2 cut(s) 50, 1422
NsbI TGCGCA 1 cut(s) 886
NspI RCATGY 2 cut(s) 18, 1418
NspV TTCGAA 1 cut(s) 992
PceI AGGCCT 1 cut(s) 603
PciI ACATGT 1 cut(s) 1414
PcsI WCGNNNNNNNCGW 1 cut(s) 435
PctI GAATGC 1 cut(s) 461
PfeI GAWTC 7 cut(s) 22, 557, 738, 793, 1124, 1272, 1375
PinAI ACCGGT 1 cut(s) 584
PkrI GCNGC 4 cut(s) 460, 521, 715, 943
Ple19I CGATCG 1 cut(s) 640
PleI GAGTC 2 cut(s) 236, 1229
PpsI GAGTC 2 cut(s) 236, 1229
PscI ACATGT 1 cut(s) 1414
PshAI GACNNNNGTC 1 cut(s) 825
PshBI ATTAAT 1 cut(s) 1170
Psp6I CCWGG 2 cut(s) 1180, 1207
PspEI GGTNACC 1 cut(s) 1422
PspGI CCWGG 2 cut(s) 1180, 1207
PspN4I GGNNCC 3 cut(s) 379, 732, 1217
PspPI GGNCC 1 cut(s) 574
PvuI CGATCG 1 cut(s) 640
RsaI GTAC 4 cut(s) 77, 226, 566, 1406
RsaNI GTAC 4 cut(s) 76, 225, 565, 1405
SaqAI TTAA 6 cut(s) 476, 570, 780, 1107, 1170, 1465
SatI GCNGC 4 cut(s) 459, 520, 714, 942
Sau96I GGNCC 1 cut(s) 574
SchI GAGTC 2 cut(s) 236, 1230
ScrFI CCNGG 6 cut(s) 423, 735, 834, 842, 1182, 1209
SfaNI GCATC 1 cut(s) 224
SfcI CTRYAG 1 cut(s) 805
SfuI TTCGAA 1 cut(s) 992
SmlI CTYRAG 5 cut(s) 475, 569, 1057, 1106, 1379
SmoI CTYRAG 5 cut(s) 475, 569, 1057, 1106, 1379
Sse9I AATT 6 cut(s) 38, 237, 290, 529, 684, 1257
SseBI AGGCCT 1 cut(s) 603
SsiI CCGC 7 cut(s) 230, 333, 337, 353, 372, 728, 1070
SspMI CTAG 2 cut(s) 554, 938
StuI AGGCCT 1 cut(s) 603
StyD4I CCNGG 6 cut(s) 421, 733, 832, 840, 1180, 1207
StyI CCWWGG 1 cut(s) 82
TaaI ACNGT 5 cut(s) 281, 721, 785, 809, 1319
TaiI ACGT 2 cut(s) 314, 1360
TaqI TCGA 8 cut(s) 465, 636, 640, 899, 969, 992, 1397, 1459
TasI AATT 6 cut(s) 38, 237, 290, 529, 684, 1257
TfiI GAWTC 7 cut(s) 22, 557, 738, 793, 1124, 1272, 1375
Tru1I TTAA 6 cut(s) 476, 570, 780, 1107, 1170, 1465
Tru9I TTAA 6 cut(s) 476, 570, 780, 1107, 1170, 1465
TscAI CASTG 2 cut(s) 751, 1202
TseFI GTSAC 2 cut(s) 50, 1422
TseI GCWGC 4 cut(s) 458, 519, 713, 941
Tsp45I GTSAC 2 cut(s) 50, 1422
TspDTI ATGAA 4 cut(s) 104, 658, 730, 785
TspGWI ACGGA 1 cut(s) 1040
TspRI CASTG 2 cut(s) 751, 1202
Vha464I CTTAAG 3 cut(s) 475, 569, 1106
VspI ATTAAT 1 cut(s) 1170
XagI CCTNNNNNAGG 1 cut(s) 886
XapI RAATTY 1 cut(s) 684
XceI RCATGY 2 cut(s) 18, 1418
XmiI GTMKAC 1 cut(s) 804
XspI CTAG 2 cut(s) 554, 938
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.