FvH4_7g15310

1-aminocyclopropane-1-carboxylate synthase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
Physical Location & Seq
Reverse (-)
13335903 .. 13338972
3070 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g15310.t1

Sequence Viewer

Length: 1482 bp
ATGGCCTCAAACTCACTCTTGTCAAAGATTGCAACCAATGATGGACACGGCGAGAACTTGGCTTACTTCGATGGATGGAAGGCCTACGACAGGAACCCATTTCACCCGACTCAGAACCCCGAGGGTGTTATTCAGATGGGTCTTGCAGAAAACCAGCTTTCTTTCGACGTGATTCAAGAGTGGATTATGAAGAATCCCAAGGCCTCCATTTGCACTCCCGAAGGACTTGCCGAGTTCAAAAATGTGGCCAACTTTCAAGACTATCATGGCTTTCCAGACTTCAGAAAGGCTATAGCTAACTTCATGTCAAAGGCGAGAGGAGGCAGAGTCAAATTTGATCCTGATCGTGTAGTCATGGCTGGCGGAGCCACCGGAGCTAATGAGACGGTCATGTTTTGCTTGGCTAACCCAGGAGATGCTTTCCTAGTTCCCTCTCCTTACTATCCAGCATTCTACCGAGACTTGGGGTGGCGAACGGGAGTGAAAATTGTTCCGGTCGATTGTGATAGCTCAAACAATTTCCAAGTAACCAGAGCAGCACTTGAAGCAGCCTACGAAAAGGCCCGAAACAACAACATCAACATAAAGGGCTTGATCATAACAAACCCTTCAAACCCATTGGGGACAACCCTGGACAGAGCCACACTCACTAGCTTGGTGAAATTCATCAATGACAAGAACATCCACTTGGTCTGCGACGAAATCTACGCAGGCACAGTGTTCAGCTCCCCAAAATTCACCTGCGTTACAGAGGTCATGAAAGAGGTGAAGAACTGCAACCGCGATTTGATCCACATTGTGTATAGCTTGTCCAAGGACATGGGAGTCCCTGGCCTAAGGGTCGGAATCGTTTACTCGTACAATGACACCGTCGTGAAGTGCGCTCGTAAGATGTCGAGCTTCGGGTTGGTCTCCTCCCAAACTCAACACATGCTCGCCGCCATGCTTCTCGACGATGAATTTGTCACCAACTTCCTCGAGACCAGCTCTAAGAGGCTGGCGAGGAGGCATTGGATTTTCACCACGGGGCTCGAAAAGGTGGGAATCAATTGCTTGAAAGGAAATGCCGGGCTGTTTTGCTGGATGGACTTGAGGAAGCTGCTTAAAGATAAAACATTCGAGGCGGAAATGGTGCTGTGGCGTATGATTATCAACGATGTGAAGCTCAACGTTTCGCCGGGATCTTCTTTCCGGTGCGTGGAGCCTGGTTGGTTTAGGGTTTGCTTTGCAAACATGGATGAACATACGGTTGAAGTTGCATTGAAGAGGATTCGAGCATTCGTGGGAGTAGAATTCGAAGGAAACAAGAAGAGGAATAATGCAGAAGTGTTTGTGAACAGTCCTAGGAAGAATCGTTGGGGAAAAGATGGTCTGAGGCTTAGCTTTGGATCAGCAACAAGAAGATATGAAGAGGTCATGTCCCCGCGTATGATGTCTCCTCATTCACCAATGCCTCACTCGCCTCTACTTCGAGCAAGTTAA

Protein Analysis

494

Amino Acids

55.36

Weight (kDa)

9.04

Isoelectric Point (pI)

38.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aminotran_1_2 PF00155 44 - 424 2.8e-107 Aminotransferase class I and II
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011827)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 749
AasI GACNNNNNNGTC 1 cut(s) 824
Acc36I ACCTGC 1 cut(s) 749
AccII CGCG 2 cut(s) 783, 1426
AciI CCGC 5 cut(s) 363, 781, 939, 1124, 1424
AclI AACGTT 1 cut(s) 1170
AclWI GGATC 4 cut(s) 332, 784, 1189, 1396
AcoI YGGCCR 1 cut(s) 246
AcsI RAATTY 5 cut(s) 332, 662, 734, 959, 1292
AcuI CTGAAG 1 cut(s) 265
AdeI CACNNNGTG 1 cut(s) 799
AfaI GTAC 1 cut(s) 860
AfiI CCNNNNNNNGG 3 cut(s) 90, 463, 1198
AgsI TTSAA 8 cut(s) 176, 238, 257, 545, 612, 1057, 1253, 1264
AjiI CACGTC 1 cut(s) 169
AjnI CCWGG 4 cut(s) 409, 630, 829, 1204
AjuI GAANNNNNNNTTGG 2 cut(s) 671, 703
AleI CACNNNNGTG 1 cut(s) 872
Alw26I GTCTC 5 cut(s) 377, 453, 916, 974, 1440
AlwI GGATC 4 cut(s) 332, 784, 1189, 1396
Ama87I CYCGRG 2 cut(s) 119, 977
AoxI GGCC 6 cut(s) 3, 81, 201, 246, 561, 832
ApeKI GCWGC 3 cut(s) 536, 548, 1099
ApoI RAATTY 5 cut(s) 332, 662, 734, 959, 1292
ArsI GACNNNNNNTTYG 2 cut(s) 944, 976
AspA2I CCTAGG 1 cut(s) 1343
AspLEI GCGC 1 cut(s) 884
AspS9I GGNCC 1 cut(s) 562
AsuC2I CCSGG 2 cut(s) 1069, 1179
AsuHPI GGTGA 7 cut(s) 95, 670, 730, 778, 958, 1012, 1437
AsuII TTCGAA 1 cut(s) 1296
AvaI CYCGRG 2 cut(s) 119, 977
AvrII CCTAGG 1 cut(s) 1343
AxyI CCTNAGG 1 cut(s) 836
BalI TGGCCA 1 cut(s) 248
BanII GRGCYC 1 cut(s) 1032
BbvI GCAGC 3 cut(s) 548, 560, 1086
BccI CCATC 6 cut(s) 35, 65, 69, 130, 1078, 1361
BceAI ACGGC 1 cut(s) 64
BcgI CGANNNNNNTGC 2 cut(s) 209, 243
BciT130I CCWGG 4 cut(s) 411, 632, 831, 1206
BclI TGATCA 1 cut(s) 594
BcnI CCSGG 2 cut(s) 1069, 1179
BcoDI GTCTC 5 cut(s) 377, 453, 916, 974, 1440
BfaI CTAG 3 cut(s) 425, 651, 1344
BfmI CTRYAG 1 cut(s) 291
BfuAI ACCTGC 1 cut(s) 749
BisI GCNGC 4 cut(s) 537, 549, 939, 1100
BlnI CCTAGG 1 cut(s) 1343
BlpI GCTNAGC 1 cut(s) 1379
BlsI GCNGC 4 cut(s) 538, 550, 940, 1101
Bme1390I CCNGG 6 cut(s) 411, 632, 831, 1069, 1179, 1206
BmeT110I CYCGRG 2 cut(s) 119, 977
BmgBI CACGTC 1 cut(s) 169
BmgT120I GGNCC 1 cut(s) 562
BmiI GGNNCC 3 cut(s) 95, 367, 1203
BmrFI CCNGG 6 cut(s) 411, 632, 831, 1069, 1179, 1206
BmsI GCATC 1 cut(s) 406
BplI GAGNNNNNCTC 4 cut(s) 630, 662, 971, 1003
Bpu1102I GCTNAGC 1 cut(s) 1379
Bpu14I TTCGAA 1 cut(s) 1296
BpuEI CTTGAG 1 cut(s) 1111
BpuMI CCSGG 2 cut(s) 1069, 1179
BsaBI GATNNNNATC 1 cut(s) 342
BsaI GGTCTC 2 cut(s) 916, 974
BsaJI CCNNGG 8 cut(s) 120, 198, 409, 630, 813, 829, 1023, 1343
BsaWI WCCGGW 3 cut(s) 371, 493, 1191
BsaXI ACNNNNNCTCC 2 cut(s) 312, 342
Bsc4I CCNNNNNNNGG 3 cut(s) 90, 463, 1198
Bse21I CCTNAGG 1 cut(s) 836
Bse8I GATNNNNATC 1 cut(s) 342
BseBI CCWGG 4 cut(s) 411, 632, 831, 1206
BseDI CCNNGG 8 cut(s) 120, 198, 409, 630, 813, 829, 1023, 1343
BseGI GGATG 4 cut(s) 80, 681, 1089, 1243
BseJI GATNNNNATC 1 cut(s) 342
BseLI CCNNNNNNNGG 3 cut(s) 90, 463, 1198
BseMII CTCAG 2 cut(s) 125, 1364
BseRI GAGGAG 4 cut(s) 333, 904, 1018, 1428
BseXI GCAGC 3 cut(s) 548, 560, 1086
Bsh1236I CGCG 2 cut(s) 783, 1426
Bsh1285I CGRYCG 1 cut(s) 498
BshFI GGCC 6 cut(s) 5, 83, 203, 248, 563, 834
BsiEI CGRYCG 1 cut(s) 498
BsiHKCI CYCGRG 2 cut(s) 119, 977
BsiSI CCGG 5 cut(s) 372, 494, 1068, 1178, 1192
BslFI GGGAC 3 cut(s) 637, 812, 1405
BslI CCNNNNNNNGG 3 cut(s) 90, 463, 1198
BsmAI GTCTC 5 cut(s) 377, 453, 916, 974, 1440
BsmBI CGTCTC 1 cut(s) 377
BsmFI GGGAC 3 cut(s) 637, 812, 1405
BsmI GAATGC 2 cut(s) 449, 1277
BsnI GGCC 6 cut(s) 5, 83, 203, 248, 563, 834
Bso31I GGTCTC 2 cut(s) 916, 974
BsoBI CYCGRG 2 cut(s) 119, 977
Bsp119I TTCGAA 1 cut(s) 1296
Bsp1286I GDGCHC 1 cut(s) 1032
Bsp143I GATC 6 cut(s) 337, 343, 594, 789, 1181, 1388
Bsp1720I GCTNAGC 1 cut(s) 1379
BspACI CCGC 5 cut(s) 363, 781, 939, 1124, 1424
BspANI GGCC 6 cut(s) 5, 83, 203, 248, 563, 834
BspCNI CTCAG 2 cut(s) 124, 1365
BspFNI CGCG 2 cut(s) 783, 1426
BspHI TCATGA 1 cut(s) 756
BspLI GGNNCC 3 cut(s) 95, 367, 1203
BspMI ACCTGC 1 cut(s) 749
BspPI GGATC 4 cut(s) 332, 784, 1189, 1396
BspT104I TTCGAA 1 cut(s) 1296
BspTNI GGTCTC 2 cut(s) 916, 974
BssECI CCNNGG 8 cut(s) 120, 198, 409, 630, 813, 829, 1023, 1343
BssMI GATC 6 cut(s) 337, 343, 594, 789, 1181, 1388
BssT1I CCWWGG 3 cut(s) 198, 813, 1343
Bst2UI CCWGG 4 cut(s) 411, 632, 831, 1206
Bst4CI ACNGT 5 cut(s) 388, 718, 871, 1249, 1340
Bst6I CTCTTC 3 cut(s) 1259, 1304, 1404
BstBI TTCGAA 1 cut(s) 1296
BstC8I GCNNGC 4 cut(s) 361, 712, 936, 999
BstDEI CTNAG 5 cut(s) 111, 836, 990, 1373, 1379
BstDSI CCRYGG 1 cut(s) 1023
BstENI CCTNNNNNAGG 1 cut(s) 88
BstF5I GGATG 4 cut(s) 80, 681, 1089, 1243
BstFNI CGCG 2 cut(s) 783, 1426
BstHHI GCGC 1 cut(s) 884
BstKTI GATC 6 cut(s) 340, 346, 597, 792, 1184, 1391
BstMAI GTCTC 5 cut(s) 377, 453, 916, 974, 1440
BstMBI GATC 6 cut(s) 337, 343, 594, 789, 1181, 1388
BstMCI CGRYCG 1 cut(s) 498
BstMWI GCNNNNNNNGC 4 cut(s) 365, 374, 545, 1459
BstNI CCWGG 4 cut(s) 411, 632, 831, 1206
BstNSI RCATGY 1 cut(s) 934
BstSCI CCNGG 6 cut(s) 409, 630, 829, 1067, 1177, 1204
BstSFI CTRYAG 1 cut(s) 291
BstUI CGCG 2 cut(s) 783, 1426
BstV1I GCAGC 3 cut(s) 548, 560, 1086
BstX2I RGATCY 1 cut(s) 1181
BstXI CCANNNNNNTGG 1 cut(s) 820
BstYI RGATCY 1 cut(s) 1181
Bsu36I CCTNAGG 1 cut(s) 836
BsuRI GGCC 6 cut(s) 5, 83, 203, 248, 563, 834
BtgI CCRYGG 1 cut(s) 1023
BtrI CACGTC 1 cut(s) 169
BtsCI GGATG 4 cut(s) 80, 681, 1089, 1243
BtsIMutI CAGTG 1 cut(s) 723
BveI ACCTGC 1 cut(s) 749
Cac8I GCNNGC 4 cut(s) 361, 712, 936, 999
CciI TCATGA 1 cut(s) 756
CfoI GCGC 1 cut(s) 884
Cfr13I GGNCC 1 cut(s) 562
Csp6I GTAC 1 cut(s) 859
CviQI GTAC 1 cut(s) 859
DdeI CTNAG 5 cut(s) 111, 836, 990, 1373, 1379
DpnI GATC 6 cut(s) 339, 345, 596, 791, 1183, 1390
DpnII GATC 6 cut(s) 337, 343, 594, 789, 1181, 1388
DraIII CACNNNGTG 1 cut(s) 799
DrdI GACNNNNNNGTC 1 cut(s) 824
DseDI GACNNNNNNGTC 1 cut(s) 824
EaeI YGGCCR 1 cut(s) 246
Eam1104I CTCTTC 3 cut(s) 1259, 1304, 1404
EarI CTCTTC 3 cut(s) 1259, 1304, 1404
EciI GGCGGA 2 cut(s) 378, 1139
Eco130I CCWWGG 3 cut(s) 198, 813, 1343
Eco147I AGGCCT 2 cut(s) 83, 203
Eco24I GRGCYC 1 cut(s) 1032
Eco31I GGTCTC 2 cut(s) 916, 974
Eco57I CTGAAG 1 cut(s) 265
Eco81I CCTNAGG 1 cut(s) 836
Eco88I CYCGRG 2 cut(s) 119, 977
EcoNI CCTNNNNNAGG 1 cut(s) 88
EcoRI GAATTC 1 cut(s) 1292
EcoRII CCWGG 4 cut(s) 409, 630, 829, 1204
EcoT14I CCWWGG 3 cut(s) 198, 813, 1343
EcoT38I GRGCYC 1 cut(s) 1032
ErhI CCWWGG 3 cut(s) 198, 813, 1343
Esp3I CGTCTC 1 cut(s) 377
FaqI GGGAC 3 cut(s) 637, 812, 1405
FauI CCCGC 1 cut(s) 1431
FbaI TGATCA 1 cut(s) 594
Fnu4HI GCNGC 4 cut(s) 537, 549, 939, 1100
FokI GGATG 4 cut(s) 87, 668, 1096, 1250
FriOI GRGCYC 1 cut(s) 1032
Fsp4HI GCNGC 4 cut(s) 537, 549, 939, 1100
FspBI CTAG 3 cut(s) 425, 651, 1344
GlaI GCGC 1 cut(s) 883
GluI GCNGC 4 cut(s) 537, 549, 939, 1100
HaeIII GGCC 6 cut(s) 5, 83, 203, 248, 563, 834
HapII CCGG 5 cut(s) 372, 494, 1068, 1178, 1192
HhaI GCGC 1 cut(s) 884
Hin6I GCGC 1 cut(s) 882
HinP1I GCGC 1 cut(s) 882
HinfI GANTC 9 cut(s) 109, 172, 193, 327, 825, 846, 1044, 1270, 1351
HpaII CCGG 5 cut(s) 372, 494, 1068, 1178, 1192
HphI GGTGA 7 cut(s) 95, 670, 730, 778, 958, 1012, 1437
Hpy166II GTNNAC 2 cut(s) 853, 1336
Hpy188I TCNGA 5 cut(s) 114, 135, 284, 845, 1374
Hpy188III TCNNGA 9 cut(s) 176, 218, 257, 275, 341, 757, 874, 950, 979
Hpy8I GTNNAC 2 cut(s) 853, 1336
Hpy99I CGWCG 4 cut(s) 170, 701, 875, 956
HpyAV CCTTC 4 cut(s) 73, 215, 618, 1292
HpyCH4III ACNGT 5 cut(s) 388, 718, 871, 1249, 1340
HpyCH4IV ACGT 2 cut(s) 168, 1170
HpyCH4V TGCA 7 cut(s) 32, 146, 213, 777, 1229, 1259, 1322
HpyF10VI GCNNNNNNNGC 4 cut(s) 365, 374, 545, 1459
HpyF3I CTNAG 5 cut(s) 111, 836, 990, 1373, 1379
HpySE526I ACGT 2 cut(s) 168, 1170
HspAI GCGC 1 cut(s) 882
Ksp22I TGATCA 1 cut(s) 594
Kzo9I GATC 6 cut(s) 337, 343, 594, 789, 1181, 1388
LmnI GCTCC 4 cut(s) 365, 374, 731, 1201
Lsp1109I GCAGC 3 cut(s) 548, 560, 1086
LweI GCATC 1 cut(s) 406
MaeI CTAG 3 cut(s) 425, 651, 1344
MaeII ACGT 2 cut(s) 168, 1170
MaeIII GTNAC 3 cut(s) 526, 745, 964
MalI GATC 6 cut(s) 339, 345, 596, 791, 1183, 1390
MboI GATC 6 cut(s) 337, 343, 594, 789, 1181, 1388
MboII GAAGA 8 cut(s) 202, 781, 1176, 1276, 1321, 1360, 1413, 1421
MfeI CAATTG 1 cut(s) 1048
MflI RGATCY 1 cut(s) 1181
MhlI GDGCHC 1 cut(s) 1032
MlsI TGGCCA 1 cut(s) 248
MluCI AATT 8 cut(s) 332, 486, 517, 662, 734, 959, 1048, 1292
MluNI TGGCCA 1 cut(s) 248
MlyI GAGTC 3 cut(s) 103, 336, 834
MmeI TCCRAC 1 cut(s) 823
Mox20I TGGCCA 1 cut(s) 248
MscI TGGCCA 1 cut(s) 248
MseI TTAA 2 cut(s) 1104, 1480
MslI CAYNNNNRTG 1 cut(s) 872
Msp20I TGGCCA 1 cut(s) 248
MspI CCGG 5 cut(s) 372, 494, 1068, 1178, 1192
MspR9I CCNGG 6 cut(s) 411, 632, 831, 1069, 1179, 1206
MunI CAATTG 1 cut(s) 1048
Mva1269I GAATGC 2 cut(s) 449, 1277
MvaI CCWGG 4 cut(s) 411, 632, 831, 1206
MvnI CGCG 2 cut(s) 783, 1426
MwoI GCNNNNNNNGC 4 cut(s) 365, 374, 545, 1459
NciI CCSGG 2 cut(s) 1069, 1179
NdeII GATC 6 cut(s) 337, 343, 594, 789, 1181, 1388
NlaIV GGNNCC 3 cut(s) 95, 367, 1203
NmeAIII GCCGAG 1 cut(s) 256
NmuCI GTSAC 1 cut(s) 964
NspI RCATGY 1 cut(s) 934
NspV TTCGAA 1 cut(s) 1296
OliI CACNNNNGTG 1 cut(s) 872
PaeR7I CTCGAG 1 cut(s) 977
PagI TCATGA 1 cut(s) 756
PaqCI CACCTGC 1 cut(s) 749
PceI AGGCCT 2 cut(s) 83, 203
PctI GAATGC 2 cut(s) 449, 1277
PfeI GAWTC 6 cut(s) 172, 193, 846, 1044, 1270, 1351
PflFI GACNNNGTC 1 cut(s) 869
PkrI GCNGC 4 cut(s) 538, 550, 940, 1101
PleI GAGTC 3 cut(s) 103, 335, 833
PpsI GAGTC 3 cut(s) 103, 335, 833
Psp1406I AACGTT 1 cut(s) 1170
Psp6I CCWGG 4 cut(s) 409, 630, 829, 1204
PspGI CCWGG 4 cut(s) 409, 630, 829, 1204
PspN4I GGNNCC 3 cut(s) 95, 367, 1203
PspPI GGNCC 1 cut(s) 562
PsrI GAACNNNNNNTAC 2 cut(s) 47, 79
PsuI RGATCY 1 cut(s) 1181
PsyI GACNNNGTC 1 cut(s) 869
RsaI GTAC 1 cut(s) 860
RsaNI GTAC 1 cut(s) 859
RseI CAYNNNNRTG 1 cut(s) 872
SaqAI TTAA 2 cut(s) 1104, 1480
SatI GCNGC 4 cut(s) 537, 549, 939, 1100
Sau3AI GATC 6 cut(s) 337, 343, 594, 789, 1181, 1388
Sau96I GGNCC 1 cut(s) 562
SchI GAGTC 3 cut(s) 103, 336, 834
ScrFI CCNGG 6 cut(s) 411, 632, 831, 1069, 1179, 1206
SduI GDGCHC 1 cut(s) 1032
SfaNI GCATC 1 cut(s) 406
SfcI CTRYAG 1 cut(s) 291
Sfr274I CTCGAG 1 cut(s) 977
SfuI TTCGAA 1 cut(s) 1296
SlaI CTCGAG 1 cut(s) 977
SmiMI CAYNNNNRTG 1 cut(s) 872
SmlI CTYRAG 2 cut(s) 977, 1090
SmoI CTYRAG 2 cut(s) 977, 1090
Sse9I AATT 8 cut(s) 332, 486, 517, 662, 734, 959, 1048, 1292
SseBI AGGCCT 2 cut(s) 83, 203
SsiI CCGC 5 cut(s) 363, 781, 939, 1124, 1424
SspMI CTAG 3 cut(s) 425, 651, 1344
StuI AGGCCT 2 cut(s) 83, 203
StyD4I CCNGG 6 cut(s) 409, 630, 829, 1067, 1177, 1204
StyI CCWWGG 3 cut(s) 198, 813, 1343
TaaI ACNGT 5 cut(s) 388, 718, 871, 1249, 1340
TaiI ACGT 2 cut(s) 171, 1173
TasI AATT 8 cut(s) 332, 486, 517, 662, 734, 959, 1048, 1292
TauI GCSGC 1 cut(s) 941
TfiI GAWTC 6 cut(s) 172, 193, 846, 1044, 1270, 1351
Tru1I TTAA 2 cut(s) 1104, 1480
Tru9I TTAA 2 cut(s) 1104, 1480
TscAI CASTG 1 cut(s) 723
TseFI GTSAC 1 cut(s) 964
TseI GCWGC 3 cut(s) 536, 548, 1099
Tsp45I GTSAC 1 cut(s) 964
TspDTI ATGAA 7 cut(s) 203, 292, 655, 773, 972, 1254, 1422
TspRI CASTG 1 cut(s) 723
Tth111I GACNNNGTC 1 cut(s) 869
XagI CCTNNNNNAGG 1 cut(s) 88
XapI RAATTY 5 cut(s) 332, 662, 734, 959, 1292
XceI RCATGY 1 cut(s) 934
XhoI CTCGAG 1 cut(s) 977
XmaJI CCTAGG 1 cut(s) 1343
XspI CTAG 3 cut(s) 425, 651, 1344
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.