AT3G62320

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0017943
Physical Location & Seq
Reverse (-)
23061805 .. 23062398
594 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G62320.1

Sequence Viewer

Length: 516 bp
ATGTCGACATCCACTGTAGAAACTGGATATGGTGGTCGCATCAGAGTGACAGTGGCTAGAAATGACAGAGACATTACCAGTGAAGTGAGAACATTTCTGTGTAATAAAGAAAACGCGAACAAAATCATCGGTCTGGATACAGAACGATCGGTTGTAGGAGGCGATAGCGAATACCCACCGGAGAGCAAGCTCGTGATTCTCGAGCTCAGTGATGGCCAGAATTGCCTAATAATCCCGCTTCCTTATGTACAAGGTAATAAGCTGCCCGTTTCTCTCACCAATTTCCTCAATCTTCCAGATTTCACCTTTACAGGTGTTGGTATAAACAAGGCTTTGAAAATGCTCAAGAGCGAGTGTGGTTTGACCTGCAAGAATGCCGTTGATATCGGACCTTCGTCCCCTATCTATGAAGATTGGGACAATGACAGTCTTACCGAGGATCAGATCAATCTTGCAGCAGCGAATGCTTACTTGGCTTTCAAAGTTGGGAATTTGATTAGAGAAGCTATGTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DNA_pol_A_exo1

Protein Analysis

171

Amino Acids

18.71

Weight (kDa)

4.7

Isoelectric Point (pI)

40.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017943)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G62320 AT5G48350
fragaria_vesca FvH4_3g05762
prunus_persica Prupe.3G008200_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0013771
rosa_laevigata RLG00000032045
rosa_roxburghii Rroxscaffold_1G00062870
rosa_rugosa Rorug05G0012800
rosa_samantha Rh5BG103200 Rh5BG103300 Rh5CG115000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 374
AccI GTMKAC 1 cut(s) 5
AccII CGCG 1 cut(s) 116
AciI CCGC 1 cut(s) 236
AclWI GGATC 1 cut(s) 447
AcoI YGGCCR 1 cut(s) 214
AcsI RAATTY 1 cut(s) 490
AfaI GTAC 1 cut(s) 249
AgsI TTSAA 2 cut(s) 337, 481
AjuI GAANNNNNNNTTGG 2 cut(s) 455, 487
AluBI AGCT 4 cut(s) 190, 205, 262, 506
AluI AGCT 4 cut(s) 190, 205, 262, 506
Alw21I GWGCWC 1 cut(s) 207
Alw26I GTCTC 1 cut(s) 63
AlwI GGATC 1 cut(s) 447
Ama87I CYCGRG 1 cut(s) 200
AoxI GGCC 1 cut(s) 214
ApeKI GCWGC 3 cut(s) 262, 455, 458
ApoI RAATTY 1 cut(s) 490
AspS9I GGNCC 1 cut(s) 389
AsuHPI GGTGA 2 cut(s) 268, 295
AvaI CYCGRG 1 cut(s) 200
AvaII GGWCC 1 cut(s) 389
BalI TGGCCA 1 cut(s) 216
BanII GRGCYC 1 cut(s) 207
BauI CACGAG 1 cut(s) 191
Bbv12I GWGCWC 1 cut(s) 207
BbvI GCAGC 3 cut(s) 249, 467, 470
BccI CCATC 1 cut(s) 206
BceAI ACGGC 1 cut(s) 362
BciVI GTATCC 1 cut(s) 130
BcoDI GTCTC 1 cut(s) 63
BfaI CTAG 1 cut(s) 57
BfmI CTRYAG 1 cut(s) 15
BfuAI ACCTGC 1 cut(s) 374
BfuI GTATCC 1 cut(s) 130
BisI GCNGC 3 cut(s) 263, 456, 459
BlsI GCNGC 3 cut(s) 264, 457, 460
Bme18I GGWCC 1 cut(s) 389
BmeT110I CYCGRG 1 cut(s) 200
BmgT120I GGNCC 1 cut(s) 389
BmsI GCATC 1 cut(s) 48
BoxI GACNNNNGTC 1 cut(s) 394
BpuEI CTTGAG 1 cut(s) 329
BsaJI CCNNGG 1 cut(s) 435
BsaWI WCCGGW 1 cut(s) 178
Bse1I ACTGG 2 cut(s) 28, 78
BseDI CCNNGG 1 cut(s) 435
BseGI GGATG 1 cut(s) 8
BseMII CTCAG 1 cut(s) 220
BseNI ACTGG 2 cut(s) 28, 78
BseXI GCAGC 3 cut(s) 249, 467, 470
Bsh1236I CGCG 1 cut(s) 116
Bsh1285I CGRYCG 1 cut(s) 149
BshFI GGCC 1 cut(s) 216
BsiEI CGRYCG 1 cut(s) 149
BsiHKAI GWGCWC 1 cut(s) 207
BsiHKCI CYCGRG 1 cut(s) 200
BsiSI CCGG 1 cut(s) 179
BslFI GGGAC 2 cut(s) 382, 431
BsmAI GTCTC 1 cut(s) 63
BsmFI GGGAC 2 cut(s) 382, 431
BsmI GAATGC 2 cut(s) 379, 469
BsnI GGCC 1 cut(s) 216
BsoBI CYCGRG 1 cut(s) 200
Bsp1286I GDGCHC 1 cut(s) 207
Bsp1407I TGTACA 1 cut(s) 247
Bsp143I GATC 3 cut(s) 146, 439, 444
BspACI CCGC 1 cut(s) 236
BspANI GGCC 1 cut(s) 216
BspCNI CTCAG 1 cut(s) 219
BspFNI CGCG 1 cut(s) 116
BspMI ACCTGC 1 cut(s) 374
BspPI GGATC 1 cut(s) 447
BsrGI TGTACA 1 cut(s) 247
BsrI ACTGG 2 cut(s) 28, 78
BssECI CCNNGG 1 cut(s) 435
BssMI GATC 3 cut(s) 146, 439, 444
BssSI CACGAG 1 cut(s) 191
Bst2BI CACGAG 1 cut(s) 191
Bst4CI ACNGT 3 cut(s) 16, 52, 428
BstAPI GCANNNNNTGC 1 cut(s) 464
BstAUI TGTACA 1 cut(s) 247
BstC8I GCNNGC 1 cut(s) 188
BstDEI CTNAG 1 cut(s) 206
BstF5I GGATG 1 cut(s) 8
BstFNI CGCG 1 cut(s) 116
BstKTI GATC 3 cut(s) 149, 442, 447
BstMAI GTCTC 1 cut(s) 63
BstMBI GATC 3 cut(s) 146, 439, 444
BstMCI CGRYCG 1 cut(s) 149
BstMWI GCNNNNNNNGC 3 cut(s) 222, 464, 473
BstPAI GACNNNNGTC 1 cut(s) 394
BstSFI CTRYAG 1 cut(s) 15
BstUI CGCG 1 cut(s) 116
BstV1I GCAGC 3 cut(s) 249, 467, 470
BsuI GTATCC 1 cut(s) 130
BsuRI GGCC 1 cut(s) 216
BtsCI GGATG 1 cut(s) 8
BtsIMutI CAGTG 4 cut(s) 12, 57, 85, 214
BveI ACCTGC 1 cut(s) 374
Cac8I GCNNGC 1 cut(s) 188
Cfr13I GGNCC 1 cut(s) 389
Csp6I GTAC 1 cut(s) 248
CviJI RGCY 8 cut(s) 56, 190, 205, 216, 262, 332, 476, 506
CviKI_1 RGCY 8 cut(s) 56, 190, 205, 216, 262, 332, 476, 506
CviQI GTAC 1 cut(s) 248
DdeI CTNAG 1 cut(s) 206
DpnI GATC 3 cut(s) 148, 441, 446
DpnII GATC 3 cut(s) 146, 439, 444
EaeI YGGCCR 1 cut(s) 214
Ecl136II GAGCTC 1 cut(s) 205
Eco24I GRGCYC 1 cut(s) 207
Eco32I GATATC 1 cut(s) 385
Eco47I GGWCC 1 cut(s) 389
Eco53kI GAGCTC 1 cut(s) 205
Eco88I CYCGRG 1 cut(s) 200
EcoICRI GAGCTC 1 cut(s) 205
EcoRV GATATC 1 cut(s) 385
EcoT38I GRGCYC 1 cut(s) 207
FaiI YATR 5 cut(s) 30, 246, 323, 408, 509
FaqI GGGAC 2 cut(s) 382, 431
FauI CCCGC 1 cut(s) 243
FblI GTMKAC 1 cut(s) 5
Fnu4HI GCNGC 3 cut(s) 263, 456, 459
FriOI GRGCYC 1 cut(s) 207
Fsp4HI GCNGC 3 cut(s) 263, 456, 459
FspBI CTAG 1 cut(s) 57
GluI GCNGC 3 cut(s) 263, 456, 459
HaeIII GGCC 1 cut(s) 216
HapII CCGG 1 cut(s) 179
HincII GTYRAC 1 cut(s) 6
HindII GTYRAC 1 cut(s) 6
HinfI GANTC 1 cut(s) 196
HpaII CCGG 1 cut(s) 179
HphI GGTGA 2 cut(s) 268, 295
Hpy166II GTNNAC 1 cut(s) 6
Hpy188I TCNGA 3 cut(s) 44, 389, 444
Hpy188III TCNNGA 5 cut(s) 134, 193, 200, 296, 346
Hpy8I GTNNAC 1 cut(s) 6
HpyAV CCTTC 1 cut(s) 402
HpyCH4III ACNGT 3 cut(s) 16, 52, 428
HpyCH4V TGCA 2 cut(s) 369, 455
HpyF10VI GCNNNNNNNGC 3 cut(s) 222, 464, 473
HpyF3I CTNAG 1 cut(s) 206
Kzo9I GATC 3 cut(s) 146, 439, 444
LpnPI CCDG 8 cut(s) 9, 91, 119, 192, 230, 297, 309, 379
Lsp1109I GCAGC 3 cut(s) 249, 467, 470
LweI GCATC 1 cut(s) 48
MaeI CTAG 1 cut(s) 57
MaeIII GTNAC 1 cut(s) 46
MalI GATC 3 cut(s) 148, 441, 446
MboI GATC 3 cut(s) 146, 439, 444
MboII GAAGA 2 cut(s) 284, 422
MhlI GDGCHC 1 cut(s) 207
MlsI TGGCCA 1 cut(s) 216
MluCI AATT 3 cut(s) 220, 280, 490
MluNI TGGCCA 1 cut(s) 216
MnlI CCTC 3 cut(s) 152, 296, 430
Mox20I TGGCCA 1 cut(s) 216
MscI TGGCCA 1 cut(s) 216
MslI CAYNNNNRTG 2 cut(s) 44, 97
Msp20I TGGCCA 1 cut(s) 216
MspI CCGG 1 cut(s) 179
Mva1269I GAATGC 2 cut(s) 379, 469
MvnI CGCG 1 cut(s) 116
MwoI GCNNNNNNNGC 3 cut(s) 222, 464, 473
NdeII GATC 3 cut(s) 146, 439, 444
NmuCI GTSAC 1 cut(s) 46
PaeR7I CTCGAG 1 cut(s) 200
PcsI WCGNNNNNNNCGW 1 cut(s) 198
PctI GAATGC 2 cut(s) 379, 469
PfeI GAWTC 1 cut(s) 196
PkrI GCNGC 3 cut(s) 264, 457, 460
Ple19I CGATCG 1 cut(s) 149
PshAI GACNNNNGTC 1 cut(s) 394
Psp124BI GAGCTC 1 cut(s) 207
PspPI GGNCC 1 cut(s) 389
PvuI CGATCG 1 cut(s) 149
RsaI GTAC 1 cut(s) 249
RsaNI GTAC 1 cut(s) 248
RseI CAYNNNNRTG 2 cut(s) 44, 97
SacI GAGCTC 1 cut(s) 207
SalI GTCGAC 1 cut(s) 4
SatI GCNGC 3 cut(s) 263, 456, 459
Sau3AI GATC 3 cut(s) 146, 439, 444
Sau96I GGNCC 1 cut(s) 389
SduI GDGCHC 1 cut(s) 207
SetI ASST 9 cut(s) 192, 207, 256, 264, 308, 316, 368, 394, 508
SfaNI GCATC 1 cut(s) 48
SfcI CTRYAG 1 cut(s) 15
Sfr274I CTCGAG 1 cut(s) 200
SinI GGWCC 1 cut(s) 389
SlaI CTCGAG 1 cut(s) 200
SmiMI CAYNNNNRTG 2 cut(s) 44, 97
SmlI CTYRAG 2 cut(s) 200, 344
SmoI CTYRAG 2 cut(s) 200, 344
Sse9I AATT 3 cut(s) 220, 280, 490
SsiI CCGC 1 cut(s) 236
SspMI CTAG 1 cut(s) 57
SstI GAGCTC 1 cut(s) 207
TaaI ACNGT 3 cut(s) 16, 52, 428
TaqI TCGA 2 cut(s) 5, 201
TaqII GACCGA 1 cut(s) 119
TasI AATT 3 cut(s) 220, 280, 490
TatI WGTACW 1 cut(s) 247
TfiI GAWTC 1 cut(s) 196
TscAI CASTG 4 cut(s) 19, 57, 85, 214
TseFI GTSAC 1 cut(s) 46
TseI GCWGC 3 cut(s) 262, 455, 458
Tsp45I GTSAC 1 cut(s) 46
TspDTI ATGAA 1 cut(s) 423
TspRI CASTG 4 cut(s) 19, 57, 85, 214
VpaK11BI GGWCC 1 cut(s) 389
XapI RAATTY 1 cut(s) 490
XhoI CTCGAG 1 cut(s) 200
XmiI GTMKAC 1 cut(s) 5
XspI CTAG 1 cut(s) 57
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.