Rh5BG103200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0017943
Physical Location & Seq
Forward (+)
9432762 .. 9433890
1129 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG103200.1

Sequence Viewer

Length: 342 bp
ATGGCACACCTAAGAGATCACGACGACAAACATGCAGCAATATACTCCTATCACATAAAGTCCAATTACAGACACATTGCAAAGAACAAGAATGATGACGGATTTGGTTTGGTGGGCACTGGGCAGAGCATATCATCTTTTTCAGATCTGGGCACATCTTCCTCTTCCATTATGTCTATTGTAGTTATCGGGTACCGGAGGATATCTGCAACCGTCGCAAAGAGAAACAAAGACGTTAATGATTCCATAGAAAAGTTTTTGTCAAATAAGAACCATGTTATCGGCCTGGACATAGAGTGGAGCTTAAGCCGAGATTCAGAAGGTGAACAAGAAGCAAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

113

Amino Acids

12.58

Weight (kDa)

7.02

Isoelectric Point (pI)

59.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017943)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G62320 AT5G48350
fragaria_vesca FvH4_3g05762
prunus_persica Prupe.3G008200_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0013771
rosa_laevigata RLG00000032045
rosa_roxburghii Rroxscaffold_1G00062870
rosa_rugosa Rorug05G0012800
rosa_samantha Rh5BG103200 Rh5BG103300 Rh5CG115000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 192
AccB1I GGYRCC 1 cut(s) 192
AfaI GTAC 1 cut(s) 194
AflII CTTAAG 1 cut(s) 304
AjnI CCWGG 1 cut(s) 285
AluBI AGCT 1 cut(s) 303
AluI AGCT 1 cut(s) 303
AoxI GGCC 1 cut(s) 283
ApeKI GCWGC 1 cut(s) 35
Asp718I GGTACC 1 cut(s) 192
AsuHPI GGTGA 1 cut(s) 335
BaeGI GKGCMC 2 cut(s) 119, 155
BanI GGYRCC 1 cut(s) 192
BbvI GCAGC 1 cut(s) 47
BcgI CGANNNNNNTGC 2 cut(s) 14, 48
BciT130I CCWGG 1 cut(s) 287
BfrI CTTAAG 1 cut(s) 304
BglII AGATCT 1 cut(s) 145
BisI GCNGC 1 cut(s) 36
BlsI GCNGC 1 cut(s) 37
Bme1390I CCNGG 1 cut(s) 287
BmiI GGNNCC 1 cut(s) 194
BmrFI CCNGG 1 cut(s) 287
BmrI ACTGGG 1 cut(s) 129
BmuI ACTGGG 1 cut(s) 129
BsaWI WCCGGW 1 cut(s) 195
Bse1I ACTGG 1 cut(s) 124
Bse3DI GCAATG 1 cut(s) 75
BseBI CCWGG 1 cut(s) 287
BseMI GCAATG 1 cut(s) 75
BseNI ACTGG 1 cut(s) 124
BseSI GKGCMC 2 cut(s) 119, 155
BseXI GCAGC 1 cut(s) 47
BshFI GGCC 1 cut(s) 285
BshNI GGYRCC 1 cut(s) 192
BsiSI CCGG 1 cut(s) 196
BsnI GGCC 1 cut(s) 285
Bsp1286I GDGCHC 2 cut(s) 119, 155
Bsp143I GATC 2 cut(s) 16, 145
BspANI GGCC 1 cut(s) 285
BspLI GGNNCC 1 cut(s) 194
BspT107I GGYRCC 1 cut(s) 192
BspTI CTTAAG 1 cut(s) 304
BsrDI GCAATG 1 cut(s) 75
BsrI ACTGG 1 cut(s) 124
BssMI GATC 2 cut(s) 16, 145
Bst2UI CCWGG 1 cut(s) 287
Bst4CI ACNGT 1 cut(s) 214
Bst6I CTCTTC 1 cut(s) 169
BstAFI CTTAAG 1 cut(s) 304
BstDEI CTNAG 1 cut(s) 11
BstKTI GATC 2 cut(s) 19, 148
BstMBI GATC 2 cut(s) 16, 145
BstMWI GCNNNNNNNGC 1 cut(s) 215
BstNI CCWGG 1 cut(s) 287
BstNSI RCATGY 1 cut(s) 35
BstSCI CCNGG 1 cut(s) 285
BstSLI GKGCMC 2 cut(s) 119, 155
BstV1I GCAGC 1 cut(s) 47
BstX2I RGATCY 1 cut(s) 145
BstYI RGATCY 1 cut(s) 145
BsuRI GGCC 1 cut(s) 285
BtsIMutI CAGTG 1 cut(s) 117
Csp6I GTAC 1 cut(s) 193
CviAII CATG 2 cut(s) 32, 275
CviJI RGCY 3 cut(s) 285, 303, 309
CviKI_1 RGCY 3 cut(s) 285, 303, 309
CviQI GTAC 1 cut(s) 193
DdeI CTNAG 1 cut(s) 11
DpnI GATC 2 cut(s) 18, 147
DpnII GATC 2 cut(s) 16, 145
Eam1104I CTCTTC 1 cut(s) 169
EarI CTCTTC 1 cut(s) 169
Eco32I GATATC 1 cut(s) 204
EcoRII CCWGG 1 cut(s) 285
EcoRV GATATC 1 cut(s) 204
FaeI CATG 2 cut(s) 35, 278
FaiI YATR 8 cut(s) 33, 43, 56, 131, 173, 248, 276, 293
FatI CATG 2 cut(s) 31, 274
Fnu4HI GCNGC 1 cut(s) 36
Fsp4HI GCNGC 1 cut(s) 36
GluI GCNGC 1 cut(s) 36
HaeIII GGCC 1 cut(s) 285
HapII CCGG 1 cut(s) 196
Hin1II CATG 2 cut(s) 35, 278
HinfI GANTC 2 cut(s) 242, 314
HpaII CCGG 1 cut(s) 196
HphI GGTGA 1 cut(s) 335
Hpy166II GTNNAC 1 cut(s) 326
Hpy188I TCNGA 2 cut(s) 145, 319
Hpy188III TCNNGA 1 cut(s) 20
Hpy8I GTNNAC 1 cut(s) 326
Hpy99I CGWCG 2 cut(s) 26, 218
HpyAV CCTTC 1 cut(s) 314
HpyCH4III ACNGT 1 cut(s) 214
HpyCH4IV ACGT 1 cut(s) 234
HpyCH4V TGCA 3 cut(s) 35, 80, 209
HpyF10VI GCNNNNNNNGC 1 cut(s) 215
HpyF3I CTNAG 1 cut(s) 11
HpySE526I ACGT 1 cut(s) 234
Hsp92II CATG 2 cut(s) 35, 278
KpnI GGTACC 1 cut(s) 196
Kzo9I GATC 2 cut(s) 16, 145
LmnI GCTCC 1 cut(s) 300
LpnPI CCDG 5 cut(s) 105, 134, 209, 272, 299
Lsp1109I GCAGC 1 cut(s) 47
MaeII ACGT 1 cut(s) 234
MalI GATC 2 cut(s) 18, 147
MboI GATC 2 cut(s) 16, 145
MboII GAAGA 2 cut(s) 150, 156
MflI RGATCY 1 cut(s) 145
MhlI GDGCHC 2 cut(s) 119, 155
MluCI AATT 1 cut(s) 64
MnlI CCTC 2 cut(s) 172, 192
MseI TTAA 2 cut(s) 237, 305
MspCI CTTAAG 1 cut(s) 304
MspI CCGG 1 cut(s) 196
MspR9I CCNGG 1 cut(s) 287
MvaI CCWGG 1 cut(s) 287
MwoI GCNNNNNNNGC 1 cut(s) 215
NdeII GATC 2 cut(s) 16, 145
NlaIII CATG 2 cut(s) 35, 278
NlaIV GGNNCC 1 cut(s) 194
NmeAIII GCCGAG 1 cut(s) 335
NspI RCATGY 1 cut(s) 35
PfeI GAWTC 2 cut(s) 242, 314
PkrI GCNGC 1 cut(s) 37
Psp6I CCWGG 1 cut(s) 285
PspGI CCWGG 1 cut(s) 285
PspN4I GGNNCC 1 cut(s) 194
PsuI RGATCY 1 cut(s) 145
RsaI GTAC 1 cut(s) 194
RsaNI GTAC 1 cut(s) 193
SaqAI TTAA 2 cut(s) 237, 305
SatI GCNGC 1 cut(s) 36
Sau3AI GATC 2 cut(s) 16, 145
ScrFI CCNGG 1 cut(s) 287
SduI GDGCHC 2 cut(s) 119, 155
SetI ASST 4 cut(s) 12, 237, 305, 325
SmlI CTYRAG 1 cut(s) 304
SmoI CTYRAG 1 cut(s) 304
Sse9I AATT 1 cut(s) 64
StyD4I CCNGG 1 cut(s) 285
TaaI ACNGT 1 cut(s) 214
TaiI ACGT 1 cut(s) 237
TasI AATT 1 cut(s) 64
TfiI GAWTC 2 cut(s) 242, 314
Tru1I TTAA 2 cut(s) 237, 305
Tru9I TTAA 2 cut(s) 237, 305
TscAI CASTG 1 cut(s) 124
TseI GCWGC 1 cut(s) 35
TspGWI ACGGA 1 cut(s) 114
TspRI CASTG 1 cut(s) 124
Vha464I CTTAAG 1 cut(s) 304
XceI RCATGY 1 cut(s) 35
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.