RLG00000032045

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0017943
Physical Location & Seq
Forward (+)
10402268 .. 10402860
593 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000032045

Sequence Viewer

Length: 477 bp
ATGTCTATTGTAGTTATCGGGTCCCGGAGGATATCTGCAACCGTCGCAAAGAGAAACAAAGGCGTAGATGATTCCATAGAAAAGTTTTTGTCAAATAAGAACCATCTTCCTCACTTGGATTCAGTACCAACGTCACTCTGCAATTTTCTTCAACTACCGGATTACACATTTGTGGGGTTTGACATTGCGAGAAGCATGGAAAGGCTGGATAAAGAGTGCGGTTTCGGTTGCAAGAACTGTGCTGATATGAGGACTATGGCTGCAAAGTTTGACGACGAGCAGCCCTATGCTGCTTTCTGGGGGTCTCTGCTAAAATGGCTGAAGATCTTTGTTACGAGGGTAAAGTTGATAAACCCAAGAGTGCAGCTTTTGACGACTGGGGTAATAGATATCTCAACGAAAACCAGGTCAACCGCGCTACTATTAATGTCTATGCTTACCGTGAACTTGGAGCATCGTTGGGGCATTTTTAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DNA_pol_A_exo1

Protein Analysis

159

Amino Acids

17.94

Weight (kDa)

9.47

Isoelectric Point (pI)

44.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017943)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G62320 AT5G48350
fragaria_vesca FvH4_3g05762
prunus_persica Prupe.3G008200_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0013771
rosa_laevigata RLG00000032045
rosa_roxburghii Rroxscaffold_1G00062870
rosa_rugosa Rorug05G0012800
rosa_samantha Rh5BG103200 Rh5BG103300 Rh5CG115000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 416
AciI CCGC 2 cut(s) 219, 414
AcuI CTGAAG 1 cut(s) 341
AfaI GTAC 1 cut(s) 126
AgsI TTSAA 1 cut(s) 152
AjnI CCWGG 1 cut(s) 404
AleI CACNNNNGTG 1 cut(s) 170
AluBI AGCT 1 cut(s) 367
AluI AGCT 1 cut(s) 367
Alw26I GTCTC 1 cut(s) 309
ApeKI GCWGC 4 cut(s) 260, 280, 290, 364
ArsI GACNNNNNNTTYG 2 cut(s) 392, 424
AseI ATTAAT 1 cut(s) 425
AspLEI GCGC 1 cut(s) 418
AspS9I GGNCC 1 cut(s) 21
AsuC2I CCSGG 1 cut(s) 25
AvaII GGWCC 1 cut(s) 21
BbvI GCAGC 4 cut(s) 247, 277, 292, 376
BccI CCATC 1 cut(s) 111
BciT130I CCWGG 1 cut(s) 406
BcnI CCSGG 1 cut(s) 25
BcoDI GTCTC 1 cut(s) 309
BglII AGATCT 1 cut(s) 324
BisI GCNGC 4 cut(s) 261, 281, 291, 365
BlsI GCNGC 4 cut(s) 262, 282, 292, 366
Bme1390I CCNGG 2 cut(s) 25, 406
Bme18I GGWCC 1 cut(s) 21
BmgT120I GGNCC 1 cut(s) 21
BmiI GGNNCC 2 cut(s) 22, 23
BmrFI CCNGG 2 cut(s) 25, 406
BmrI ACTGGG 1 cut(s) 387
BmsI GCATC 1 cut(s) 463
BmuI ACTGGG 1 cut(s) 387
BpuMI CCSGG 1 cut(s) 25
BsaI GGTCTC 1 cut(s) 309
BsaWI WCCGGW 1 cut(s) 157
Bse1I ACTGG 1 cut(s) 382
Bse3DI GCAATG 1 cut(s) 183
BseBI CCWGG 1 cut(s) 406
BseMI GCAATG 1 cut(s) 183
BseNI ACTGG 1 cut(s) 382
BseXI GCAGC 4 cut(s) 247, 277, 292, 376
BsgI GTGCAG 1 cut(s) 383
Bsh1236I CGCG 1 cut(s) 416
BsiSI CCGG 2 cut(s) 25, 158
BslFI GGGAC 1 cut(s) 7
BsmAI GTCTC 1 cut(s) 309
BsmFI GGGAC 1 cut(s) 7
Bso31I GGTCTC 1 cut(s) 309
Bsp143I GATC 1 cut(s) 324
BspACI CCGC 2 cut(s) 219, 414
BspFNI CGCG 1 cut(s) 416
BspLI GGNNCC 2 cut(s) 22, 23
BspTNI GGTCTC 1 cut(s) 309
BsrDI GCAATG 1 cut(s) 183
BsrI ACTGG 1 cut(s) 382
BssMI GATC 1 cut(s) 324
Bst2UI CCWGG 1 cut(s) 406
Bst4CI ACNGT 3 cut(s) 43, 239, 442
BstFNI CGCG 1 cut(s) 416
BstHHI GCGC 1 cut(s) 418
BstKTI GATC 1 cut(s) 327
BstMAI GTCTC 1 cut(s) 309
BstMBI GATC 1 cut(s) 324
BstMWI GCNNNNNNNGC 2 cut(s) 44, 316
BstNI CCWGG 1 cut(s) 406
BstSCI CCNGG 2 cut(s) 23, 404
BstUI CGCG 1 cut(s) 416
BstV1I GCAGC 4 cut(s) 247, 277, 292, 376
BstX2I RGATCY 1 cut(s) 324
BstYI RGATCY 1 cut(s) 324
CfoI GCGC 1 cut(s) 418
Cfr13I GGNCC 1 cut(s) 21
CsiI ACCWGGT 1 cut(s) 404
Csp6I GTAC 1 cut(s) 125
CviAII CATG 1 cut(s) 196
CviJI RGCY 5 cut(s) 205, 260, 283, 319, 367
CviKI_1 RGCY 5 cut(s) 205, 260, 283, 319, 367
CviQI GTAC 1 cut(s) 125
DpnI GATC 1 cut(s) 326
DpnII GATC 1 cut(s) 324
Eco31I GGTCTC 1 cut(s) 309
Eco32I GATATC 2 cut(s) 33, 391
Eco47I GGWCC 1 cut(s) 21
Eco57I CTGAAG 1 cut(s) 341
EcoO109I RGGNCCY 1 cut(s) 21
EcoRII CCWGG 1 cut(s) 404
EcoRV GATATC 2 cut(s) 33, 391
FaeI CATG 1 cut(s) 199
FaiI YATR 6 cut(s) 77, 197, 248, 257, 288, 434
FaqI GGGAC 1 cut(s) 7
FatI CATG 1 cut(s) 195
Fnu4HI GCNGC 4 cut(s) 261, 281, 291, 365
Fsp4HI GCNGC 4 cut(s) 261, 281, 291, 365
GlaI GCGC 1 cut(s) 417
GluI GCNGC 4 cut(s) 261, 281, 291, 365
HapII CCGG 2 cut(s) 25, 158
HhaI GCGC 1 cut(s) 418
Hin1II CATG 1 cut(s) 199
Hin6I GCGC 1 cut(s) 416
HinP1I GCGC 1 cut(s) 416
HincII GTYRAC 1 cut(s) 411
HindII GTYRAC 1 cut(s) 411
HinfI GANTC 2 cut(s) 71, 119
HpaII CCGG 2 cut(s) 25, 158
Hpy166II GTNNAC 2 cut(s) 411, 445
Hpy8I GTNNAC 2 cut(s) 411, 445
Hpy99I CGWCG 2 cut(s) 47, 278
HpyCH4III ACNGT 3 cut(s) 43, 239, 442
HpyCH4IV ACGT 1 cut(s) 131
HpyCH4V TGCA 5 cut(s) 38, 141, 231, 263, 364
HpyF10VI GCNNNNNNNGC 2 cut(s) 44, 316
HpySE526I ACGT 1 cut(s) 131
Hsp92II CATG 1 cut(s) 199
HspAI GCGC 1 cut(s) 416
KflI GGGWCCC 1 cut(s) 21
Kzo9I GATC 1 cut(s) 324
LmnI GCTCC 1 cut(s) 451
LpnPI CCDG 7 cut(s) 38, 171, 191, 283, 363, 391, 418
Lsp1109I GCAGC 4 cut(s) 247, 277, 292, 376
LweI GCATC 1 cut(s) 463
MabI ACCWGGT 1 cut(s) 404
MaeII ACGT 1 cut(s) 131
MaeIII GTNAC 2 cut(s) 132, 331
MalI GATC 1 cut(s) 326
MboI GATC 1 cut(s) 324
MboII GAAGA 3 cut(s) 98, 140, 334
MflI RGATCY 1 cut(s) 324
MluCI AATT 1 cut(s) 142
MnlI CCTC 4 cut(s) 21, 120, 243, 330
MseI TTAA 1 cut(s) 425
MslI CAYNNNNRTG 1 cut(s) 170
MspI CCGG 2 cut(s) 25, 158
MspR9I CCNGG 2 cut(s) 25, 406
MvaI CCWGG 1 cut(s) 406
MvnI CGCG 1 cut(s) 416
MwoI GCNNNNNNNGC 2 cut(s) 44, 316
NciI CCSGG 1 cut(s) 25
NdeII GATC 1 cut(s) 324
NlaIII CATG 1 cut(s) 199
NlaIV GGNNCC 2 cut(s) 22, 23
NmuCI GTSAC 1 cut(s) 132
OliI CACNNNNGTG 1 cut(s) 170
PfeI GAWTC 2 cut(s) 71, 119
PfoI TCCNGGA 1 cut(s) 23
PkrI GCNGC 4 cut(s) 262, 282, 292, 366
PpuMI RGGWCCY 1 cut(s) 21
PshBI ATTAAT 1 cut(s) 425
Psp5II RGGWCCY 1 cut(s) 21
Psp6I CCWGG 1 cut(s) 404
PspGI CCWGG 1 cut(s) 404
PspN4I GGNNCC 2 cut(s) 22, 23
PspPI GGNCC 1 cut(s) 21
PspPPI RGGWCCY 1 cut(s) 21
PsuI RGATCY 1 cut(s) 324
RsaI GTAC 1 cut(s) 126
RsaNI GTAC 1 cut(s) 125
RseI CAYNNNNRTG 1 cut(s) 170
SaqAI TTAA 1 cut(s) 425
SatI GCNGC 4 cut(s) 261, 281, 291, 365
Sau3AI GATC 1 cut(s) 324
Sau96I GGNCC 1 cut(s) 21
ScrFI CCNGG 2 cut(s) 25, 406
SetI ASST 4 cut(s) 134, 369, 410, 476
SexAI ACCWGGT 1 cut(s) 404
SfaNI GCATC 1 cut(s) 463
SinI GGWCC 1 cut(s) 21
SmiMI CAYNNNNRTG 1 cut(s) 170
Sse9I AATT 1 cut(s) 142
SsiI CCGC 2 cut(s) 219, 414
StyD4I CCNGG 2 cut(s) 23, 404
TaaI ACNGT 3 cut(s) 43, 239, 442
TaiI ACGT 1 cut(s) 134
TasI AATT 1 cut(s) 142
TfiI GAWTC 2 cut(s) 71, 119
Tru1I TTAA 1 cut(s) 425
Tru9I TTAA 1 cut(s) 425
TseFI GTSAC 1 cut(s) 132
TseI GCWGC 4 cut(s) 260, 280, 290, 364
Tsp45I GTSAC 1 cut(s) 132
VpaK11BI GGWCC 1 cut(s) 21
VspI ATTAAT 1 cut(s) 425
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.