FvH4_3g05762

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0017943
Physical Location & Seq
Reverse (-)
3372768 .. 3373883
1116 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g05762.t1

Sequence Viewer

Length: 642 bp
ATGTCTACTGTAGTTAAAATCGGGCCCTGCATTGAGATGTCTGCAACCGTCGCAAAGAAGAACAAAGACGTTGATGAATCCATTGAAAAGTTCTTGTCTACGAATAAGAACTTTGTTATCGGCCTGAACATAGAGTTGAGTTTTAGCCGAGATTCAGAAGTTCTAACAAGAAGCAAAATAGCTATTCTGTCACTGTGTGATGGCCAGCATTGCCTTATTGTTCAGCTTCCTCACTTGGACTCAGTACCAACCTCGCTCTGTAATTTTCTTCAACTAACGGATTACACATTTGTGGGATTCGACATTGCGAGAAGCATGGAAAGGCTGGAGAAAGAGTACGGTTTCGGCTGCAAGAACTACGATGATTTGAAGACTATGGCTGCAAAATATGACAACCAGCAGGGCTATGCTGCTTTCTGGGGTTCTGCTAGCATGGTTGATAATCTTCGTTATGAAAAGTTCCGAACTGGAGTCTTTTCCAGTTGGAATCCCTTTGAAGGTAATCGTGATAAACTTAAGAATGCGGTTTTTTACAACTGGGGTGATAGATATCTCAACGAAAACCAGGTCACTCGTGCTACTATCAATGTCTATGTTAATCATAGACTTGGGGAAGCGTTGGGTTCATCCGCTGCGTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DNA_pol_A_exo1

Protein Analysis

214

Amino Acids

24.05

Weight (kDa)

6.31

Isoelectric Point (pI)

36.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017943)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G62320 AT5G48350
fragaria_vesca FvH4_3g05762
prunus_persica Prupe.3G008200_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0013771
rosa_laevigata RLG00000032045
rosa_roxburghii Rroxscaffold_1G00062870
rosa_rugosa Rorug05G0012800
rosa_samantha Rh5BG103200 Rh5BG103300 Rh5CG115000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 5, 98
AciI CCGC 2 cut(s) 524, 630
AcoI YGGCCR 1 cut(s) 202
AdeI CACNNNGTG 1 cut(s) 197
AfaI GTAC 2 cut(s) 246, 338
AfiI CCNNNNNNNGG 1 cut(s) 497
AflII CTTAAG 1 cut(s) 515
AgsI TTSAA 4 cut(s) 86, 272, 370, 497
AjnI CCWGG 1 cut(s) 564
AleI CACNNNNGTG 1 cut(s) 290
AluBI AGCT 2 cut(s) 182, 226
AluI AGCT 2 cut(s) 182, 226
AoxI GGCC 3 cut(s) 23, 121, 202
ApaI GGGCCC 1 cut(s) 27
ApeKI GCWGC 4 cut(s) 348, 380, 410, 632
ArsI GACNNNNNNTTYG 2 cut(s) 552, 584
AspS9I GGNCC 2 cut(s) 23, 24
AsuHPI GGTGA 1 cut(s) 554
AsuNHI GCTAGC 1 cut(s) 428
BaeGI GKGCMC 1 cut(s) 27
BalI TGGCCA 1 cut(s) 204
BanII GRGCYC 1 cut(s) 27
BauI CACGAG 1 cut(s) 573
BbsI GAAGAC 1 cut(s) 377
BbvI GCAGC 4 cut(s) 335, 367, 397, 619
BccI CCATC 1 cut(s) 194
BciT130I CCWGG 1 cut(s) 566
BfaI CTAG 1 cut(s) 429
BfmI CTRYAG 1 cut(s) 9
BfrI CTTAAG 1 cut(s) 515
BisI GCNGC 4 cut(s) 349, 381, 411, 633
BlsI GCNGC 4 cut(s) 350, 382, 412, 634
Bme1390I CCNGG 1 cut(s) 566
BmgT120I GGNCC 2 cut(s) 23, 24
BmiI GGNNCC 1 cut(s) 25
BmrFI CCNGG 1 cut(s) 566
BmrI ACTGGG 1 cut(s) 547
BmtI GCTAGC 1 cut(s) 432
BmuI ACTGGG 1 cut(s) 547
BpiI GAAGAC 1 cut(s) 377
BpmI CTGGAG 2 cut(s) 347, 489
BsaBI GATNNNNATC 1 cut(s) 549
BsaXI ACNNNNNCTCC 2 cut(s) 320, 350
Bsc4I CCNNNNNNNGG 1 cut(s) 497
Bse1I ACTGG 3 cut(s) 472, 480, 542
Bse3DI GCAATG 2 cut(s) 208, 303
Bse8I GATNNNNATC 1 cut(s) 549
BseBI CCWGG 1 cut(s) 566
BseGI GGATG 1 cut(s) 626
BseJI GATNNNNATC 1 cut(s) 549
BseLI CCNNNNNNNGG 1 cut(s) 497
BseMI GCAATG 2 cut(s) 208, 303
BseMII CTCAG 1 cut(s) 255
BseNI ACTGG 3 cut(s) 472, 480, 542
BseSI GKGCMC 1 cut(s) 27
BseXI GCAGC 4 cut(s) 335, 367, 397, 619
BshFI GGCC 3 cut(s) 25, 123, 204
BslI CCNNNNNNNGG 1 cut(s) 497
BsmI GAATGC 1 cut(s) 526
BsnI GGCC 3 cut(s) 25, 123, 204
Bsp120I GGGCCC 1 cut(s) 23
Bsp1286I GDGCHC 1 cut(s) 27
BspACI CCGC 2 cut(s) 524, 630
BspANI GGCC 3 cut(s) 25, 123, 204
BspCNI CTCAG 1 cut(s) 254
BspLI GGNNCC 1 cut(s) 25
BspOI GCTAGC 1 cut(s) 432
BspTI CTTAAG 1 cut(s) 515
BsrDI GCAATG 2 cut(s) 208, 303
BsrI ACTGG 3 cut(s) 472, 480, 542
BssSI CACGAG 1 cut(s) 573
Bst2BI CACGAG 1 cut(s) 573
Bst2UI CCWGG 1 cut(s) 566
Bst4CI ACNGT 4 cut(s) 10, 49, 195, 341
BstAFI CTTAAG 1 cut(s) 515
BstC8I GCNNGC 2 cut(s) 206, 430
BstDEI CTNAG 1 cut(s) 241
BstF5I GGATG 1 cut(s) 626
BstMWI GCNNNNNNNGC 2 cut(s) 50, 210
BstNI CCWGG 1 cut(s) 566
BstSCI CCNGG 1 cut(s) 564
BstSFI CTRYAG 1 cut(s) 9
BstSLI GKGCMC 1 cut(s) 27
BstV1I GCAGC 4 cut(s) 335, 367, 397, 619
BstV2I GAAGAC 1 cut(s) 377
BsuRI GGCC 3 cut(s) 25, 123, 204
BtsCI GGATG 1 cut(s) 626
BtsIMutI CAGTG 1 cut(s) 191
Cac8I GCNNGC 2 cut(s) 206, 430
Cfr13I GGNCC 2 cut(s) 23, 24
CseI GACGC 1 cut(s) 624
CsiI ACCWGGT 1 cut(s) 564
Csp6I GTAC 2 cut(s) 245, 337
CviAII CATG 2 cut(s) 316, 433
CviQI GTAC 2 cut(s) 245, 337
DdeI CTNAG 1 cut(s) 241
DraIII CACNNNGTG 1 cut(s) 197
EaeI YGGCCR 1 cut(s) 202
Eco24I GRGCYC 1 cut(s) 27
Eco32I GATATC 1 cut(s) 551
EcoO109I RGGNCCY 1 cut(s) 24
EcoRII CCWGG 1 cut(s) 564
EcoRV GATATC 1 cut(s) 551
EcoT38I GRGCYC 1 cut(s) 27
FaeI CATG 2 cut(s) 319, 436
FaiI YATR 9 cut(s) 131, 317, 377, 390, 408, 434, 453, 594, 603
FatI CATG 2 cut(s) 315, 432
FblI GTMKAC 2 cut(s) 5, 98
Fnu4HI GCNGC 4 cut(s) 349, 381, 411, 633
FokI GGATG 1 cut(s) 613
FriOI GRGCYC 1 cut(s) 27
Fsp4HI GCNGC 4 cut(s) 349, 381, 411, 633
FspBI CTAG 1 cut(s) 429
GluI GCNGC 4 cut(s) 349, 381, 411, 633
GsuI CTGGAG 2 cut(s) 347, 489
HaeIII GGCC 3 cut(s) 25, 123, 204
HgaI GACGC 1 cut(s) 624
Hin1II CATG 2 cut(s) 319, 436
HinfI GANTC 6 cut(s) 77, 152, 239, 297, 471, 487
HphI GGTGA 1 cut(s) 554
Hpy166II GTNNAC 2 cut(s) 6, 99
Hpy188I TCNGA 2 cut(s) 157, 464
Hpy188III TCNNGA 1 cut(s) 506
Hpy8I GTNNAC 2 cut(s) 6, 99
Hpy99I CGWCG 1 cut(s) 53
HpyAV CCTTC 1 cut(s) 491
HpyCH4III ACNGT 4 cut(s) 10, 49, 195, 341
HpyCH4IV ACGT 1 cut(s) 69
HpyCH4V TGCA 4 cut(s) 30, 44, 351, 383
HpyF10VI GCNNNNNNNGC 2 cut(s) 50, 210
HpyF3I CTNAG 1 cut(s) 241
HpySE526I ACGT 1 cut(s) 69
Hsp92II CATG 2 cut(s) 319, 436
Lsp1109I GCAGC 4 cut(s) 335, 367, 397, 619
MabI ACCWGGT 1 cut(s) 564
MaeI CTAG 1 cut(s) 429
MaeII ACGT 1 cut(s) 69
MaeIII GTNAC 2 cut(s) 189, 568
MboII GAAGA 4 cut(s) 70, 260, 382, 437
MhlI GDGCHC 1 cut(s) 27
MlsI TGGCCA 1 cut(s) 204
MluCI AATT 1 cut(s) 262
MluNI TGGCCA 1 cut(s) 204
MlyI GAGTC 2 cut(s) 233, 480
MmeI TCCRAC 1 cut(s) 464
MnlI CCTC 2 cut(s) 240, 262
Mox20I TGGCCA 1 cut(s) 204
MscI TGGCCA 1 cut(s) 204
MseI TTAA 4 cut(s) 15, 516, 597, 640
MslI CAYNNNNRTG 2 cut(s) 35, 290
Msp20I TGGCCA 1 cut(s) 204
MspA1I CMGCKG 1 cut(s) 632
MspCI CTTAAG 1 cut(s) 515
MspR9I CCNGG 1 cut(s) 566
Mva1269I GAATGC 1 cut(s) 526
MvaI CCWGG 1 cut(s) 566
MwoI GCNNNNNNNGC 2 cut(s) 50, 210
NheI GCTAGC 1 cut(s) 428
NlaIII CATG 2 cut(s) 319, 436
NlaIV GGNNCC 1 cut(s) 25
NmeAIII GCCGAG 1 cut(s) 173
NmuCI GTSAC 2 cut(s) 189, 568
OliI CACNNNNGTG 1 cut(s) 290
PctI GAATGC 1 cut(s) 526
PfeI GAWTC 4 cut(s) 77, 152, 297, 487
PkrI GCNGC 4 cut(s) 350, 382, 412, 634
PleI GAGTC 2 cut(s) 233, 479
PpsI GAGTC 2 cut(s) 233, 479
Psp6I CCWGG 1 cut(s) 564
PspGI CCWGG 1 cut(s) 564
PspN4I GGNNCC 1 cut(s) 25
PspOMI GGGCCC 1 cut(s) 23
PspPI GGNCC 2 cut(s) 23, 24
RsaI GTAC 2 cut(s) 246, 338
RsaNI GTAC 2 cut(s) 245, 337
RseI CAYNNNNRTG 2 cut(s) 35, 290
SaqAI TTAA 4 cut(s) 15, 516, 597, 640
SatI GCNGC 4 cut(s) 349, 381, 411, 633
Sau96I GGNCC 2 cut(s) 23, 24
SchI GAGTC 2 cut(s) 233, 480
ScrFI CCNGG 1 cut(s) 566
SduI GDGCHC 1 cut(s) 27
SetI ASST 6 cut(s) 72, 184, 228, 254, 502, 570
SexAI ACCWGGT 1 cut(s) 564
SfcI CTRYAG 1 cut(s) 9
SmiMI CAYNNNNRTG 2 cut(s) 35, 290
SmlI CTYRAG 1 cut(s) 515
SmoI CTYRAG 1 cut(s) 515
Sse9I AATT 1 cut(s) 262
SsiI CCGC 2 cut(s) 524, 630
SspMI CTAG 1 cut(s) 429
StyD4I CCNGG 1 cut(s) 564
TaaI ACNGT 4 cut(s) 10, 49, 195, 341
TaiI ACGT 1 cut(s) 72
TaqI TCGA 1 cut(s) 300
TasI AATT 1 cut(s) 262
TfiI GAWTC 4 cut(s) 77, 152, 297, 487
Tru1I TTAA 4 cut(s) 15, 516, 597, 640
Tru9I TTAA 4 cut(s) 15, 516, 597, 640
TscAI CASTG 1 cut(s) 198
TseFI GTSAC 2 cut(s) 189, 568
TseI GCWGC 4 cut(s) 348, 380, 410, 632
Tsp45I GTSAC 2 cut(s) 189, 568
TspDTI ATGAA 3 cut(s) 90, 468, 615
TspGWI ACGGA 1 cut(s) 293
TspRI CASTG 1 cut(s) 198
Vha464I CTTAAG 1 cut(s) 515
XmiI GTMKAC 2 cut(s) 5, 98
XspI CTAG 1 cut(s) 429
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.