Rh5CG115000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0017943
Physical Location & Seq
Forward (+)
9518099 .. 9518491
393 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG115000.1

Sequence Viewer

Length: 393 bp
ATGTCTATTATAGTTATTGGGTCCCGGAGGATATCTGCAACCGTCGCAAAGAGAAACAAAGACGTTGATGATTCCATAGAGAAGTTTTTGTCAAATAAGAACTATGTTATGGGCCTGGACATAGAGTGGAGTTTAAGCCGAGATTCAGAAGGTGTAACAAGAAGCAAAATACCTATTTTGACACTCTGTGATGGGGATCATTGCCTTATTGTTCAGCTTCCTCACTTAGATTCAGCACCAACGTCACTCTGCAACTTTCTTCAACTACCGGATTACACATTTGTGGTATTTGACATTGCGAGAAGCATGGAGAGGCTGGAGAAAGAGTACGGTTTCGGTTGCAAGAACAGTGCTAATTTGAGGACTATGGCTGCAAAGTTTGACGACGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DNA_pol_A_exo1

Protein Analysis

130

Amino Acids

14.65

Weight (kDa)

5.39

Isoelectric Point (pI)

55.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017943)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G62320 AT5G48350
fragaria_vesca FvH4_3g05762
prunus_persica Prupe.3G008200_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0013771
rosa_laevigata RLG00000032045
rosa_roxburghii Rroxscaffold_1G00062870
rosa_rugosa Rorug05G0012800
rosa_samantha Rh5BG103200 Rh5BG103300 Rh5CG115000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 204
AdeI CACNNNGTG 1 cut(s) 188
AfaI GTAC 1 cut(s) 329
AgsI TTSAA 1 cut(s) 263
AjnI CCWGG 1 cut(s) 114
AleI CACNNNNGTG 1 cut(s) 281
AluBI AGCT 1 cut(s) 217
AluI AGCT 1 cut(s) 217
AlwI GGATC 1 cut(s) 204
AoxI GGCC 1 cut(s) 112
ApeKI GCWGC 1 cut(s) 371
AspS9I GGNCC 2 cut(s) 21, 112
AsuC2I CCSGG 1 cut(s) 25
AvaII GGWCC 1 cut(s) 21
BbvI GCAGC 1 cut(s) 358
BccI CCATC 1 cut(s) 185
BciT130I CCWGG 1 cut(s) 116
BcnI CCSGG 1 cut(s) 25
BisI GCNGC 1 cut(s) 372
BlsI GCNGC 1 cut(s) 373
Bme1390I CCNGG 2 cut(s) 25, 116
Bme18I GGWCC 1 cut(s) 21
BmgT120I GGNCC 2 cut(s) 21, 112
BmiI GGNNCC 2 cut(s) 22, 23
BmrFI CCNGG 2 cut(s) 25, 116
BpmI CTGGAG 1 cut(s) 338
BpuMI CCSGG 1 cut(s) 25
BsaBI GATNNNNATC 1 cut(s) 195
BsaWI WCCGGW 1 cut(s) 268
BsaXI ACNNNNNCTCC 2 cut(s) 311, 341
Bse3DI GCAATG 2 cut(s) 199, 294
Bse8I GATNNNNATC 1 cut(s) 195
BseBI CCWGG 1 cut(s) 116
BseJI GATNNNNATC 1 cut(s) 195
BseMI GCAATG 2 cut(s) 199, 294
BseXI GCAGC 1 cut(s) 358
BshFI GGCC 1 cut(s) 114
BsiSI CCGG 2 cut(s) 25, 269
BslFI GGGAC 1 cut(s) 7
BsmFI GGGAC 1 cut(s) 7
BsnI GGCC 1 cut(s) 114
Bsp143I GATC 1 cut(s) 196
BspANI GGCC 1 cut(s) 114
BspLI GGNNCC 2 cut(s) 22, 23
BspPI GGATC 1 cut(s) 204
BsrDI GCAATG 2 cut(s) 199, 294
BssMI GATC 1 cut(s) 196
Bst2UI CCWGG 1 cut(s) 116
Bst4CI ACNGT 3 cut(s) 43, 332, 350
BstDEI CTNAG 1 cut(s) 226
BstKTI GATC 1 cut(s) 199
BstMBI GATC 1 cut(s) 196
BstMWI GCNNNNNNNGC 1 cut(s) 44
BstNI CCWGG 1 cut(s) 116
BstSCI CCNGG 2 cut(s) 23, 114
BstV1I GCAGC 1 cut(s) 358
BsuRI GGCC 1 cut(s) 114
BtsIMutI CAGTG 1 cut(s) 355
Cfr13I GGNCC 2 cut(s) 21, 112
Csp6I GTAC 1 cut(s) 328
CviAII CATG 1 cut(s) 307
CviJI RGCY 5 cut(s) 114, 138, 217, 316, 371
CviKI_1 RGCY 5 cut(s) 114, 138, 217, 316, 371
CviQI GTAC 1 cut(s) 328
DdeI CTNAG 1 cut(s) 226
DpnI GATC 1 cut(s) 198
DpnII GATC 1 cut(s) 196
DraIII CACNNNGTG 1 cut(s) 188
Eco32I GATATC 1 cut(s) 33
Eco47I GGWCC 1 cut(s) 21
EcoO109I RGGNCCY 1 cut(s) 21
EcoRII CCWGG 1 cut(s) 114
EcoRV GATATC 1 cut(s) 33
FaeI CATG 1 cut(s) 310
FaiI YATR 7 cut(s) 11, 77, 105, 110, 122, 308, 368
FaqI GGGAC 1 cut(s) 7
FatI CATG 1 cut(s) 306
Fnu4HI GCNGC 1 cut(s) 372
Fsp4HI GCNGC 1 cut(s) 372
GluI GCNGC 1 cut(s) 372
GsuI CTGGAG 1 cut(s) 338
HaeIII GGCC 1 cut(s) 114
HapII CCGG 2 cut(s) 25, 269
Hin1II CATG 1 cut(s) 310
HinfI GANTC 3 cut(s) 71, 143, 230
HpaII CCGG 2 cut(s) 25, 269
Hpy188I TCNGA 1 cut(s) 148
Hpy99I CGWCG 2 cut(s) 47, 389
HpyAV CCTTC 1 cut(s) 143
HpyCH4III ACNGT 3 cut(s) 43, 332, 350
HpyCH4IV ACGT 2 cut(s) 63, 242
HpyCH4V TGCA 4 cut(s) 38, 252, 342, 374
HpyF10VI GCNNNNNNNGC 1 cut(s) 44
HpyF3I CTNAG 1 cut(s) 226
HpySE526I ACGT 2 cut(s) 63, 242
Hsp92II CATG 1 cut(s) 310
KflI GGGWCCC 1 cut(s) 21
Kzo9I GATC 1 cut(s) 196
LpnPI CCDG 5 cut(s) 38, 101, 128, 282, 302
Lsp1109I GCAGC 1 cut(s) 358
MaeII ACGT 2 cut(s) 63, 242
MaeIII GTNAC 2 cut(s) 154, 243
MalI GATC 1 cut(s) 198
MboI GATC 1 cut(s) 196
MboII GAAGA 1 cut(s) 251
MluCI AATT 1 cut(s) 355
MnlI CCTC 4 cut(s) 21, 231, 306, 354
MseI TTAA 1 cut(s) 134
MslI CAYNNNNRTG 1 cut(s) 281
MspI CCGG 2 cut(s) 25, 269
MspR9I CCNGG 2 cut(s) 25, 116
MvaI CCWGG 1 cut(s) 116
MwoI GCNNNNNNNGC 1 cut(s) 44
NciI CCSGG 1 cut(s) 25
NdeII GATC 1 cut(s) 196
NlaIII CATG 1 cut(s) 310
NlaIV GGNNCC 2 cut(s) 22, 23
NmeAIII GCCGAG 1 cut(s) 164
NmuCI GTSAC 1 cut(s) 243
OliI CACNNNNGTG 1 cut(s) 281
PfeI GAWTC 3 cut(s) 71, 143, 230
PfoI TCCNGGA 1 cut(s) 23
PkrI GCNGC 1 cut(s) 373
PpuMI RGGWCCY 1 cut(s) 21
Psp5II RGGWCCY 1 cut(s) 21
Psp6I CCWGG 1 cut(s) 114
PspGI CCWGG 1 cut(s) 114
PspN4I GGNNCC 2 cut(s) 22, 23
PspPI GGNCC 2 cut(s) 21, 112
PspPPI RGGWCCY 1 cut(s) 21
RsaI GTAC 1 cut(s) 329
RsaNI GTAC 1 cut(s) 328
RseI CAYNNNNRTG 1 cut(s) 281
SaqAI TTAA 1 cut(s) 134
SatI GCNGC 1 cut(s) 372
Sau3AI GATC 1 cut(s) 196
Sau96I GGNCC 2 cut(s) 21, 112
ScrFI CCNGG 2 cut(s) 25, 116
SetI ASST 5 cut(s) 66, 154, 175, 219, 245
SinI GGWCC 1 cut(s) 21
SmiMI CAYNNNNRTG 1 cut(s) 281
Sse9I AATT 1 cut(s) 355
StyD4I CCNGG 2 cut(s) 23, 114
TaaI ACNGT 3 cut(s) 43, 332, 350
TaiI ACGT 2 cut(s) 66, 245
TasI AATT 1 cut(s) 355
TfiI GAWTC 3 cut(s) 71, 143, 230
Tru1I TTAA 1 cut(s) 134
Tru9I TTAA 1 cut(s) 134
TscAI CASTG 1 cut(s) 355
TseFI GTSAC 1 cut(s) 243
TseI GCWGC 1 cut(s) 371
Tsp45I GTSAC 1 cut(s) 243
TspRI CASTG 1 cut(s) 355
VpaK11BI GGWCC 1 cut(s) 21
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.