AT5G48350

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0017943
Physical Location & Seq
Forward (+)
19593217 .. 19594441
1225 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G48350.1

Sequence Viewer

Length: 600 bp
ATGTCTTCTTCCATTGTTAAAATCGGAATAGATAGCATCAAAACAACGGTAACTGAAAAAGAGCGAGATATCAACCGTCTTGTGAAGACATTCTTGTCCAACAAAAACAACAGGAAGAAGATCATTGGTCTTGATACCGAACGGGTGCAAAAGGGAAGAAAGCTAAATAAGACCGTCTTGTTGCAGCTCTGCGATGGTGACAATTGTCTAATAGTACAACTTCCCGATGAAGATGAAGATGAAGGTGAAGGTGAAGATGATAATCTGCCACTCCCCCTCTTCAATTTTCTCAATCTACCCGAGTTCACATTTGTGGGCATTGGCATAAACAAGACTATGATGAGGCTTGAGAGTGAGTTTGGTTTGACCTGCAAGAATGTTGTTGAGATTGGACCCGCCACATGGAATCTGACCAATATGACGACCGATGTGAAATTTAGGATCAGTGCTATTGTTTCGACTGAGAGACCATCAAATGCCGTACTTGAGGACTGGGAGAAATTTGTTCTCAATAAGAACCAGATCAAGCTTGCAGCCTCCAATGCATACTTTGCTTTTGGCATTGGGAACATTTTGTTGGATGTTCAGATTTTAAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DNA_pol_A_exo1

Protein Analysis

199

Amino Acids

22.34

Weight (kDa)

5.08

Isoelectric Point (pI)

33.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017943)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G62320 AT5G48350
fragaria_vesca FvH4_3g05762
prunus_persica Prupe.3G008200_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0013771
rosa_laevigata RLG00000032045
rosa_roxburghii Rroxscaffold_1G00062870
rosa_rugosa Rorug05G0012800
rosa_samantha Rh5BG103200 Rh5BG103300 Rh5CG115000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 94
Acc36I ACCTGC 1 cut(s) 377
AciI CCGC 1 cut(s) 396
AclWI GGATC 1 cut(s) 449
AcsI RAATTY 2 cut(s) 434, 500
AfaI GTAC 2 cut(s) 216, 483
AfiI CCNNNNNNNGG 1 cut(s) 402
AgsI TTSAA 1 cut(s) 283
AjuI GAANNNNNNNTTGG 2 cut(s) 560, 592
AleI CACNNNNGTG 1 cut(s) 311
AluBI AGCT 3 cut(s) 163, 187, 529
AluI AGCT 3 cut(s) 163, 187, 529
Alw26I GTCTC 1 cut(s) 460
AlwI GGATC 1 cut(s) 449
Ama87I CYCGRG 1 cut(s) 299
ApeKI GCWGC 2 cut(s) 184, 533
ApoI RAATTY 2 cut(s) 434, 500
Asp700I GAANNNNTTC 1 cut(s) 89
AspS9I GGNCC 1 cut(s) 392
AsuHPI GGTGA 3 cut(s) 209, 257, 263
AvaI CYCGRG 1 cut(s) 299
AvaII GGWCC 1 cut(s) 392
BbsI GAAGAC 1 cut(s) 92
BbvI GCAGC 2 cut(s) 196, 545
BccI CCATC 2 cut(s) 188, 478
BceAI ACGGC 1 cut(s) 464
BcoDI GTCTC 1 cut(s) 460
BfuAI ACCTGC 1 cut(s) 377
BisI GCNGC 2 cut(s) 185, 534
BlsI GCNGC 2 cut(s) 186, 535
Bme18I GGWCC 1 cut(s) 392
BmeT110I CYCGRG 1 cut(s) 299
BmgT120I GGNCC 1 cut(s) 392
BmiI GGNNCC 1 cut(s) 394
BmrI ACTGGG 1 cut(s) 502
BmsI GCATC 1 cut(s) 45
BmuI ACTGGG 1 cut(s) 502
BoxI GACNNNNGTC 1 cut(s) 204
BpiI GAAGAC 1 cut(s) 92
BpuEI CTTGAG 2 cut(s) 368, 506
BsaBI GATNNNNATC 1 cut(s) 261
BsaI GGTCTC 1 cut(s) 460
Bsc4I CCNNNNNNNGG 1 cut(s) 402
Bse1I ACTGG 1 cut(s) 497
Bse8I GATNNNNATC 1 cut(s) 261
BseGI GGATG 1 cut(s) 586
BseJI GATNNNNATC 1 cut(s) 261
BseLI CCNNNNNNNGG 1 cut(s) 402
BseMII CTCAG 1 cut(s) 453
BseNI ACTGG 1 cut(s) 497
BseXI GCAGC 2 cut(s) 196, 545
Bsh1285I CGRYCG 1 cut(s) 426
BsiEI CGRYCG 1 cut(s) 426
BsiHKCI CYCGRG 1 cut(s) 299
BslI CCNNNNNNNGG 1 cut(s) 402
BsmAI GTCTC 1 cut(s) 460
Bso31I GGTCTC 1 cut(s) 460
BsoBI CYCGRG 1 cut(s) 299
Bsp143I GATC 3 cut(s) 120, 441, 522
BspACI CCGC 1 cut(s) 396
BspCNI CTCAG 1 cut(s) 454
BspLI GGNNCC 1 cut(s) 394
BspMI ACCTGC 1 cut(s) 377
BspPI GGATC 1 cut(s) 449
BspTNI GGTCTC 1 cut(s) 460
BsrI ACTGG 1 cut(s) 497
BssMI GATC 3 cut(s) 120, 441, 522
Bst4CI ACNGT 3 cut(s) 49, 77, 175
Bst6I CTCTTC 1 cut(s) 284
BstAPI GCANNNNNTGC 1 cut(s) 551
BstC8I GCNNGC 1 cut(s) 531
BstDEI CTNAG 1 cut(s) 462
BstF5I GGATG 1 cut(s) 586
BstKTI GATC 3 cut(s) 123, 444, 525
BstMAI GTCTC 1 cut(s) 460
BstMBI GATC 3 cut(s) 120, 441, 522
BstMCI CGRYCG 1 cut(s) 426
BstMWI GCNNNNNNNGC 2 cut(s) 542, 551
BstPAI GACNNNNGTC 1 cut(s) 204
BstV1I GCAGC 2 cut(s) 196, 545
BstV2I GAAGAC 1 cut(s) 92
BtgZI GCGATG 1 cut(s) 207
BtsCI GGATG 1 cut(s) 586
BtsIMutI CAGTG 1 cut(s) 451
BveI ACCTGC 1 cut(s) 377
Cac8I GCNNGC 1 cut(s) 531
Cfr13I GGNCC 1 cut(s) 392
Csp6I GTAC 2 cut(s) 215, 482
CviAII CATG 1 cut(s) 402
CviJI RGCY 5 cut(s) 163, 187, 346, 529, 536
CviKI_1 RGCY 5 cut(s) 163, 187, 346, 529, 536
CviQI GTAC 2 cut(s) 215, 482
DdeI CTNAG 1 cut(s) 462
DpnI GATC 3 cut(s) 122, 443, 524
DpnII GATC 3 cut(s) 120, 441, 522
DrdI GACNNNNNNGTC 1 cut(s) 94
DseDI GACNNNNNNGTC 1 cut(s) 94
Eam1104I CTCTTC 1 cut(s) 284
EarI CTCTTC 1 cut(s) 284
Eco31I GGTCTC 1 cut(s) 460
Eco32I GATATC 1 cut(s) 70
Eco47I GGWCC 1 cut(s) 392
Eco88I CYCGRG 1 cut(s) 299
EcoRV GATATC 1 cut(s) 70
EcoT22I ATGCAT 1 cut(s) 547
FaeI CATG 1 cut(s) 405
FaiI YATR 5 cut(s) 326, 338, 403, 419, 547
FalI AAGNNNNNCTT 4 cut(s) 77, 109, 161, 193
FatI CATG 1 cut(s) 401
FauI CCCGC 1 cut(s) 403
Fnu4HI GCNGC 2 cut(s) 185, 534
FokI GGATG 1 cut(s) 593
Fsp4HI GCNGC 2 cut(s) 185, 534
GluI GCNGC 2 cut(s) 185, 534
Hin1II CATG 1 cut(s) 405
HindIII AAGCTT 1 cut(s) 527
HinfI GANTC 1 cut(s) 406
HphI GGTGA 3 cut(s) 209, 257, 263
Hpy166II GTNNAC 1 cut(s) 306
Hpy188I TCNGA 3 cut(s) 26, 411, 588
Hpy188III TCNNGA 2 cut(s) 131, 224
Hpy8I GTNNAC 1 cut(s) 306
HpyAV CCTTC 2 cut(s) 236, 242
HpyCH4III ACNGT 3 cut(s) 49, 77, 175
HpyCH4V TGCA 5 cut(s) 148, 184, 372, 533, 545
HpyF10VI GCNNNNNNNGC 2 cut(s) 542, 551
HpyF3I CTNAG 1 cut(s) 462
Hsp92II CATG 1 cut(s) 405
Kzo9I GATC 3 cut(s) 120, 441, 522
LpnPI CCDG 4 cut(s) 97, 382, 478, 533
Lsp1109I GCAGC 2 cut(s) 196, 545
LweI GCATC 1 cut(s) 45
MaeIII GTNAC 2 cut(s) 49, 197
MalI GATC 3 cut(s) 122, 443, 524
MboI GATC 3 cut(s) 120, 441, 522
MboII GAAGA 8 cut(s) 97, 127, 130, 168, 242, 248, 266, 271
MfeI CAATTG 1 cut(s) 202
MluCI AATT 4 cut(s) 202, 283, 434, 500
MmeI TCCRAC 2 cut(s) 123, 558
MnlI CCTC 4 cut(s) 287, 336, 481, 547
Mph1103I ATGCAT 1 cut(s) 547
MroXI GAANNNNTTC 1 cut(s) 89
MseI TTAA 3 cut(s) 18, 593, 598
MslI CAYNNNNRTG 1 cut(s) 311
MunI CAATTG 1 cut(s) 202
MwoI GCNNNNNNNGC 2 cut(s) 542, 551
NdeII GATC 3 cut(s) 120, 441, 522
NlaIII CATG 1 cut(s) 405
NlaIV GGNNCC 1 cut(s) 394
NmuCI GTSAC 1 cut(s) 197
NsiI ATGCAT 1 cut(s) 547
OliI CACNNNNGTG 1 cut(s) 311
PdmI GAANNNNTTC 1 cut(s) 89
PfeI GAWTC 1 cut(s) 406
PkrI GCNGC 2 cut(s) 186, 535
PshAI GACNNNNGTC 1 cut(s) 204
PspN4I GGNNCC 1 cut(s) 394
PspPI GGNCC 1 cut(s) 392
RsaI GTAC 2 cut(s) 216, 483
RsaNI GTAC 2 cut(s) 215, 482
RseI CAYNNNNRTG 1 cut(s) 311
SaqAI TTAA 3 cut(s) 18, 593, 598
SatI GCNGC 2 cut(s) 185, 534
Sau3AI GATC 3 cut(s) 120, 441, 522
Sau96I GGNCC 1 cut(s) 392
SetI ASST 6 cut(s) 165, 189, 247, 253, 371, 531
SfaNI GCATC 1 cut(s) 45
SinI GGWCC 1 cut(s) 392
SmiMI CAYNNNNRTG 1 cut(s) 311
SmlI CTYRAG 2 cut(s) 347, 485
SmoI CTYRAG 2 cut(s) 347, 485
Sse9I AATT 4 cut(s) 202, 283, 434, 500
SsiI CCGC 1 cut(s) 396
TaaI ACNGT 3 cut(s) 49, 77, 175
TaqI TCGA 1 cut(s) 458
TaqII GACCGA 1 cut(s) 440
TasI AATT 4 cut(s) 202, 283, 434, 500
TatI WGTACW 1 cut(s) 214
TfiI GAWTC 1 cut(s) 406
Tru1I TTAA 3 cut(s) 18, 593, 598
Tru9I TTAA 3 cut(s) 18, 593, 598
TscAI CASTG 1 cut(s) 451
TseFI GTSAC 1 cut(s) 197
TseI GCWGC 2 cut(s) 184, 533
Tsp45I GTSAC 1 cut(s) 197
TspDTI ATGAA 3 cut(s) 243, 249, 255
TspRI CASTG 1 cut(s) 451
VpaK11BI GGWCC 1 cut(s) 392
XapI RAATTY 2 cut(s) 434, 500
XmnI GAANNNNTTC 1 cut(s) 89
Zsp2I ATGCAT 1 cut(s) 547
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.