Rroxscaffold_1G00062870

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0017943
Physical Location & Seq
Reverse (-)
84913701 .. 84914280
580 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00062870.1

Sequence Viewer

Length: 429 bp
ATGTCTATTGTAGTTATCGGGTACCGGAGGATATCTGCAACCGTCGCAAAGAGAAACAAAGACGTTAATGATTCCATAGAAAAGTTTTTGTCAAATAAGAACCATGTTATCGGCCTGGACATAGAGTGGAGCTTAAGCCGAGATTCAGAAGTACCAACGTCACTCTGCAATTTTCTTCAACTACCGGATTACGCATTTGTGGGATTTGACATTGTGAGAAGCATGGAGAGGCTGGAGAAAGAGTACGGTTTCGGTTGCAAGAACAGTGCTGATTTGAGGACTATGGCTGCAAAGTTTGACGACGAGCAGCCCTATGTTGCTTTCTGGGGGTCTGCTAAAATGGCTGAAGATCTTCGTTACGAGGTCAACCGCGCTACTATCAATGTCTATGCTTATCGTGGACTTGGAGCATCGTTGGGGTATTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DNA_pol_A_exo1

Protein Analysis

142

Amino Acids

16.16

Weight (kDa)

5.86

Isoelectric Point (pI)

46.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017943)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G62320 AT5G48350
fragaria_vesca FvH4_3g05762
prunus_persica Prupe.3G008200_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0013771
rosa_laevigata RLG00000032045
rosa_roxburghii Rroxscaffold_1G00062870
rosa_rugosa Rorug05G0012800
rosa_samantha Rh5BG103200 Rh5BG103300 Rh5CG115000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 21
AccB1I GGYRCC 1 cut(s) 21
AccII CGCG 1 cut(s) 372
AciI CCGC 1 cut(s) 370
AcuI CTGAAG 1 cut(s) 366
AfaI GTAC 3 cut(s) 23, 153, 245
AflII CTTAAG 1 cut(s) 133
AgsI TTSAA 1 cut(s) 179
AjnI CCWGG 1 cut(s) 114
AluBI AGCT 1 cut(s) 132
AluI AGCT 1 cut(s) 132
AoxI GGCC 1 cut(s) 112
ApeKI GCWGC 2 cut(s) 287, 307
Asp700I GAANNNNTTC 1 cut(s) 351
Asp718I GGTACC 1 cut(s) 21
AspLEI GCGC 1 cut(s) 374
BanI GGYRCC 1 cut(s) 21
BbvI GCAGC 2 cut(s) 274, 319
BciT130I CCWGG 1 cut(s) 116
BfrI CTTAAG 1 cut(s) 133
BglII AGATCT 1 cut(s) 349
BisI GCNGC 2 cut(s) 288, 308
BlsI GCNGC 2 cut(s) 289, 309
Bme1390I CCNGG 1 cut(s) 116
BmiI GGNNCC 1 cut(s) 23
BmrFI CCNGG 1 cut(s) 116
BmsI GCATC 1 cut(s) 419
BpmI CTGGAG 1 cut(s) 254
BsaWI WCCGGW 2 cut(s) 24, 184
BsaXI ACNNNNNCTCC 2 cut(s) 227, 257
BseBI CCWGG 1 cut(s) 116
BseXI GCAGC 2 cut(s) 274, 319
Bsh1236I CGCG 1 cut(s) 372
BshFI GGCC 1 cut(s) 114
BshNI GGYRCC 1 cut(s) 21
BsiSI CCGG 2 cut(s) 25, 185
BsnI GGCC 1 cut(s) 114
Bsp143I GATC 1 cut(s) 349
BspACI CCGC 1 cut(s) 370
BspANI GGCC 1 cut(s) 114
BspFNI CGCG 1 cut(s) 372
BspLI GGNNCC 1 cut(s) 23
BspT107I GGYRCC 1 cut(s) 21
BspTI CTTAAG 1 cut(s) 133
BssMI GATC 1 cut(s) 349
Bst2UI CCWGG 1 cut(s) 116
Bst4CI ACNGT 3 cut(s) 43, 248, 266
BstAFI CTTAAG 1 cut(s) 133
BstFNI CGCG 1 cut(s) 372
BstHHI GCGC 1 cut(s) 374
BstKTI GATC 1 cut(s) 352
BstMBI GATC 1 cut(s) 349
BstMWI GCNNNNNNNGC 2 cut(s) 44, 341
BstNI CCWGG 1 cut(s) 116
BstSCI CCNGG 1 cut(s) 114
BstUI CGCG 1 cut(s) 372
BstV1I GCAGC 2 cut(s) 274, 319
BstX2I RGATCY 1 cut(s) 349
BstYI RGATCY 1 cut(s) 349
BsuRI GGCC 1 cut(s) 114
BtsIMutI CAGTG 1 cut(s) 271
CfoI GCGC 1 cut(s) 374
Csp6I GTAC 3 cut(s) 22, 152, 244
CviAII CATG 2 cut(s) 104, 223
CviJI RGCY 7 cut(s) 114, 132, 138, 232, 287, 310, 344
CviKI_1 RGCY 7 cut(s) 114, 132, 138, 232, 287, 310, 344
CviQI GTAC 3 cut(s) 22, 152, 244
DpnI GATC 1 cut(s) 351
DpnII GATC 1 cut(s) 349
Eco32I GATATC 1 cut(s) 33
Eco57I CTGAAG 1 cut(s) 366
EcoRII CCWGG 1 cut(s) 114
EcoRV GATATC 1 cut(s) 33
FaeI CATG 2 cut(s) 107, 226
FaiI YATR 7 cut(s) 77, 105, 122, 224, 284, 315, 390
FatI CATG 2 cut(s) 103, 222
Fnu4HI GCNGC 2 cut(s) 288, 308
Fsp4HI GCNGC 2 cut(s) 288, 308
GlaI GCGC 1 cut(s) 373
GluI GCNGC 2 cut(s) 288, 308
GsuI CTGGAG 1 cut(s) 254
HaeIII GGCC 1 cut(s) 114
HapII CCGG 2 cut(s) 25, 185
HhaI GCGC 1 cut(s) 374
Hin1II CATG 2 cut(s) 107, 226
Hin6I GCGC 1 cut(s) 372
HinP1I GCGC 1 cut(s) 372
HincII GTYRAC 1 cut(s) 367
HindII GTYRAC 1 cut(s) 367
HinfI GANTC 2 cut(s) 71, 143
HpaII CCGG 2 cut(s) 25, 185
Hpy166II GTNNAC 2 cut(s) 367, 401
Hpy188I TCNGA 1 cut(s) 148
Hpy8I GTNNAC 2 cut(s) 367, 401
Hpy99I CGWCG 2 cut(s) 47, 305
HpyCH4III ACNGT 3 cut(s) 43, 248, 266
HpyCH4IV ACGT 2 cut(s) 63, 158
HpyCH4V TGCA 4 cut(s) 38, 168, 258, 290
HpyF10VI GCNNNNNNNGC 2 cut(s) 44, 341
HpySE526I ACGT 2 cut(s) 63, 158
Hsp92II CATG 2 cut(s) 107, 226
HspAI GCGC 1 cut(s) 372
KpnI GGTACC 1 cut(s) 25
Kzo9I GATC 1 cut(s) 349
LmnI GCTCC 2 cut(s) 129, 407
LpnPI CCDG 6 cut(s) 38, 101, 128, 198, 218, 310
Lsp1109I GCAGC 2 cut(s) 274, 319
LweI GCATC 1 cut(s) 419
MaeII ACGT 2 cut(s) 63, 158
MaeIII GTNAC 2 cut(s) 159, 356
MalI GATC 1 cut(s) 351
MboI GATC 1 cut(s) 349
MboII GAAGA 3 cut(s) 167, 344, 359
MflI RGATCY 1 cut(s) 349
MluCI AATT 1 cut(s) 169
MnlI CCTC 4 cut(s) 21, 222, 270, 355
MroXI GAANNNNTTC 1 cut(s) 351
MseI TTAA 2 cut(s) 66, 134
MspCI CTTAAG 1 cut(s) 133
MspI CCGG 2 cut(s) 25, 185
MspR9I CCNGG 1 cut(s) 116
MvaI CCWGG 1 cut(s) 116
MvnI CGCG 1 cut(s) 372
MwoI GCNNNNNNNGC 2 cut(s) 44, 341
NdeII GATC 1 cut(s) 349
NlaIII CATG 2 cut(s) 107, 226
NlaIV GGNNCC 1 cut(s) 23
NmeAIII GCCGAG 1 cut(s) 164
NmuCI GTSAC 1 cut(s) 159
PdmI GAANNNNTTC 1 cut(s) 351
PfeI GAWTC 2 cut(s) 71, 143
PkrI GCNGC 2 cut(s) 289, 309
Psp6I CCWGG 1 cut(s) 114
PspGI CCWGG 1 cut(s) 114
PspN4I GGNNCC 1 cut(s) 23
PsuI RGATCY 1 cut(s) 349
RsaI GTAC 3 cut(s) 23, 153, 245
RsaNI GTAC 3 cut(s) 22, 152, 244
SaqAI TTAA 2 cut(s) 66, 134
SatI GCNGC 2 cut(s) 288, 308
Sau3AI GATC 1 cut(s) 349
ScrFI CCNGG 1 cut(s) 116
SetI ASST 4 cut(s) 66, 134, 161, 366
SfaNI GCATC 1 cut(s) 419
SmlI CTYRAG 1 cut(s) 133
SmoI CTYRAG 1 cut(s) 133
Sse9I AATT 1 cut(s) 169
SsiI CCGC 1 cut(s) 370
StyD4I CCNGG 1 cut(s) 114
TaaI ACNGT 3 cut(s) 43, 248, 266
TaiI ACGT 2 cut(s) 66, 161
TasI AATT 1 cut(s) 169
TfiI GAWTC 2 cut(s) 71, 143
Tru1I TTAA 2 cut(s) 66, 134
Tru9I TTAA 2 cut(s) 66, 134
TscAI CASTG 1 cut(s) 271
TseFI GTSAC 1 cut(s) 159
TseI GCWGC 2 cut(s) 287, 307
Tsp45I GTSAC 1 cut(s) 159
TspRI CASTG 1 cut(s) 271
Vha464I CTTAAG 1 cut(s) 133
XmnI GAANNNNTTC 1 cut(s) 351
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.