Rh5BG103300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0017943
Physical Location & Seq
Forward (+)
9433909 .. 9434304
396 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG103300.1

Sequence Viewer

Length: 396 bp
ATGGGGATCATTGCCTTATTGTTCAGCTTCCTCACTTGGATTCAGTACCAACGTCAATTTGCAATTTTCTTCAACTACGTACCGGATTACGCATTTGTGGGATTTGACATTGTGAGAAGCATGGAGAGGCTGCAGAAAGAGTACTGTTTCGGTTGCAAGAACTGTGCTGATTTGAGGACTATGGCTGCAAAGTTTGACGACGAGCAGCCCTATGTTGCTTTCTGGGGGTCTGCTAAAATGGCTGAAGATCTTTGTTACGAGGGTAAAGTTGATAAACCCAAGAGTGCAGTTTTTGACGACTGGGGTAATAGATATCTCAACGAAAACCAGGTCAACCGCGCTACTATCAATTTCTATGCTTATCGTGGACTTGGAGCATCGTTGGGGTATTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DNA_pol_A_exo1

Protein Analysis

131

Amino Acids

15.29

Weight (kDa)

5.39

Isoelectric Point (pI)

19.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017943)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G62320 AT5G48350
fragaria_vesca FvH4_3g05762
prunus_persica Prupe.3G008200_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0013771
rosa_laevigata RLG00000032045
rosa_roxburghii Rroxscaffold_1G00062870
rosa_rugosa Rorug05G0012800
rosa_samantha Rh5BG103200 Rh5BG103300 Rh5CG115000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 339
AciI CCGC 1 cut(s) 337
AclWI GGATC 1 cut(s) 14
AcuI CTGAAG 1 cut(s) 264
AfaI GTAC 3 cut(s) 47, 81, 143
AgsI TTSAA 1 cut(s) 73
AjnI CCWGG 1 cut(s) 327
AluBI AGCT 1 cut(s) 27
AluI AGCT 1 cut(s) 27
AlwI GGATC 1 cut(s) 14
ApeKI GCWGC 3 cut(s) 130, 185, 205
ArsI GACNNNNNNTTYG 2 cut(s) 315, 347
AspLEI GCGC 1 cut(s) 341
BbvI GCAGC 3 cut(s) 117, 172, 217
BciT130I CCWGG 1 cut(s) 329
BfmI CTRYAG 1 cut(s) 131
BglII AGATCT 1 cut(s) 247
BisI GCNGC 3 cut(s) 131, 186, 206
BlsI GCNGC 3 cut(s) 132, 187, 207
BmcAI AGTACT 1 cut(s) 143
Bme1390I CCNGG 1 cut(s) 329
BmrFI CCNGG 1 cut(s) 329
BmrI ACTGGG 1 cut(s) 310
BmsI GCATC 1 cut(s) 386
BmuI ACTGGG 1 cut(s) 310
BsaAI YACGTR 1 cut(s) 79
BsaWI WCCGGW 1 cut(s) 82
Bse1I ACTGG 1 cut(s) 305
Bse3DI GCAATG 1 cut(s) 9
BseBI CCWGG 1 cut(s) 329
BseMI GCAATG 1 cut(s) 9
BseNI ACTGG 1 cut(s) 305
BseXI GCAGC 3 cut(s) 117, 172, 217
BsgI GTGCAG 1 cut(s) 306
Bsh1236I CGCG 1 cut(s) 339
BsiSI CCGG 1 cut(s) 83
Bsp143I GATC 2 cut(s) 6, 247
BspACI CCGC 1 cut(s) 337
BspFNI CGCG 1 cut(s) 339
BspMAI CTGCAG 1 cut(s) 135
BspPI GGATC 1 cut(s) 14
BsrDI GCAATG 1 cut(s) 9
BsrI ACTGG 1 cut(s) 305
BssMI GATC 2 cut(s) 6, 247
Bst2UI CCWGG 1 cut(s) 329
Bst4CI ACNGT 2 cut(s) 146, 164
BstBAI YACGTR 1 cut(s) 79
BstFNI CGCG 1 cut(s) 339
BstHHI GCGC 1 cut(s) 341
BstKTI GATC 2 cut(s) 9, 250
BstMBI GATC 2 cut(s) 6, 247
BstMWI GCNNNNNNNGC 1 cut(s) 239
BstNI CCWGG 1 cut(s) 329
BstSCI CCNGG 1 cut(s) 327
BstSFI CTRYAG 1 cut(s) 131
BstSNI TACGTA 1 cut(s) 79
BstUI CGCG 1 cut(s) 339
BstV1I GCAGC 3 cut(s) 117, 172, 217
BstX2I RGATCY 1 cut(s) 247
BstYI RGATCY 1 cut(s) 247
CfoI GCGC 1 cut(s) 341
CsiI ACCWGGT 1 cut(s) 327
Csp6I GTAC 3 cut(s) 46, 80, 142
CviAII CATG 1 cut(s) 121
CviJI RGCY 5 cut(s) 27, 130, 185, 208, 242
CviKI_1 RGCY 5 cut(s) 27, 130, 185, 208, 242
CviQI GTAC 3 cut(s) 46, 80, 142
DpnI GATC 2 cut(s) 8, 249
DpnII GATC 2 cut(s) 6, 247
Eco105I TACGTA 1 cut(s) 79
Eco32I GATATC 1 cut(s) 314
Eco57I CTGAAG 1 cut(s) 264
EcoRII CCWGG 1 cut(s) 327
EcoRV GATATC 1 cut(s) 314
FaeI CATG 1 cut(s) 124
FaiI YATR 4 cut(s) 122, 182, 213, 357
FatI CATG 1 cut(s) 120
Fnu4HI GCNGC 3 cut(s) 131, 186, 206
Fsp4HI GCNGC 3 cut(s) 131, 186, 206
GlaI GCGC 1 cut(s) 340
GluI GCNGC 3 cut(s) 131, 186, 206
HapII CCGG 1 cut(s) 83
HhaI GCGC 1 cut(s) 341
Hin1II CATG 1 cut(s) 124
Hin6I GCGC 1 cut(s) 339
HinP1I GCGC 1 cut(s) 339
HincII GTYRAC 1 cut(s) 334
HindII GTYRAC 1 cut(s) 334
HinfI GANTC 1 cut(s) 40
HpaII CCGG 1 cut(s) 83
Hpy166II GTNNAC 2 cut(s) 334, 368
Hpy8I GTNNAC 2 cut(s) 334, 368
Hpy99I CGWCG 1 cut(s) 203
HpyCH4III ACNGT 2 cut(s) 146, 164
HpyCH4IV ACGT 2 cut(s) 52, 78
HpyCH4V TGCA 5 cut(s) 62, 133, 156, 188, 287
HpyF10VI GCNNNNNNNGC 1 cut(s) 239
HpySE526I ACGT 2 cut(s) 52, 78
Hsp92II CATG 1 cut(s) 124
HspAI GCGC 1 cut(s) 339
Kzo9I GATC 2 cut(s) 6, 247
LmnI GCTCC 1 cut(s) 374
LpnPI CCDG 5 cut(s) 96, 208, 286, 314, 341
Lsp1109I GCAGC 3 cut(s) 117, 172, 217
LweI GCATC 1 cut(s) 386
MabI ACCWGGT 1 cut(s) 327
MaeII ACGT 2 cut(s) 52, 78
MaeIII GTNAC 1 cut(s) 254
MalI GATC 2 cut(s) 8, 249
MboI GATC 2 cut(s) 6, 247
MboII GAAGA 2 cut(s) 61, 257
MflI RGATCY 1 cut(s) 247
MluCI AATT 3 cut(s) 56, 63, 349
MnlI CCTC 4 cut(s) 41, 120, 168, 253
MspI CCGG 1 cut(s) 83
MspR9I CCNGG 1 cut(s) 329
MvaI CCWGG 1 cut(s) 329
MvnI CGCG 1 cut(s) 339
MwoI GCNNNNNNNGC 1 cut(s) 239
NdeII GATC 2 cut(s) 6, 247
NlaIII CATG 1 cut(s) 124
PfeI GAWTC 1 cut(s) 40
PkrI GCNGC 3 cut(s) 132, 187, 207
Ppu21I YACGTR 1 cut(s) 79
Psp6I CCWGG 1 cut(s) 327
PspGI CCWGG 1 cut(s) 327
PstI CTGCAG 1 cut(s) 135
PsuI RGATCY 1 cut(s) 247
RsaI GTAC 3 cut(s) 47, 81, 143
RsaNI GTAC 3 cut(s) 46, 80, 142
SatI GCNGC 3 cut(s) 131, 186, 206
Sau3AI GATC 2 cut(s) 6, 247
ScaI AGTACT 1 cut(s) 143
ScrFI CCNGG 1 cut(s) 329
SetI ASST 4 cut(s) 29, 55, 81, 333
SexAI ACCWGGT 1 cut(s) 327
SfaNI GCATC 1 cut(s) 386
SfcI CTRYAG 1 cut(s) 131
SnaBI TACGTA 1 cut(s) 79
Sse9I AATT 3 cut(s) 56, 63, 349
SsiI CCGC 1 cut(s) 337
StyD4I CCNGG 1 cut(s) 327
TaaI ACNGT 2 cut(s) 146, 164
TaiI ACGT 2 cut(s) 55, 81
TasI AATT 3 cut(s) 56, 63, 349
TatI WGTACW 1 cut(s) 141
TfiI GAWTC 1 cut(s) 40
TseI GCWGC 3 cut(s) 130, 185, 205
ZrmI AGTACT 1 cut(s) 143
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.