AT3G62810

Belongs to the complex I LYR family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0011003
Physical Location & Seq
Forward (+)
23227622 .. 23229027
1406 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G62810.1

Sequence Viewer

Length: 321 bp
ATGGTGACCGGAGAAGCGTTGATCGCGTACAGAGCACTGCTCAGGGCAACAAAGAAATCATTCGCCGGAGATACCGAGATGCTAAAAGCTTCGGCGTCCGAGATCCGTAAGAAATTCGAAGAGAATCGCCTCGTGGCTTCTAACTCCGACATCACTCGCCTTCTAGAAGAGGCGCGTGAAGCGACGCAGTTCATTTCCACCATGATCGTCCAGGCTAAACTCAACGAACGCGGCGGATATGAGATGAAAGCAAGTCAGGAACACGCGGGAGCTACTTTGGAGCTTCCATCAGAGGAGATGCTTCGGAAAAAATCTGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Complex1_LYR

Protein Analysis

106

Amino Acids

11.82

Weight (kDa)

7.99

Isoelectric Point (pI)

25.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Complex1_LYR PF05347 5 - 62 4.7e-10 Complex 1 protein (LYR family)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011003)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G62810 AT3G62810
fragaria_vesca FvH4_2g25692 FvH4_3g17380
malus_domestica MD03G1287900.v1.1 MD11G1310400.v1.1
prunus_persica Prupe.8G261100_v2.0.a1
pyrus_communis pycom16g13370
rosa_chinensis RchiOBHm_Chr6g0293971
rosa_laevigata RLG00000011911
rosa_multiflora Rmu_sc0005126.1_g000008 Rmu_sc0005647.1_g000004
rosa_roxburghii Rroxscaffold_7G00173780
rosa_rugosa Rorug05G0037400 Rorug06G0239600
rosa_samantha Rh6AG352700 Rh6BG359700 Rh6CG367000 Rh6DG353400
rosa_wichuraiana Rw6G030730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 4 cut(s) 26, 175, 231, 266
AciI CCGC 3 cut(s) 231, 234, 266
AclWI GGATC 1 cut(s) 97
AcsI RAATTY 1 cut(s) 113
AcyI GRCGYC 1 cut(s) 95
AfaI GTAC 1 cut(s) 29
AjnI CCWGG 1 cut(s) 210
AluBI AGCT 3 cut(s) 89, 272, 283
AluI AGCT 3 cut(s) 89, 272, 283
Alw21I GWGCWC 1 cut(s) 37
AlwI GGATC 1 cut(s) 97
ApoI RAATTY 1 cut(s) 113
Asp700I GAANNNNTTC 1 cut(s) 59
AspLEI GCGC 1 cut(s) 175
AsuHPI GGTGA 1 cut(s) 16
AsuII TTCGAA 1 cut(s) 117
BauI CACGAG 1 cut(s) 131
Bbv12I GWGCWC 1 cut(s) 37
BccI CCATC 1 cut(s) 295
BciT130I CCWGG 1 cut(s) 212
BfaI CTAG 1 cut(s) 164
BisI GCNGC 1 cut(s) 232
BlsI GCNGC 1 cut(s) 233
Bme1390I CCNGG 1 cut(s) 212
BmrFI CCNGG 1 cut(s) 212
BmsI GCATC 2 cut(s) 69, 288
BplI GAGNNNNNCTC 2 cut(s) 24, 56
Bpu10I CCTNAGC 1 cut(s) 41
Bpu14I TTCGAA 1 cut(s) 117
BsaHI GRCGYC 1 cut(s) 95
BsaWI WCCGGW 1 cut(s) 8
BseBI CCWGG 1 cut(s) 212
BseMII CTCAG 1 cut(s) 55
BseRI GAGGAG 1 cut(s) 308
Bsh1236I CGCG 4 cut(s) 26, 175, 231, 266
BsiHKAI GWGCWC 1 cut(s) 37
BsiSI CCGG 2 cut(s) 9, 66
Bsp119I TTCGAA 1 cut(s) 117
Bsp1286I GDGCHC 1 cut(s) 37
Bsp143I GATC 3 cut(s) 21, 102, 204
BspACI CCGC 3 cut(s) 231, 234, 266
BspCNI CTCAG 1 cut(s) 54
BspFNI CGCG 4 cut(s) 26, 175, 231, 266
BspPI GGATC 1 cut(s) 97
BspT104I TTCGAA 1 cut(s) 117
BssMI GATC 3 cut(s) 21, 102, 204
BssNI GRCGYC 1 cut(s) 95
BssSI CACGAG 1 cut(s) 131
Bst2BI CACGAG 1 cut(s) 131
Bst2UI CCWGG 1 cut(s) 212
Bst6I CTCTTC 2 cut(s) 114, 162
BstACI GRCGYC 1 cut(s) 95
BstBI TTCGAA 1 cut(s) 117
BstDEI CTNAG 1 cut(s) 41
BstEII GGTNACC 1 cut(s) 4
BstFNI CGCG 4 cut(s) 26, 175, 231, 266
BstHHI GCGC 1 cut(s) 175
BstKTI GATC 3 cut(s) 24, 105, 207
BstMBI GATC 3 cut(s) 21, 102, 204
BstMWI GCNNNNNNNGC 3 cut(s) 23, 32, 179
BstNI CCWGG 1 cut(s) 212
BstPI GGTNACC 1 cut(s) 4
BstSCI CCNGG 1 cut(s) 210
BstUI CGCG 4 cut(s) 26, 175, 231, 266
BstX2I RGATCY 1 cut(s) 102
BstYI RGATCY 1 cut(s) 102
BtsI GCAGTG 1 cut(s) 35
BtsIMutI CAGTG 1 cut(s) 35
CfoI GCGC 1 cut(s) 175
CseI GACGC 2 cut(s) 84, 193
Csp6I GTAC 1 cut(s) 28
CviAII CATG 1 cut(s) 202
CviJI RGCY 5 cut(s) 89, 137, 215, 272, 283
CviKI_1 RGCY 5 cut(s) 89, 137, 215, 272, 283
CviQI GTAC 1 cut(s) 28
DdeI CTNAG 1 cut(s) 41
DpnI GATC 3 cut(s) 23, 104, 206
DpnII GATC 3 cut(s) 21, 102, 204
Eam1104I CTCTTC 2 cut(s) 114, 162
EarI CTCTTC 2 cut(s) 114, 162
EciI GGCGGA 1 cut(s) 249
Eco91I GGTNACC 1 cut(s) 4
EcoO65I GGTNACC 1 cut(s) 4
EcoRII CCWGG 1 cut(s) 210
FaeI CATG 1 cut(s) 205
FaiI YATR 3 cut(s) 203, 240, 319
FatI CATG 1 cut(s) 201
FauI CCCGC 1 cut(s) 259
Fnu4HI GCNGC 1 cut(s) 232
Fsp4HI GCNGC 1 cut(s) 232
FspBI CTAG 1 cut(s) 164
GlaI GCGC 1 cut(s) 174
GluI GCNGC 1 cut(s) 232
HapII CCGG 2 cut(s) 9, 66
HgaI GACGC 2 cut(s) 84, 193
HhaI GCGC 1 cut(s) 175
Hin1I GRCGYC 1 cut(s) 95
Hin1II CATG 1 cut(s) 205
Hin6I GCGC 1 cut(s) 173
HinP1I GCGC 1 cut(s) 173
HindIII AAGCTT 1 cut(s) 87
HinfI GANTC 1 cut(s) 124
HpaII CCGG 2 cut(s) 9, 66
HphI GGTGA 1 cut(s) 16
Hpy188I TCNGA 4 cut(s) 100, 148, 292, 306
Hpy188III TCNNGA 2 cut(s) 164, 257
Hpy99I CGWCG 1 cut(s) 187
HpyAV CCTTC 1 cut(s) 170
HpyF10VI GCNNNNNNNGC 3 cut(s) 23, 32, 179
HpyF3I CTNAG 1 cut(s) 41
Hsp92I GRCGYC 1 cut(s) 95
Hsp92II CATG 1 cut(s) 205
HspAI GCGC 1 cut(s) 173
Kzo9I GATC 3 cut(s) 21, 102, 204
LmnI GCTCC 2 cut(s) 269, 280
LpnPI CCDG 6 cut(s) 22, 28, 79, 197, 224, 242
LweI GCATC 2 cut(s) 69, 288
MaeI CTAG 1 cut(s) 164
MaeIII GTNAC 1 cut(s) 4
MalI GATC 3 cut(s) 23, 104, 206
MboI GATC 3 cut(s) 21, 102, 204
MboII GAAGA 2 cut(s) 131, 179
MflI RGATCY 1 cut(s) 102
MhlI GDGCHC 1 cut(s) 37
MluCI AATT 1 cut(s) 113
MmeI TCCRAC 1 cut(s) 171
MnlI CCTC 3 cut(s) 140, 163, 286
MroXI GAANNNNTTC 1 cut(s) 59
MspI CCGG 2 cut(s) 9, 66
MspR9I CCNGG 1 cut(s) 212
MvaI CCWGG 1 cut(s) 212
MvnI CGCG 4 cut(s) 26, 175, 231, 266
MwoI GCNNNNNNNGC 3 cut(s) 23, 32, 179
NdeII GATC 3 cut(s) 21, 102, 204
NlaIII CATG 1 cut(s) 205
NmuCI GTSAC 1 cut(s) 4
NspV TTCGAA 1 cut(s) 117
PdmI GAANNNNTTC 1 cut(s) 59
PfeI GAWTC 1 cut(s) 124
PkrI GCNGC 1 cut(s) 233
Psp6I CCWGG 1 cut(s) 210
PspEI GGTNACC 1 cut(s) 4
PspGI CCWGG 1 cut(s) 210
PsuI RGATCY 1 cut(s) 102
RsaI GTAC 1 cut(s) 29
RsaNI GTAC 1 cut(s) 28
SatI GCNGC 1 cut(s) 232
Sau3AI GATC 3 cut(s) 21, 102, 204
ScrFI CCNGG 1 cut(s) 212
SduI GDGCHC 1 cut(s) 37
SetI ASST 3 cut(s) 91, 274, 285
SfaNI GCATC 2 cut(s) 69, 288
SfuI TTCGAA 1 cut(s) 117
Sse9I AATT 1 cut(s) 113
SsiI CCGC 3 cut(s) 231, 234, 266
SspMI CTAG 1 cut(s) 164
StyD4I CCNGG 1 cut(s) 210
TaqI TCGA 1 cut(s) 117
TasI AATT 1 cut(s) 113
TauI GCSGC 1 cut(s) 234
TfiI GAWTC 1 cut(s) 124
TscAI CASTG 1 cut(s) 42
TseFI GTSAC 1 cut(s) 4
Tsp45I GTSAC 1 cut(s) 4
TspDTI ATGAA 2 cut(s) 181, 260
TspGWI ACGGA 1 cut(s) 95
TspRI CASTG 1 cut(s) 42
XapI RAATTY 1 cut(s) 113
XbaI TCTAGA 1 cut(s) 163
XmnI GAANNNNTTC 1 cut(s) 59
XspI CTAG 1 cut(s) 164
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.