FvH4_2g25692

Belongs to the complex I LYR family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0011003
Physical Location & Seq
Forward (+)
20768752 .. 20769151
400 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g25692.t1

Sequence Viewer

Length: 315 bp
ATGGCGAGAGCAGAAGCACTAAAGGCCTACAGATCGCTGCTCAGAGCGACTCGGAAGTCGTTTGCCGGAGATACGGTGATGCTCAAGGGTTCGGCGGCGGAGGTCCGACAGAAATTCGAAGAGAATAGGGGAGTGACGTCAGAGGCGGAGATTGAAAGACTCCTCGGCGAGGCTCGCGAGGCCTCCAGCTTCATCTCCACAATGATCGTCCAGGCCAAGCTCAATTCCCGCGGCGGCTACGAAGTGAAGCCGGAAAAGGACCATGCCGGAGCTACGCTTGAGATTCCTTCTGAAGAAATCCTTCCCAAATCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Complex1_LYR

Protein Analysis

105

Amino Acids

11.41

Weight (kDa)

8.01

Isoelectric Point (pI)

36.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Complex1_LYR PF05347 5 - 61 2.4e-12 Complex 1 protein (LYR family)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011003)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G62810 AT3G62810
fragaria_vesca FvH4_2g25692 FvH4_3g17380
malus_domestica MD03G1287900.v1.1 MD11G1310400.v1.1
prunus_persica Prupe.8G261100_v2.0.a1
pyrus_communis pycom16g13370
rosa_chinensis RchiOBHm_Chr6g0293971
rosa_laevigata RLG00000011911
rosa_multiflora Rmu_sc0005126.1_g000008 Rmu_sc0005647.1_g000004
rosa_roxburghii Rroxscaffold_7G00173780
rosa_rugosa Rorug05G0037400 Rorug06G0239600
rosa_samantha Rh6AG352700 Rh6BG359700 Rh6CG367000 Rh6DG353400
rosa_wichuraiana Rw6G030730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 55
AatII GACGTC 1 cut(s) 140
AccII CGCG 2 cut(s) 177, 231
AciI CCGC 6 cut(s) 95, 98, 146, 229, 231, 234
AcsI RAATTY 1 cut(s) 113
AcuI CTGAAG 1 cut(s) 312
AcyI GRCGYC 1 cut(s) 137
AfiI CCNNNNNNNGG 1 cut(s) 169
AgsI TTSAA 1 cut(s) 155
AjnI CCWGG 1 cut(s) 210
AluBI AGCT 3 cut(s) 189, 220, 272
AluI AGCT 3 cut(s) 189, 220, 272
AoxI GGCC 3 cut(s) 24, 180, 213
ApeKI GCWGC 1 cut(s) 37
ApoI RAATTY 1 cut(s) 113
Asp700I GAANNNNTTC 1 cut(s) 300
AspS9I GGNCC 2 cut(s) 103, 259
AsuHPI GGTGA 1 cut(s) 88
AsuII TTCGAA 1 cut(s) 117
AvaII GGWCC 2 cut(s) 103, 259
BbvI GCAGC 1 cut(s) 24
BciT130I CCWGG 1 cut(s) 212
BfmI CTRYAG 1 cut(s) 28
BisI GCNGC 4 cut(s) 38, 96, 232, 235
BlsI GCNGC 4 cut(s) 39, 97, 233, 236
Bme1390I CCNGG 1 cut(s) 212
Bme18I GGWCC 2 cut(s) 103, 259
BmgT120I GGNCC 2 cut(s) 103, 259
BmrFI CCNGG 1 cut(s) 212
BmsI GCATC 1 cut(s) 69
BpmI CTGGAG 1 cut(s) 169
Bpu14I TTCGAA 1 cut(s) 117
BpuEI CTTGAG 2 cut(s) 68, 299
BsaHI GRCGYC 1 cut(s) 137
BsaJI CCNNGG 2 cut(s) 163, 229
BsaXI ACNNNNNCTCC 2 cut(s) 60, 90
Bsc4I CCNNNNNNNGG 1 cut(s) 169
BseBI CCWGG 1 cut(s) 212
BseDI CCNNGG 2 cut(s) 163, 229
BseLI CCNNNNNNNGG 1 cut(s) 169
BseMII CTCAG 1 cut(s) 55
BseRI GAGGAG 1 cut(s) 152
BseXI GCAGC 1 cut(s) 24
Bsh1236I CGCG 2 cut(s) 177, 231
BshFI GGCC 3 cut(s) 26, 182, 215
BsiSI CCGG 3 cut(s) 66, 251, 267
BslI CCNNNNNNNGG 1 cut(s) 169
BsnI GGCC 3 cut(s) 26, 182, 215
Bsp119I TTCGAA 1 cut(s) 117
Bsp143I GATC 2 cut(s) 32, 204
Bsp68I TCGCGA 1 cut(s) 177
BspACI CCGC 6 cut(s) 95, 98, 146, 229, 231, 234
BspANI GGCC 3 cut(s) 26, 182, 215
BspCNI CTCAG 1 cut(s) 54
BspFNI CGCG 2 cut(s) 177, 231
BspT104I TTCGAA 1 cut(s) 117
BssECI CCNNGG 2 cut(s) 163, 229
BssMI GATC 2 cut(s) 32, 204
BssNI GRCGYC 1 cut(s) 137
Bst2UI CCWGG 1 cut(s) 212
Bst4CI ACNGT 1 cut(s) 76
Bst6I CTCTTC 1 cut(s) 114
BstACI GRCGYC 1 cut(s) 137
BstBI TTCGAA 1 cut(s) 117
BstC8I GCNNGC 1 cut(s) 175
BstDEI CTNAG 2 cut(s) 41, 312
BstDSI CCRYGG 1 cut(s) 229
BstENI CCTNNNNNAGG 1 cut(s) 167
BstFNI CGCG 2 cut(s) 177, 231
BstKTI GATC 2 cut(s) 35, 207
BstMBI GATC 2 cut(s) 32, 204
BstMWI GCNNNNNNNGC 3 cut(s) 23, 174, 179
BstNI CCWGG 1 cut(s) 212
BstSCI CCNGG 1 cut(s) 210
BstSFI CTRYAG 1 cut(s) 28
BstUI CGCG 2 cut(s) 177, 231
BstV1I GCAGC 1 cut(s) 24
BsuRI GGCC 3 cut(s) 26, 182, 215
BtgI CCRYGG 1 cut(s) 229
BtuMI TCGCGA 1 cut(s) 177
Cac8I GCNNGC 1 cut(s) 175
Cfr13I GGNCC 2 cut(s) 103, 259
Cfr42I CCGCGG 1 cut(s) 232
CviAII CATG 1 cut(s) 263
CviJI RGCY 9 cut(s) 26, 173, 182, 189, 215, 220, 237, 250, 272
CviKI_1 RGCY 9 cut(s) 26, 173, 182, 189, 215, 220, 237, 250, 272
DdeI CTNAG 2 cut(s) 41, 312
DpnI GATC 2 cut(s) 34, 206
DpnII GATC 2 cut(s) 32, 204
DrdI GACNNNNNNGTC 1 cut(s) 55
DseDI GACNNNNNNGTC 1 cut(s) 55
Eam1104I CTCTTC 1 cut(s) 114
EarI CTCTTC 1 cut(s) 114
EciI GGCGGA 2 cut(s) 113, 161
Eco147I AGGCCT 2 cut(s) 26, 182
Eco47I GGWCC 2 cut(s) 103, 259
Eco57I CTGAAG 1 cut(s) 312
EcoNI CCTNNNNNAGG 1 cut(s) 167
EcoRII CCWGG 1 cut(s) 210
FaeI CATG 1 cut(s) 266
FaiI YATR 1 cut(s) 264
FalI AAGNNNNNCTT 1 cut(s) 285
FatI CATG 1 cut(s) 262
FauI CCCGC 1 cut(s) 236
Fnu4HI GCNGC 4 cut(s) 38, 96, 232, 235
Fsp4HI GCNGC 4 cut(s) 38, 96, 232, 235
GluI GCNGC 4 cut(s) 38, 96, 232, 235
GsuI CTGGAG 1 cut(s) 169
HaeIII GGCC 3 cut(s) 26, 182, 215
HapII CCGG 3 cut(s) 66, 251, 267
Hin1I GRCGYC 1 cut(s) 137
Hin1II CATG 1 cut(s) 266
HinfI GANTC 3 cut(s) 49, 159, 283
HpaII CCGG 3 cut(s) 66, 251, 267
HphI GGTGA 1 cut(s) 88
Hpy188I TCNGA 5 cut(s) 44, 54, 107, 142, 292
Hpy188III TCNNGA 1 cut(s) 176
HpyAV CCTTC 2 cut(s) 297, 311
HpyCH4III ACNGT 1 cut(s) 76
HpyCH4IV ACGT 1 cut(s) 137
HpyF10VI GCNNNNNNNGC 3 cut(s) 23, 174, 179
HpyF3I CTNAG 2 cut(s) 41, 312
HpySE526I ACGT 1 cut(s) 137
Hsp92I GRCGYC 1 cut(s) 137
Hsp92II CATG 1 cut(s) 266
KspI CCGCGG 1 cut(s) 232
Kzo9I GATC 2 cut(s) 32, 204
LmnI GCTCC 1 cut(s) 269
LpnPI CCDG 6 cut(s) 79, 197, 199, 224, 264, 280
Lsp1109I GCAGC 1 cut(s) 24
LweI GCATC 1 cut(s) 69
MaeII ACGT 1 cut(s) 137
MaeIII GTNAC 1 cut(s) 133
MalI GATC 2 cut(s) 34, 206
MboI GATC 2 cut(s) 32, 204
MboII GAAGA 2 cut(s) 131, 305
MluCI AATT 2 cut(s) 113, 223
MlyI GAGTC 2 cut(s) 43, 153
MmeI TCCRAC 1 cut(s) 130
MnlI CCTC 6 cut(s) 94, 136, 163, 172, 173, 193
MroXI GAANNNNTTC 1 cut(s) 300
MspA1I CMGCKG 1 cut(s) 231
MspI CCGG 3 cut(s) 66, 251, 267
MspR9I CCNGG 1 cut(s) 212
MvaI CCWGG 1 cut(s) 212
MvnI CGCG 2 cut(s) 177, 231
MwoI GCNNNNNNNGC 3 cut(s) 23, 174, 179
NdeII GATC 2 cut(s) 32, 204
NlaIII CATG 1 cut(s) 266
NmeAIII GCCGAG 1 cut(s) 144
NmuCI GTSAC 1 cut(s) 133
NruI TCGCGA 1 cut(s) 177
NspV TTCGAA 1 cut(s) 117
PceI AGGCCT 2 cut(s) 26, 182
PdmI GAANNNNTTC 1 cut(s) 300
PfeI GAWTC 1 cut(s) 283
PkrI GCNGC 4 cut(s) 39, 97, 233, 236
PleI GAGTC 2 cut(s) 43, 153
PpsI GAGTC 2 cut(s) 43, 153
Psp6I CCWGG 1 cut(s) 210
PspGI CCWGG 1 cut(s) 210
PspPI GGNCC 2 cut(s) 103, 259
RruI TCGCGA 1 cut(s) 177
SacII CCGCGG 1 cut(s) 232
SatI GCNGC 4 cut(s) 38, 96, 232, 235
Sau3AI GATC 2 cut(s) 32, 204
Sau96I GGNCC 2 cut(s) 103, 259
SchI GAGTC 2 cut(s) 43, 153
ScrFI CCNGG 1 cut(s) 212
SetI ASST 5 cut(s) 105, 140, 191, 222, 274
SfaNI GCATC 1 cut(s) 69
SfcI CTRYAG 1 cut(s) 28
Sfr303I CCGCGG 1 cut(s) 232
SfuI TTCGAA 1 cut(s) 117
SgrBI CCGCGG 1 cut(s) 232
SinI GGWCC 2 cut(s) 103, 259
SmlI CTYRAG 2 cut(s) 83, 278
SmoI CTYRAG 2 cut(s) 83, 278
Sse9I AATT 2 cut(s) 113, 223
SseBI AGGCCT 2 cut(s) 26, 182
SsiI CCGC 6 cut(s) 95, 98, 146, 229, 231, 234
StuI AGGCCT 2 cut(s) 26, 182
StyD4I CCNGG 1 cut(s) 210
TaaI ACNGT 1 cut(s) 76
TaiI ACGT 1 cut(s) 140
TaqI TCGA 1 cut(s) 117
TasI AATT 2 cut(s) 113, 223
TauI GCSGC 3 cut(s) 98, 234, 237
TfiI GAWTC 1 cut(s) 283
TseFI GTSAC 1 cut(s) 133
TseI GCWGC 1 cut(s) 37
Tsp45I GTSAC 1 cut(s) 133
TspDTI ATGAA 1 cut(s) 181
VpaK11BI GGWCC 2 cut(s) 103, 259
XagI CCTNNNNNAGG 1 cut(s) 167
XapI RAATTY 1 cut(s) 113
XmnI GAANNNNTTC 1 cut(s) 300
ZraI GACGTC 1 cut(s) 138
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.