FvH4_3g17380

Belongs to the complex I LYR family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0011003
Physical Location & Seq
Forward (+)
11068781 .. 11069582
802 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g17380.t1

Sequence Viewer

Length: 318 bp
ATGGCGAGAGCAGCAGAAGCAGTGAGCGCCTACAGATCGCTGCTGAGAGCGACTAGGAAATCGTTCGCCGGAGACACGGTGATGCTGAAGGGCTCGGCGGCGGAGGTCCGCCAGAAATTCGAAGAGAATAGGGGCGTGACGTCAGAGGCGGAGATCCAAAGACTCCTGGGTGAGGCACGCGAGGCGTCCAGCTTCATCTCCACCATGATCGTCCAGGCCAAGCTCAACTCCCGCGGCGGCTACGAAGTGAAGCCGGATAAGGACCATGCCGGAGCTACGCTTGAGATTCCTTCTGAACAAATCCTCAACAAATGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Complex1_LYR

Protein Analysis

106

Amino Acids

11.44

Weight (kDa)

8.85

Isoelectric Point (pI)

27.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Complex1_LYR PF05347 6 - 62 9.5e-12 Complex 1 protein (LYR family)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011003)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G62810 AT3G62810
fragaria_vesca FvH4_2g25692 FvH4_3g17380
malus_domestica MD03G1287900.v1.1 MD11G1310400.v1.1
prunus_persica Prupe.8G261100_v2.0.a1
pyrus_communis pycom16g13370
rosa_chinensis RchiOBHm_Chr6g0293971
rosa_laevigata RLG00000011911
rosa_multiflora Rmu_sc0005126.1_g000008 Rmu_sc0005647.1_g000004
rosa_roxburghii Rroxscaffold_7G00173780
rosa_rugosa Rorug05G0037400 Rorug06G0239600
rosa_samantha Rh6AG352700 Rh6BG359700 Rh6CG367000 Rh6DG353400
rosa_wichuraiana Rw6G030730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 143
AccII CGCG 2 cut(s) 180, 234
AciI CCGC 7 cut(s) 98, 101, 109, 149, 232, 234, 237
AclWI GGATC 1 cut(s) 148
AcsI RAATTY 1 cut(s) 116
AcuI CTGAAG 1 cut(s) 107
AcyI GRCGYC 2 cut(s) 140, 185
AfiI CCNNNNNNNGG 1 cut(s) 172
AjnI CCWGG 2 cut(s) 165, 213
AluBI AGCT 3 cut(s) 192, 223, 275
AluI AGCT 3 cut(s) 192, 223, 275
Alw26I GTCTC 1 cut(s) 66
AlwI GGATC 1 cut(s) 148
AoxI GGCC 1 cut(s) 216
ApeKI GCWGC 2 cut(s) 11, 40
ApoI RAATTY 1 cut(s) 116
Asp700I GAANNNNTTC 1 cut(s) 62
AspLEI GCGC 1 cut(s) 29
AspS9I GGNCC 2 cut(s) 106, 262
AsuHPI GGTGA 2 cut(s) 91, 182
AsuII TTCGAA 1 cut(s) 120
AvaII GGWCC 2 cut(s) 106, 262
BanII GRGCYC 1 cut(s) 95
BbvI GCAGC 2 cut(s) 23, 27
BciT130I CCWGG 2 cut(s) 167, 215
BcoDI GTCTC 1 cut(s) 66
BfaI CTAG 1 cut(s) 54
BfmI CTRYAG 1 cut(s) 31
BfoI RGCGCY 1 cut(s) 30
BisI GCNGC 5 cut(s) 12, 41, 99, 235, 238
BlsI GCNGC 5 cut(s) 13, 42, 100, 236, 239
Bme1390I CCNGG 2 cut(s) 167, 215
Bme18I GGWCC 2 cut(s) 106, 262
BmgT120I GGNCC 2 cut(s) 106, 262
BmrFI CCNGG 2 cut(s) 167, 215
BmsI GCATC 1 cut(s) 72
Bpu14I TTCGAA 1 cut(s) 120
BpuEI CTTGAG 1 cut(s) 302
BsaHI GRCGYC 2 cut(s) 140, 185
BsaJI CCNNGG 2 cut(s) 166, 232
BsaXI ACNNNNNCTCC 2 cut(s) 63, 93
Bsc4I CCNNNNNNNGG 1 cut(s) 172
BseBI CCWGG 2 cut(s) 167, 215
BseDI CCNNGG 2 cut(s) 166, 232
BseLI CCNNNNNNNGG 1 cut(s) 172
BseMII CTCAG 1 cut(s) 35
BseXI GCAGC 2 cut(s) 23, 27
Bsh1236I CGCG 2 cut(s) 180, 234
BshFI GGCC 1 cut(s) 218
BsiSI CCGG 3 cut(s) 69, 254, 270
BslI CCNNNNNNNGG 1 cut(s) 172
BsmAI GTCTC 1 cut(s) 66
BsnI GGCC 1 cut(s) 218
Bsp119I TTCGAA 1 cut(s) 120
Bsp1286I GDGCHC 1 cut(s) 95
Bsp143I GATC 3 cut(s) 35, 153, 207
BspACI CCGC 7 cut(s) 98, 101, 109, 149, 232, 234, 237
BspANI GGCC 1 cut(s) 218
BspCNI CTCAG 1 cut(s) 36
BspFNI CGCG 2 cut(s) 180, 234
BspPI GGATC 1 cut(s) 148
BspT104I TTCGAA 1 cut(s) 120
BssECI CCNNGG 2 cut(s) 166, 232
BssMI GATC 3 cut(s) 35, 153, 207
BssNI GRCGYC 2 cut(s) 140, 185
Bst2UI CCWGG 2 cut(s) 167, 215
Bst4CI ACNGT 1 cut(s) 79
Bst6I CTCTTC 1 cut(s) 117
BstACI GRCGYC 2 cut(s) 140, 185
BstBI TTCGAA 1 cut(s) 120
BstC8I GCNNGC 1 cut(s) 178
BstDEI CTNAG 1 cut(s) 44
BstDSI CCRYGG 1 cut(s) 232
BstENI CCTNNNNNAGG 1 cut(s) 170
BstFNI CGCG 2 cut(s) 180, 234
BstH2I RGCGCY 1 cut(s) 30
BstHHI GCGC 1 cut(s) 29
BstKTI GATC 3 cut(s) 38, 156, 210
BstMAI GTCTC 1 cut(s) 66
BstMBI GATC 3 cut(s) 35, 153, 207
BstMWI GCNNNNNNNGC 4 cut(s) 11, 17, 26, 182
BstNI CCWGG 2 cut(s) 167, 215
BstSCI CCNGG 2 cut(s) 165, 213
BstSFI CTRYAG 1 cut(s) 31
BstUI CGCG 2 cut(s) 180, 234
BstV1I GCAGC 2 cut(s) 23, 27
BstX2I RGATCY 1 cut(s) 153
BstYI RGATCY 1 cut(s) 153
BsuRI GGCC 1 cut(s) 218
BtgI CCRYGG 1 cut(s) 232
BtsI GCAGTG 1 cut(s) 27
BtsIMutI CAGTG 1 cut(s) 27
Cac8I GCNNGC 1 cut(s) 178
CfoI GCGC 1 cut(s) 29
Cfr13I GGNCC 2 cut(s) 106, 262
Cfr42I CCGCGG 1 cut(s) 235
CseI GACGC 1 cut(s) 174
CviAII CATG 2 cut(s) 205, 266
CviJI RGCY 7 cut(s) 93, 192, 218, 223, 240, 253, 275
CviKI_1 RGCY 7 cut(s) 93, 192, 218, 223, 240, 253, 275
DdeI CTNAG 1 cut(s) 44
DpnI GATC 3 cut(s) 37, 155, 209
DpnII GATC 3 cut(s) 35, 153, 207
Eam1104I CTCTTC 1 cut(s) 117
EarI CTCTTC 1 cut(s) 117
EciI GGCGGA 3 cut(s) 98, 116, 164
Eco24I GRGCYC 1 cut(s) 95
Eco47I GGWCC 2 cut(s) 106, 262
Eco57I CTGAAG 1 cut(s) 107
EcoNI CCTNNNNNAGG 1 cut(s) 170
EcoRII CCWGG 2 cut(s) 165, 213
EcoT38I GRGCYC 1 cut(s) 95
FaeI CATG 2 cut(s) 208, 269
FaiI YATR 2 cut(s) 206, 267
FatI CATG 2 cut(s) 204, 265
FauI CCCGC 1 cut(s) 239
Fnu4HI GCNGC 5 cut(s) 12, 41, 99, 235, 238
FriOI GRGCYC 1 cut(s) 95
Fsp4HI GCNGC 5 cut(s) 12, 41, 99, 235, 238
FspBI CTAG 1 cut(s) 54
GlaI GCGC 1 cut(s) 28
GluI GCNGC 5 cut(s) 12, 41, 99, 235, 238
HaeII RGCGCY 1 cut(s) 30
HaeIII GGCC 1 cut(s) 218
HapII CCGG 3 cut(s) 69, 254, 270
HgaI GACGC 1 cut(s) 174
HhaI GCGC 1 cut(s) 29
Hin1I GRCGYC 2 cut(s) 140, 185
Hin1II CATG 2 cut(s) 208, 269
Hin6I GCGC 1 cut(s) 27
HinP1I GCGC 1 cut(s) 27
HinfI GANTC 2 cut(s) 162, 286
HpaII CCGG 3 cut(s) 69, 254, 270
HphI GGTGA 2 cut(s) 91, 182
Hpy188I TCNGA 2 cut(s) 145, 295
HpyAV CCTTC 2 cut(s) 82, 300
HpyCH4III ACNGT 1 cut(s) 79
HpyCH4IV ACGT 1 cut(s) 140
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 17, 26, 182
HpyF3I CTNAG 1 cut(s) 44
HpySE526I ACGT 1 cut(s) 140
Hsp92I GRCGYC 2 cut(s) 140, 185
Hsp92II CATG 2 cut(s) 208, 269
HspAI GCGC 1 cut(s) 27
KspI CCGCGG 1 cut(s) 235
Kzo9I GATC 3 cut(s) 35, 153, 207
LmnI GCTCC 1 cut(s) 272
LpnPI CCDG 9 cut(s) 82, 125, 152, 179, 200, 202, 227, 267, 283
Lsp1109I GCAGC 2 cut(s) 23, 27
LweI GCATC 1 cut(s) 72
MaeI CTAG 1 cut(s) 54
MaeII ACGT 1 cut(s) 140
MaeIII GTNAC 1 cut(s) 136
MalI GATC 3 cut(s) 37, 155, 209
MboI GATC 3 cut(s) 35, 153, 207
MboII GAAGA 1 cut(s) 134
MflI RGATCY 1 cut(s) 153
MhlI GDGCHC 1 cut(s) 95
MluCI AATT 1 cut(s) 116
MlyI GAGTC 1 cut(s) 156
MnlI CCTC 5 cut(s) 97, 139, 166, 175, 314
MroXI GAANNNNTTC 1 cut(s) 62
MslI CAYNNNNRTG 1 cut(s) 80
MspA1I CMGCKG 1 cut(s) 234
MspI CCGG 3 cut(s) 69, 254, 270
MspR9I CCNGG 2 cut(s) 167, 215
MvaI CCWGG 2 cut(s) 167, 215
MvnI CGCG 2 cut(s) 180, 234
MwoI GCNNNNNNNGC 4 cut(s) 11, 17, 26, 182
NdeII GATC 3 cut(s) 35, 153, 207
NlaIII CATG 2 cut(s) 208, 269
NmeAIII GCCGAG 1 cut(s) 74
NmuCI GTSAC 1 cut(s) 136
NspV TTCGAA 1 cut(s) 120
PdmI GAANNNNTTC 1 cut(s) 62
PfeI GAWTC 1 cut(s) 286
PkrI GCNGC 5 cut(s) 13, 42, 100, 236, 239
PleI GAGTC 1 cut(s) 156
PpsI GAGTC 1 cut(s) 156
Psp6I CCWGG 2 cut(s) 165, 213
PspGI CCWGG 2 cut(s) 165, 213
PspPI GGNCC 2 cut(s) 106, 262
PsuI RGATCY 1 cut(s) 153
RseI CAYNNNNRTG 1 cut(s) 80
SacII CCGCGG 1 cut(s) 235
SatI GCNGC 5 cut(s) 12, 41, 99, 235, 238
Sau3AI GATC 3 cut(s) 35, 153, 207
Sau96I GGNCC 2 cut(s) 106, 262
SchI GAGTC 1 cut(s) 156
ScrFI CCNGG 2 cut(s) 167, 215
SduI GDGCHC 1 cut(s) 95
SetI ASST 5 cut(s) 108, 143, 194, 225, 277
SfaNI GCATC 1 cut(s) 72
SfcI CTRYAG 1 cut(s) 31
Sfr303I CCGCGG 1 cut(s) 235
SfuI TTCGAA 1 cut(s) 120
SgrBI CCGCGG 1 cut(s) 235
SinI GGWCC 2 cut(s) 106, 262
SmiMI CAYNNNNRTG 1 cut(s) 80
SmlI CTYRAG 1 cut(s) 281
SmoI CTYRAG 1 cut(s) 281
Sse9I AATT 1 cut(s) 116
SsiI CCGC 7 cut(s) 98, 101, 109, 149, 232, 234, 237
SspMI CTAG 1 cut(s) 54
StyD4I CCNGG 2 cut(s) 165, 213
TaaI ACNGT 1 cut(s) 79
TaiI ACGT 1 cut(s) 143
TaqI TCGA 1 cut(s) 120
TasI AATT 1 cut(s) 116
TauI GCSGC 3 cut(s) 101, 237, 240
TfiI GAWTC 1 cut(s) 286
TscAI CASTG 1 cut(s) 27
TseFI GTSAC 1 cut(s) 136
TseI GCWGC 2 cut(s) 11, 40
Tsp45I GTSAC 1 cut(s) 136
TspDTI ATGAA 1 cut(s) 184
TspRI CASTG 1 cut(s) 27
VpaK11BI GGWCC 2 cut(s) 106, 262
XagI CCTNNNNNAGG 1 cut(s) 170
XapI RAATTY 1 cut(s) 116
XmnI GAANNNNTTC 1 cut(s) 62
XspI CTAG 1 cut(s) 54
ZraI GACGTC 1 cut(s) 141
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.