MD11G1310400.v1.1

Belongs to the complex I LYR family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0011003
Physical Location & Seq
Reverse (-)
42343593 .. 42344662
1070 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1310400.v1.1.491

Sequence Viewer

Length: 318 bp
ATGGCGAGAGTAGAAGTACTGAGCGCGTACAGAGCGGTGATACGAGCGACGCGGAAGTCGTTCGCCGGAGACACGCCGATGCTGAAGGGTGCGGCGGCGGAGGTTCGCAAGAAGTTCGAAGAGAATAGGCACGTGACGTCAGAGGCGGAGATCCAGAGTCTCCTGGAACAGGCACGTGAGGCCTCCCGTTTCATCAGCGAAATGATCGTCCAGGCCAAGCTCAATCCCCACGGCGGTTACGAAGTGAAGCCGGAAAAAGATCATGCCGGAGCAACACTTGAGGTTCCTTCCGAAGAGCTTCTTCGCACCAAATCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Complex1_LYR

Protein Analysis

106

Amino Acids

11.69

Weight (kDa)

8.05

Isoelectric Point (pI)

29.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Complex1_LYR PF05347 5 - 61 6.9e-13 Complex 1 protein (LYR family)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011003)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G62810 AT3G62810
fragaria_vesca FvH4_2g25692 FvH4_3g17380
malus_domestica MD03G1287900.v1.1 MD11G1310400.v1.1
prunus_persica Prupe.8G261100_v2.0.a1
pyrus_communis pycom16g13370
rosa_chinensis RchiOBHm_Chr6g0293971
rosa_laevigata RLG00000011911
rosa_multiflora Rmu_sc0005126.1_g000008 Rmu_sc0005647.1_g000004
rosa_roxburghii Rroxscaffold_7G00173780
rosa_rugosa Rorug05G0037400 Rorug06G0239600
rosa_samantha Rh6AG352700 Rh6BG359700 Rh6CG367000 Rh6DG353400
rosa_wichuraiana Rw6G030730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 55
AatII GACGTC 1 cut(s) 140
AccBSI CCGCTC 1 cut(s) 35
AccII CGCG 2 cut(s) 26, 52
AciI CCGC 7 cut(s) 35, 52, 92, 95, 98, 146, 234
AclWI GGATC 1 cut(s) 145
AcuI CTGAAG 1 cut(s) 104
AcvI CACGTG 2 cut(s) 133, 176
AcyI GRCGYC 1 cut(s) 137
AfaI GTAC 2 cut(s) 18, 29
AfiI CCNNNNNNNGG 2 cut(s) 169, 233
AjnI CCWGG 2 cut(s) 162, 210
AluBI AGCT 2 cut(s) 220, 298
AluI AGCT 2 cut(s) 220, 298
Alw26I GTCTC 2 cut(s) 63, 164
AlwI GGATC 1 cut(s) 145
AoxI GGCC 2 cut(s) 180, 213
ArsI GACNNNNNNTTYG 2 cut(s) 192, 224
Asp700I GAANNNNTTC 2 cut(s) 59, 297
AspLEI GCGC 1 cut(s) 26
AsuHPI GGTGA 1 cut(s) 49
AsuII TTCGAA 1 cut(s) 117
BbrPI CACGTG 2 cut(s) 133, 176
BceAI ACGGC 1 cut(s) 247
BcgI CGANNNNNNTGC 2 cut(s) 97, 131
BciT130I CCWGG 2 cut(s) 164, 212
BcoDI GTCTC 2 cut(s) 63, 164
BisI GCNGC 2 cut(s) 93, 96
BlsI GCNGC 2 cut(s) 94, 97
BmcAI AGTACT 1 cut(s) 18
Bme1390I CCNGG 2 cut(s) 164, 212
BmiI GGNNCC 1 cut(s) 285
BmrFI CCNGG 2 cut(s) 164, 212
BmsI GCATC 1 cut(s) 69
Bpu14I TTCGAA 1 cut(s) 117
BpuEI CTTGAG 1 cut(s) 299
BsaAI YACGTR 2 cut(s) 133, 176
BsaHI GRCGYC 1 cut(s) 137
BsaJI CCNNGG 1 cut(s) 229
Bsc4I CCNNNNNNNGG 2 cut(s) 169, 233
BseBI CCWGG 2 cut(s) 164, 212
BseDI CCNNGG 1 cut(s) 229
BseLI CCNNNNNNNGG 2 cut(s) 169, 233
BseMII CTCAG 1 cut(s) 11
Bsh1236I CGCG 2 cut(s) 26, 52
BshFI GGCC 2 cut(s) 182, 215
BsiSI CCGG 3 cut(s) 66, 251, 267
BslI CCNNNNNNNGG 2 cut(s) 169, 233
BsmAI GTCTC 2 cut(s) 63, 164
BsnI GGCC 2 cut(s) 182, 215
Bsp119I TTCGAA 1 cut(s) 117
Bsp143I GATC 3 cut(s) 150, 204, 259
BspACI CCGC 7 cut(s) 35, 52, 92, 95, 98, 146, 234
BspANI GGCC 2 cut(s) 182, 215
BspCNI CTCAG 1 cut(s) 12
BspFNI CGCG 2 cut(s) 26, 52
BspLI GGNNCC 1 cut(s) 285
BspPI GGATC 1 cut(s) 145
BspQI GCTCTTC 1 cut(s) 288
BspT104I TTCGAA 1 cut(s) 117
BsrBI CCGCTC 1 cut(s) 35
BssECI CCNNGG 1 cut(s) 229
BssMI GATC 3 cut(s) 150, 204, 259
BssNI GRCGYC 1 cut(s) 137
Bst2UI CCWGG 2 cut(s) 164, 212
Bst6I CTCTTC 2 cut(s) 114, 288
BstACI GRCGYC 1 cut(s) 137
BstBAI YACGTR 2 cut(s) 133, 176
BstBI TTCGAA 1 cut(s) 117
BstDEI CTNAG 1 cut(s) 20
BstDSI CCRYGG 1 cut(s) 229
BstENI CCTNNNNNAGG 1 cut(s) 167
BstFNI CGCG 2 cut(s) 26, 52
BstHHI GCGC 1 cut(s) 26
BstKTI GATC 3 cut(s) 153, 207, 262
BstMAI GTCTC 2 cut(s) 63, 164
BstMBI GATC 3 cut(s) 150, 204, 259
BstMWI GCNNNNNNNGC 2 cut(s) 32, 179
BstNI CCWGG 2 cut(s) 164, 212
BstSCI CCNGG 2 cut(s) 162, 210
BstUI CGCG 2 cut(s) 26, 52
BstX2I RGATCY 1 cut(s) 150
BstYI RGATCY 1 cut(s) 150
BsuRI GGCC 2 cut(s) 182, 215
BtgI CCRYGG 1 cut(s) 229
CfoI GCGC 1 cut(s) 26
CseI GACGC 1 cut(s) 58
Csp6I GTAC 2 cut(s) 17, 28
CviAII CATG 1 cut(s) 263
CviJI RGCY 5 cut(s) 182, 215, 220, 250, 298
CviKI_1 RGCY 5 cut(s) 182, 215, 220, 250, 298
CviQI GTAC 2 cut(s) 17, 28
DdeI CTNAG 1 cut(s) 20
DpnI GATC 3 cut(s) 152, 206, 261
DpnII GATC 3 cut(s) 150, 204, 259
DrdI GACNNNNNNGTC 1 cut(s) 55
DseDI GACNNNNNNGTC 1 cut(s) 55
Eam1104I CTCTTC 2 cut(s) 114, 288
EarI CTCTTC 2 cut(s) 114, 288
EciI GGCGGA 2 cut(s) 113, 161
Eco147I AGGCCT 1 cut(s) 182
Eco57I CTGAAG 1 cut(s) 104
Eco72I CACGTG 2 cut(s) 133, 176
EcoNI CCTNNNNNAGG 1 cut(s) 167
EcoRII CCWGG 2 cut(s) 162, 210
FaeI CATG 1 cut(s) 266
FaiI YATR 1 cut(s) 264
FalI AAGNNNNNCTT 2 cut(s) 285, 317
FatI CATG 1 cut(s) 262
Fnu4HI GCNGC 2 cut(s) 93, 96
Fsp4HI GCNGC 2 cut(s) 93, 96
GlaI GCGC 1 cut(s) 25
GluI GCNGC 2 cut(s) 93, 96
HaeIII GGCC 2 cut(s) 182, 215
HapII CCGG 3 cut(s) 66, 251, 267
HgaI GACGC 1 cut(s) 58
HhaI GCGC 1 cut(s) 26
Hin1I GRCGYC 1 cut(s) 137
Hin1II CATG 1 cut(s) 266
Hin6I GCGC 1 cut(s) 24
HinP1I GCGC 1 cut(s) 24
HinfI GANTC 1 cut(s) 157
HpaII CCGG 3 cut(s) 66, 251, 267
HphI GGTGA 1 cut(s) 49
Hpy188I TCNGA 2 cut(s) 142, 292
Hpy188III TCNNGA 2 cut(s) 154, 315
Hpy99I CGWCG 1 cut(s) 52
HpyAV CCTTC 2 cut(s) 79, 297
HpyCH4IV ACGT 3 cut(s) 132, 137, 175
HpyF10VI GCNNNNNNNGC 2 cut(s) 32, 179
HpyF3I CTNAG 1 cut(s) 20
HpySE526I ACGT 3 cut(s) 132, 137, 175
Hsp92I GRCGYC 1 cut(s) 137
Hsp92II CATG 1 cut(s) 266
HspAI GCGC 1 cut(s) 24
Kzo9I GATC 3 cut(s) 150, 204, 259
LguI GCTCTTC 1 cut(s) 288
LmnI GCTCC 1 cut(s) 269
LpnPI CCDG 9 cut(s) 79, 149, 155, 167, 176, 197, 224, 264, 280
LweI GCATC 1 cut(s) 69
MaeII ACGT 3 cut(s) 132, 137, 175
MaeIII GTNAC 2 cut(s) 133, 236
MalI GATC 3 cut(s) 152, 206, 261
MbiI CCGCTC 1 cut(s) 35
MboI GATC 3 cut(s) 150, 204, 259
MboII GAAGA 3 cut(s) 131, 293, 305
MflI RGATCY 1 cut(s) 150
MlyI GAGTC 1 cut(s) 166
MnlI CCTC 5 cut(s) 94, 136, 172, 193, 274
MroXI GAANNNNTTC 2 cut(s) 59, 297
MslI CAYNNNNRTG 1 cut(s) 77
MspI CCGG 3 cut(s) 66, 251, 267
MspR9I CCNGG 2 cut(s) 164, 212
MvaI CCWGG 2 cut(s) 164, 212
MvnI CGCG 2 cut(s) 26, 52
MwoI GCNNNNNNNGC 2 cut(s) 32, 179
NdeII GATC 3 cut(s) 150, 204, 259
NlaIII CATG 1 cut(s) 266
NlaIV GGNNCC 1 cut(s) 285
NmuCI GTSAC 1 cut(s) 133
NspV TTCGAA 1 cut(s) 117
PceI AGGCCT 1 cut(s) 182
PciSI GCTCTTC 1 cut(s) 288
PcsI WCGNNNNNNNCGW 2 cut(s) 56, 237
PdmI GAANNNNTTC 2 cut(s) 59, 297
PfoI TCCNGGA 1 cut(s) 162
PkrI GCNGC 2 cut(s) 94, 97
PleI GAGTC 1 cut(s) 165
PmaCI CACGTG 2 cut(s) 133, 176
PmlI CACGTG 2 cut(s) 133, 176
PpsI GAGTC 1 cut(s) 165
Ppu21I YACGTR 2 cut(s) 133, 176
Psp6I CCWGG 2 cut(s) 162, 210
PspCI CACGTG 2 cut(s) 133, 176
PspGI CCWGG 2 cut(s) 162, 210
PspN4I GGNNCC 1 cut(s) 285
PsuI RGATCY 1 cut(s) 150
RsaI GTAC 2 cut(s) 18, 29
RsaNI GTAC 2 cut(s) 17, 28
RseI CAYNNNNRTG 1 cut(s) 77
SapI GCTCTTC 1 cut(s) 288
SatI GCNGC 2 cut(s) 93, 96
Sau3AI GATC 3 cut(s) 150, 204, 259
ScaI AGTACT 1 cut(s) 18
SchI GAGTC 1 cut(s) 166
ScrFI CCNGG 2 cut(s) 164, 212
SetI ASST 7 cut(s) 105, 135, 140, 178, 222, 285, 300
SfaNI GCATC 1 cut(s) 69
SfuI TTCGAA 1 cut(s) 117
SmiMI CAYNNNNRTG 1 cut(s) 77
SmlI CTYRAG 1 cut(s) 278
SmoI CTYRAG 1 cut(s) 278
SseBI AGGCCT 1 cut(s) 182
SsiI CCGC 7 cut(s) 35, 52, 92, 95, 98, 146, 234
StuI AGGCCT 1 cut(s) 182
StyD4I CCNGG 2 cut(s) 162, 210
TaiI ACGT 3 cut(s) 135, 140, 178
TaqI TCGA 1 cut(s) 117
TatI WGTACW 1 cut(s) 16
TauI GCSGC 2 cut(s) 95, 98
TseFI GTSAC 1 cut(s) 133
Tsp45I GTSAC 1 cut(s) 133
TspDTI ATGAA 1 cut(s) 181
XagI CCTNNNNNAGG 1 cut(s) 167
XmnI GAANNNNTTC 2 cut(s) 59, 297
ZraI GACGTC 1 cut(s) 138
ZrmI AGTACT 1 cut(s) 18
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.