Prupe.8G261100_v2.0.a1

Belongs to the complex I LYR family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0011003
Physical Location & Seq
Forward (+)
22057662 .. 22058465
804 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G261100.1

Sequence Viewer

Length: 315 bp
ATGGCGAGAGCAGAAGCATTGAACGCGTACAGGGCGCTGCTAAGAGCGACTCGGAAGTCGTTCGCCGGAGACACACCGATGCTAAAGGGGTCGGCGGCGGAGGTCCGCAAGAAGTTCGAAGAGAATAGGCACGTGACCTCGGATGTGGAGATCCAGAGACTCCTGGAAGAGGCACGCGAGGCCGCCCTTTTCATCACCCAAATGATCGTCCAGGCTAAGCTCAATTCTCGCGGCGGTTATGAAGTGAAGGCAGACAAAGATCATGCGGGAGCAACGCTTGAGGTTCCTTCTGAAGAACTTCTTCCCAAGTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Complex1_LYR

Protein Analysis

105

Amino Acids

11.54

Weight (kDa)

8.03

Isoelectric Point (pI)

22.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011003)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G62810 AT3G62810
fragaria_vesca FvH4_2g25692 FvH4_3g17380
malus_domestica MD03G1287900.v1.1 MD11G1310400.v1.1
prunus_persica Prupe.8G261100_v2.0.a1
pyrus_communis pycom16g13370
rosa_chinensis RchiOBHm_Chr6g0293971
rosa_laevigata RLG00000011911
rosa_multiflora Rmu_sc0005126.1_g000008 Rmu_sc0005647.1_g000004
rosa_roxburghii Rroxscaffold_7G00173780
rosa_rugosa Rorug05G0037400 Rorug06G0239600
rosa_samantha Rh6AG352700 Rh6BG359700 Rh6CG367000 Rh6DG353400
rosa_wichuraiana Rw6G030730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 55
AccII CGCG 3 cut(s) 26, 177, 231
AciI CCGC 7 cut(s) 95, 98, 106, 183, 231, 234, 266
AclWI GGATC 1 cut(s) 145
AcuI CTGAAG 1 cut(s) 312
AcvI CACGTG 1 cut(s) 133
AfaI GTAC 1 cut(s) 29
AfiI CCNNNNNNNGG 1 cut(s) 169
AflIII ACRYGT 1 cut(s) 24
AgsI TTSAA 1 cut(s) 22
AjnI CCWGG 2 cut(s) 162, 210
AluBI AGCT 1 cut(s) 220
AluI AGCT 1 cut(s) 220
Alw26I GTCTC 2 cut(s) 63, 151
AlwI GGATC 1 cut(s) 145
AoxI GGCC 1 cut(s) 180
ApeKI GCWGC 1 cut(s) 37
Asp700I GAANNNNTTC 3 cut(s) 59, 297, 300
AspLEI GCGC 1 cut(s) 37
AspS9I GGNCC 1 cut(s) 103
AsuHPI GGTGA 1 cut(s) 187
AsuII TTCGAA 1 cut(s) 117
AvaII GGWCC 1 cut(s) 103
BbrPI CACGTG 1 cut(s) 133
BbvI GCAGC 1 cut(s) 24
BcgI CGANNNNNNTGC 2 cut(s) 97, 131
BciT130I CCWGG 2 cut(s) 164, 212
BcoDI GTCTC 2 cut(s) 63, 151
BfoI RGCGCY 1 cut(s) 38
BisI GCNGC 4 cut(s) 38, 96, 183, 232
BlpI GCTNAGC 1 cut(s) 216
BlsI GCNGC 4 cut(s) 39, 97, 184, 233
Bme1390I CCNGG 2 cut(s) 164, 212
Bme18I GGWCC 1 cut(s) 103
BmgT120I GGNCC 1 cut(s) 103
BmiI GGNNCC 1 cut(s) 285
BmrFI CCNGG 2 cut(s) 164, 212
BmsI GCATC 1 cut(s) 69
Bpu1102I GCTNAGC 1 cut(s) 216
Bpu14I TTCGAA 1 cut(s) 117
BpuEI CTTGAG 1 cut(s) 299
BsaAI YACGTR 1 cut(s) 133
BsaJI CCNNGG 1 cut(s) 138
Bsc4I CCNNNNNNNGG 1 cut(s) 169
BseBI CCWGG 2 cut(s) 164, 212
BseDI CCNNGG 1 cut(s) 138
BseGI GGATG 1 cut(s) 148
BseLI CCNNNNNNNGG 1 cut(s) 169
BseXI GCAGC 1 cut(s) 24
Bsh1236I CGCG 3 cut(s) 26, 177, 231
BshFI GGCC 1 cut(s) 182
BsiSI CCGG 1 cut(s) 66
BslI CCNNNNNNNGG 1 cut(s) 169
BsmAI GTCTC 2 cut(s) 63, 151
BsnI GGCC 1 cut(s) 182
Bsp119I TTCGAA 1 cut(s) 117
Bsp143I GATC 3 cut(s) 150, 204, 259
Bsp1720I GCTNAGC 1 cut(s) 216
BspACI CCGC 7 cut(s) 95, 98, 106, 183, 231, 234, 266
BspANI GGCC 1 cut(s) 182
BspFNI CGCG 3 cut(s) 26, 177, 231
BspLI GGNNCC 1 cut(s) 285
BspPI GGATC 1 cut(s) 145
BspT104I TTCGAA 1 cut(s) 117
BssECI CCNNGG 1 cut(s) 138
BssMI GATC 3 cut(s) 150, 204, 259
Bst2UI CCWGG 2 cut(s) 164, 212
Bst6I CTCTTC 2 cut(s) 114, 162
BstBAI YACGTR 1 cut(s) 133
BstBI TTCGAA 1 cut(s) 117
BstC8I GCNNGC 1 cut(s) 175
BstDEI CTNAG 2 cut(s) 41, 216
BstENI CCTNNNNNAGG 1 cut(s) 167
BstF5I GGATG 1 cut(s) 148
BstFNI CGCG 3 cut(s) 26, 177, 231
BstH2I RGCGCY 1 cut(s) 38
BstHHI GCGC 1 cut(s) 37
BstKTI GATC 3 cut(s) 153, 207, 262
BstMAI GTCTC 2 cut(s) 63, 151
BstMBI GATC 3 cut(s) 150, 204, 259
BstMWI GCNNNNNNNGC 3 cut(s) 23, 32, 179
BstNI CCWGG 2 cut(s) 164, 212
BstSCI CCNGG 2 cut(s) 162, 210
BstUI CGCG 3 cut(s) 26, 177, 231
BstV1I GCAGC 1 cut(s) 24
BstX2I RGATCY 1 cut(s) 150
BstYI RGATCY 1 cut(s) 150
BsuRI GGCC 1 cut(s) 182
BtsCI GGATG 1 cut(s) 148
Cac8I GCNNGC 1 cut(s) 175
CfoI GCGC 1 cut(s) 37
Cfr13I GGNCC 1 cut(s) 103
Csp6I GTAC 1 cut(s) 28
CviAII CATG 1 cut(s) 263
CviJI RGCY 3 cut(s) 182, 215, 220
CviKI_1 RGCY 3 cut(s) 182, 215, 220
CviQI GTAC 1 cut(s) 28
DdeI CTNAG 2 cut(s) 41, 216
DpnI GATC 3 cut(s) 152, 206, 261
DpnII GATC 3 cut(s) 150, 204, 259
DrdI GACNNNNNNGTC 1 cut(s) 55
DseDI GACNNNNNNGTC 1 cut(s) 55
Eam1104I CTCTTC 2 cut(s) 114, 162
EarI CTCTTC 2 cut(s) 114, 162
EciI GGCGGA 1 cut(s) 113
Eco47I GGWCC 1 cut(s) 103
Eco57I CTGAAG 1 cut(s) 312
Eco72I CACGTG 1 cut(s) 133
EcoNI CCTNNNNNAGG 1 cut(s) 167
EcoRII CCWGG 2 cut(s) 162, 210
FaeI CATG 1 cut(s) 266
FaiI YATR 2 cut(s) 240, 264
FalI AAGNNNNNCTT 1 cut(s) 285
FatI CATG 1 cut(s) 262
FauI CCCGC 1 cut(s) 259
Fnu4HI GCNGC 4 cut(s) 38, 96, 183, 232
FokI GGATG 1 cut(s) 155
Fsp4HI GCNGC 4 cut(s) 38, 96, 183, 232
GlaI GCGC 1 cut(s) 36
GluI GCNGC 4 cut(s) 38, 96, 183, 232
HaeII RGCGCY 1 cut(s) 38
HaeIII GGCC 1 cut(s) 182
HapII CCGG 1 cut(s) 66
HhaI GCGC 1 cut(s) 37
Hin1II CATG 1 cut(s) 266
Hin6I GCGC 1 cut(s) 35
HinP1I GCGC 1 cut(s) 35
HinfI GANTC 2 cut(s) 49, 159
HpaII CCGG 1 cut(s) 66
HphI GGTGA 1 cut(s) 187
Hpy188I TCNGA 3 cut(s) 54, 142, 292
Hpy188III TCNNGA 2 cut(s) 154, 312
HpyAV CCTTC 2 cut(s) 241, 297
HpyCH4IV ACGT 1 cut(s) 132
HpyF10VI GCNNNNNNNGC 3 cut(s) 23, 32, 179
HpyF3I CTNAG 2 cut(s) 41, 216
HpySE526I ACGT 1 cut(s) 132
Hsp92II CATG 1 cut(s) 266
HspAI GCGC 1 cut(s) 35
Kzo9I GATC 3 cut(s) 150, 204, 259
LmnI GCTCC 1 cut(s) 269
LpnPI CCDG 7 cut(s) 16, 79, 149, 167, 176, 197, 224
Lsp1109I GCAGC 1 cut(s) 24
LweI GCATC 1 cut(s) 69
MaeII ACGT 1 cut(s) 132
MaeIII GTNAC 1 cut(s) 133
MalI GATC 3 cut(s) 152, 206, 261
MboI GATC 3 cut(s) 150, 204, 259
MboII GAAGA 4 cut(s) 131, 179, 293, 305
MflI RGATCY 1 cut(s) 150
MluCI AATT 1 cut(s) 223
MluI ACGCGT 1 cut(s) 24
MlyI GAGTC 2 cut(s) 43, 153
MnlI CCTC 5 cut(s) 94, 148, 163, 172, 274
MroXI GAANNNNTTC 3 cut(s) 59, 297, 300
MslI CAYNNNNRTG 2 cut(s) 77, 200
MspI CCGG 1 cut(s) 66
MspR9I CCNGG 2 cut(s) 164, 212
MvaI CCWGG 2 cut(s) 164, 212
MvnI CGCG 3 cut(s) 26, 177, 231
MwoI GCNNNNNNNGC 3 cut(s) 23, 32, 179
NdeII GATC 3 cut(s) 150, 204, 259
NlaIII CATG 1 cut(s) 266
NlaIV GGNNCC 1 cut(s) 285
NmuCI GTSAC 1 cut(s) 133
NspV TTCGAA 1 cut(s) 117
PdmI GAANNNNTTC 3 cut(s) 59, 297, 300
PfoI TCCNGGA 1 cut(s) 162
PkrI GCNGC 4 cut(s) 39, 97, 184, 233
PleI GAGTC 2 cut(s) 43, 153
PmaCI CACGTG 1 cut(s) 133
PmlI CACGTG 1 cut(s) 133
PpsI GAGTC 2 cut(s) 43, 153
Ppu21I YACGTR 1 cut(s) 133
Psp6I CCWGG 2 cut(s) 162, 210
PspCI CACGTG 1 cut(s) 133
PspGI CCWGG 2 cut(s) 162, 210
PspN4I GGNNCC 1 cut(s) 285
PspPI GGNCC 1 cut(s) 103
PsuI RGATCY 1 cut(s) 150
RsaI GTAC 1 cut(s) 29
RsaNI GTAC 1 cut(s) 28
RseI CAYNNNNRTG 2 cut(s) 77, 200
SatI GCNGC 4 cut(s) 38, 96, 183, 232
Sau3AI GATC 3 cut(s) 150, 204, 259
Sau96I GGNCC 1 cut(s) 103
SchI GAGTC 2 cut(s) 43, 153
ScrFI CCNGG 2 cut(s) 164, 212
SetI ASST 5 cut(s) 105, 135, 140, 222, 285
SfaNI GCATC 1 cut(s) 69
SfuI TTCGAA 1 cut(s) 117
SinI GGWCC 1 cut(s) 103
SmiMI CAYNNNNRTG 2 cut(s) 77, 200
SmlI CTYRAG 1 cut(s) 278
SmoI CTYRAG 1 cut(s) 278
Sse9I AATT 1 cut(s) 223
SsiI CCGC 7 cut(s) 95, 98, 106, 183, 231, 234, 266
StyD4I CCNGG 2 cut(s) 162, 210
TaiI ACGT 1 cut(s) 135
TaqI TCGA 1 cut(s) 117
TasI AATT 1 cut(s) 223
TauI GCSGC 3 cut(s) 98, 185, 234
TseFI GTSAC 1 cut(s) 133
TseI GCWGC 1 cut(s) 37
Tsp45I GTSAC 1 cut(s) 133
TspDTI ATGAA 2 cut(s) 181, 255
VpaK11BI GGWCC 1 cut(s) 103
XagI CCTNNNNNAGG 1 cut(s) 167
XmnI GAANNNNTTC 3 cut(s) 59, 297, 300
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.