Rorug05G0037400

Belongs to the oxygen-dependent FAD-linked oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000925
Physical Location & Seq
Reverse (-)
2795889 .. 2798861
2973 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0037400.1

Sequence Viewer

Length: 582 bp
ATGTATGGACATGTTGAGAAGCTGGCTGAAGAGATTAAAAAGGGAGCTGCATCTGTGGAAGGAGTAGAAGCCCAACTATATCAGGTACCAGAAACACTGCAAGATGAGGTTCTCGGAAAGATGGGTGCACCACCAAAGAGCGAAGTACCTATTATTGCACCCAATGAGCTTTCTGATGCCGATGGTTTACTGTTTGGTTTCCCTACTAGATTTGGAATGATGGCTGCACAGTTCAAAGCATTTTTAGATGCAACCGGAGGTTTATGGAGGACACAACAGTTAGCAGGCAAACCTGCAGGAATTTTCTACAGCACTGGTTCTCAAGGAGGTGGACAAGAGACTACCGCCTTGACAGCCATCACTCAGCTTGTTCACCATGGAATGGTGTTTGTGCCAATTGGGTACACATTTGGAGCTGGCATGTTTGAGATGGAGCAGATCAAGGGTGGCAGCCCCTATGGTGCAGGAACTTATGCCGGGGATGGCACAAGACAACCTTCTGAACTCGAACTACAGCAAGCTTTCCACCAGGGAAAGTATTTCGCCAGCATTGCCAAGAAACTCAAGGGGACTACTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
BBE FAD_binding_4

Protein Analysis

193

Amino Acids

20.47

Weight (kDa)

5.57

Isoelectric Point (pI)

34.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Flavodoxin_1 PF00258 1 - 127 2.6e-06 Flavodoxin
FMN_red PF03358 6 - 134 3.4e-13 NADPH-dependent FMN reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 301
Acc65I GGTACC 1 cut(s) 85
AccB1I GGYRCC 1 cut(s) 85
AccB7I CCANNNNNTGG 1 cut(s) 382
AciI CCGC 1 cut(s) 345
AcsI RAATTY 1 cut(s) 300
AcuI CTGAAG 1 cut(s) 48
AfaI GTAC 3 cut(s) 87, 147, 404
AfiI CCNNNNNNNGG 1 cut(s) 382
AflIII ACRYGT 1 cut(s) 10
AgsI TTSAA 1 cut(s) 235
AjnI CCWGG 1 cut(s) 528
AluBI AGCT 6 cut(s) 22, 47, 169, 367, 416, 521
AluI AGCT 6 cut(s) 22, 47, 169, 367, 416, 521
Alw21I GWGCWC 1 cut(s) 130
Alw26I GTCTC 1 cut(s) 332
Alw44I GTGCAC 1 cut(s) 126
ApaLI GTGCAC 1 cut(s) 126
ApeKI GCWGC 3 cut(s) 47, 224, 450
ApoI RAATTY 1 cut(s) 300
Asp718I GGTACC 1 cut(s) 85
AsuC2I CCSGG 1 cut(s) 478
AsuHPI GGTGA 1 cut(s) 365
BaeGI GKGCMC 1 cut(s) 130
BanI GGYRCC 1 cut(s) 85
Bbv12I GWGCWC 1 cut(s) 130
BbvI GCAGC 3 cut(s) 34, 211, 462
BccI CCATC 6 cut(s) 115, 176, 214, 365, 424, 476
BciT130I CCWGG 1 cut(s) 530
BcnI CCSGG 1 cut(s) 478
BcoDI GTCTC 1 cut(s) 332
BfaI CTAG 1 cut(s) 207
BfmI CTRYAG 3 cut(s) 294, 307, 512
BfuAI ACCTGC 1 cut(s) 301
BisI GCNGC 3 cut(s) 48, 225, 451
BlsI GCNGC 3 cut(s) 49, 226, 452
Bme1390I CCNGG 2 cut(s) 478, 530
BmiI GGNNCC 1 cut(s) 87
BmrFI CCNGG 2 cut(s) 478, 530
BmsI GCATC 3 cut(s) 59, 166, 238
BpuEI CTTGAG 2 cut(s) 306, 548
BpuMI CCSGG 1 cut(s) 478
BsaJI CCNNGG 3 cut(s) 376, 477, 529
BsaWI WCCGGW 1 cut(s) 254
Bsc4I CCNNNNNNNGG 1 cut(s) 382
Bse1I ACTGG 1 cut(s) 319
Bse3DI GCAATG 1 cut(s) 549
BseBI CCWGG 1 cut(s) 530
BseDI CCNNGG 3 cut(s) 376, 477, 529
BseGI GGATG 1 cut(s) 487
BseLI CCNNNNNNNGG 1 cut(s) 382
BseMI GCAATG 1 cut(s) 549
BseMII CTCAG 1 cut(s) 377
BseNI ACTGG 1 cut(s) 319
BseSI GKGCMC 1 cut(s) 130
BseXI GCAGC 3 cut(s) 34, 211, 462
BsgI GTGCAG 2 cut(s) 210, 483
BshNI GGYRCC 1 cut(s) 85
BsiHKAI GWGCWC 1 cut(s) 130
BsiSI CCGG 2 cut(s) 255, 477
BslI CCNNNNNNNGG 1 cut(s) 382
BsmAI GTCTC 1 cut(s) 332
Bsp1286I GDGCHC 1 cut(s) 130
Bsp143I GATC 1 cut(s) 438
Bsp19I CCATGG 1 cut(s) 376
BspACI CCGC 1 cut(s) 345
BspCNI CTCAG 1 cut(s) 376
BspLI GGNNCC 1 cut(s) 87
BspMAI CTGCAG 1 cut(s) 298
BspMI ACCTGC 1 cut(s) 301
BspT107I GGYRCC 1 cut(s) 85
BsrDI GCAATG 1 cut(s) 549
BsrI ACTGG 1 cut(s) 319
BssECI CCNNGG 3 cut(s) 376, 477, 529
BssMI GATC 1 cut(s) 438
BssT1I CCWWGG 1 cut(s) 376
Bst2UI CCWGG 1 cut(s) 530
Bst4CI ACNGT 3 cut(s) 192, 231, 279
Bst6I CTCTTC 1 cut(s) 24
BstC8I GCNNGC 5 cut(s) 24, 286, 418, 519, 547
BstDEI CTNAG 1 cut(s) 363
BstDSI CCRYGG 1 cut(s) 376
BstF5I GGATG 1 cut(s) 487
BstKTI GATC 1 cut(s) 441
BstMAI GTCTC 1 cut(s) 332
BstMBI GATC 1 cut(s) 438
BstMWI GCNNNNNNNGC 2 cut(s) 353, 551
BstNI CCWGG 1 cut(s) 530
BstNSI RCATGY 2 cut(s) 14, 424
BstSCI CCNGG 2 cut(s) 476, 528
BstSFI CTRYAG 3 cut(s) 294, 307, 512
BstSLI GKGCMC 1 cut(s) 130
BstV1I GCAGC 3 cut(s) 34, 211, 462
BtgI CCRYGG 1 cut(s) 376
BtsCI GGATG 1 cut(s) 487
BtsI GCAGTG 1 cut(s) 95
BtsIMutI CAGTG 2 cut(s) 95, 312
BveI ACCTGC 1 cut(s) 301
Cac8I GCNNGC 5 cut(s) 24, 286, 418, 519, 547
Csp6I GTAC 3 cut(s) 86, 146, 403
CviAII CATG 3 cut(s) 11, 377, 421
CviQI GTAC 3 cut(s) 86, 146, 403
DdeI CTNAG 1 cut(s) 363
DpnI GATC 1 cut(s) 440
DpnII GATC 1 cut(s) 438
Eam1104I CTCTTC 1 cut(s) 24
EarI CTCTTC 1 cut(s) 24
Eco130I CCWWGG 1 cut(s) 376
Eco57I CTGAAG 1 cut(s) 48
EcoRII CCWGG 1 cut(s) 528
EcoT14I CCWWGG 1 cut(s) 376
ErhI CCWWGG 1 cut(s) 376
FaeI CATG 3 cut(s) 14, 380, 424
FaiI YATR 8 cut(s) 6, 12, 79, 265, 378, 422, 459, 474
FalI AAGNNNNNCTT 2 cut(s) 481, 513
FatI CATG 3 cut(s) 10, 376, 420
Fnu4HI GCNGC 3 cut(s) 48, 225, 451
FokI GGATG 1 cut(s) 494
Fsp4HI GCNGC 3 cut(s) 48, 225, 451
FspBI CTAG 1 cut(s) 207
GluI GCNGC 3 cut(s) 48, 225, 451
HapII CCGG 2 cut(s) 255, 477
Hin1II CATG 3 cut(s) 14, 380, 424
HindIII AAGCTT 1 cut(s) 519
HpaII CCGG 2 cut(s) 255, 477
HphI GGTGA 1 cut(s) 365
Hpy166II GTNNAC 5 cut(s) 128, 188, 332, 373, 405
Hpy188I TCNGA 3 cut(s) 116, 175, 502
Hpy8I GTNNAC 5 cut(s) 128, 188, 332, 373, 405
HpyAV CCTTC 2 cut(s) 53, 507
HpyCH4III ACNGT 3 cut(s) 192, 231, 279
HpyCH4V TGCA 8 cut(s) 50, 100, 128, 158, 227, 251, 296, 464
HpyF10VI GCNNNNNNNGC 2 cut(s) 353, 551
HpyF3I CTNAG 1 cut(s) 363
Hsp92II CATG 3 cut(s) 14, 380, 424
KpnI GGTACC 1 cut(s) 89
Kzo9I GATC 1 cut(s) 438
LmnI GCTCC 3 cut(s) 44, 413, 433
Lsp1109I GCAGC 3 cut(s) 34, 211, 462
LweI GCATC 3 cut(s) 59, 166, 238
MaeI CTAG 1 cut(s) 207
MalI GATC 1 cut(s) 440
MboI GATC 1 cut(s) 438
MboII GAAGA 1 cut(s) 41
MfeI CAATTG 1 cut(s) 396
MhlI GDGCHC 1 cut(s) 130
MluCI AATT 2 cut(s) 300, 396
MnlI CCTC 4 cut(s) 100, 251, 261, 320
MseI TTAA 1 cut(s) 36
MspI CCGG 2 cut(s) 255, 477
MspR9I CCNGG 2 cut(s) 478, 530
MunI CAATTG 1 cut(s) 396
MvaI CCWGG 1 cut(s) 530
MwoI GCNNNNNNNGC 2 cut(s) 353, 551
NciI CCSGG 1 cut(s) 478
NcoI CCATGG 1 cut(s) 376
NdeII GATC 1 cut(s) 438
NlaIII CATG 3 cut(s) 14, 380, 424
NlaIV GGNNCC 1 cut(s) 87
NspI RCATGY 2 cut(s) 14, 424
PciI ACATGT 1 cut(s) 10
PflMI CCANNNNNTGG 1 cut(s) 382
PkrI GCNGC 3 cut(s) 49, 226, 452
PscI ACATGT 1 cut(s) 10
Psp6I CCWGG 1 cut(s) 528
PspGI CCWGG 1 cut(s) 528
PspN4I GGNNCC 1 cut(s) 87
PsrI GAACNNNNNNTAC 2 cut(s) 495, 527
PstI CTGCAG 1 cut(s) 298
RsaI GTAC 3 cut(s) 87, 147, 404
RsaNI GTAC 3 cut(s) 86, 146, 403
SaqAI TTAA 1 cut(s) 36
SatI GCNGC 3 cut(s) 48, 225, 451
Sau3AI GATC 1 cut(s) 438
SbfI CCTGCAGG 1 cut(s) 298
ScrFI CCNGG 2 cut(s) 478, 530
SdaI CCTGCAGG 1 cut(s) 298
SduI GDGCHC 1 cut(s) 130
SfaNI GCATC 3 cut(s) 59, 166, 238
SfcI CTRYAG 3 cut(s) 294, 307, 512
SmlI CTYRAG 2 cut(s) 321, 563
SmoI CTYRAG 2 cut(s) 321, 563
Sse8387I CCTGCAGG 1 cut(s) 298
Sse9I AATT 2 cut(s) 300, 396
SsiI CCGC 1 cut(s) 345
SspMI CTAG 1 cut(s) 207
StyD4I CCNGG 2 cut(s) 476, 528
StyI CCWWGG 1 cut(s) 376
TaaI ACNGT 3 cut(s) 192, 231, 279
TaqI TCGA 1 cut(s) 507
TasI AATT 2 cut(s) 300, 396
Tru1I TTAA 1 cut(s) 36
Tru9I TTAA 1 cut(s) 36
TscAI CASTG 2 cut(s) 102, 319
TseI GCWGC 3 cut(s) 47, 224, 450
TspRI CASTG 2 cut(s) 102, 319
Van91I CCANNNNNTGG 1 cut(s) 382
VneI GTGCAC 1 cut(s) 126
XapI RAATTY 1 cut(s) 300
XceI RCATGY 2 cut(s) 14, 424
XspI CTAG 1 cut(s) 207
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.