Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010203.1

Orthogroup ID

OG0000925

Physical Location & Seq

Genomic Coordinates Reverse (-)

23129 .. 23806

Gene Structure 678 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010203.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ctgaacaattccacacctaaaccagaggccatcattactccttttgatgaatctcaggttcaagcagctgtaatttgctccaagaaaagtggcatacaaataagaatccgaagcgggggtcatgattattacgagggcctatcttatgtgtctagagctcctttcatcatcattgaccttttcaatctccgttccatcgatgttgatataacgaatgagagtgcttgggtcaaatcaggcgctactcttggagagttgtattacaacattgcacagaagagtaaagtctatgcctttccagcagggacttgtcccaccgttggtgctgggggacacatcagtggaggtggagttggtaccatattcagaaaatatggtctagcatctgacaatgtcattgatgctagaattgtagatgttaatggcagaattctagacagaaagtccatgggagaagagctcttttgggctatcagaggaggaggatcaagctttggagtcattctagcatggaaacttagactggttcctgttcccccaactgtaacagtttgcgacgttacaaagacaaaagaacaaggtgcaaccaaatttcttttgaaatggcaaaacattgcagacaagcttcctgaagaccttttcctacattcagttgtaggaagtagtgacaacacttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

BBE FAD_binding_4

Protein Analysis

225

Amino Acids

24.35

Weight (kDa)

8.4

Isoelectric Point (pI)

35.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000925)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20820 AT5G44360 AT5G44360 AT5G44410 AT5G44440 AT5G44440
fragaria_vesca	FvH4_3g10860 FvH4_3g10930 FvH4_3g10940 FvH4_3g10940 FvH4_3g10941
malus_domestica	MD05G1267700.v1.1 MD05G1267800.v1.1 MD05G1267900.v1.1 MD05G1268000.v1.1 MD05G1268100.v1.1 MD05G1268200.v1.1 MD10G1244300.v1.1
prunus_persica	Prupe.4G092500_v2.0.a1 Prupe.4G096500_v2.0.a1 Prupe.4G096600_v2.0.a1 Prupe.4G096700_v2.0.a1 Prupe.4G096900_v2.0.a1 Prupe.4G097000_v2.0.a1 Prupe.4G097100_v2.0.a1 Prupe.4G097200_v2.0.a1 Prupe.4G097300_v2.0.a1 Prupe.4G097500_v2.0.a1 Prupe.4G097700_v2.0.a1 Prupe.4G097800_v2.0.a1 Prupe.4G098200_v2.0.a1
pyrus_communis	pycom05g25090 pycom05g25120 pycom10g20430 pycom10g20480 pycom10g20490
rosa_chinensis	RchiOBHm_Chr4g0431071 RchiOBHm_Chr4g0431081 RchiOBHm_Chr5g0017651 RchiOBHm_Chr5g0017661 RchiOBHm_Chr5g0017681 RchiOBHm_Chr5g0017691
rosa_laevigata	RLG00000006927 RLG00000032303 RLG00000032304 RLG00000032305
rosa_multiflora	Rmu_sc0000346.1_g000001 Rmu_sc0003415.1_g000006 Rmu_sc0003415.1_g000009 Rmu_sc0003592.1_g000009 Rmu_sc0005192.1_g000001 Rmu_sc0009555.1_g000002 Rmu_sc0010203.1_g000009
rosa_roxburghii	Rroxscaffold_1G00059800 Rroxscaffold_1G00059820
rosa_rugosa	Rorug05G0037300 Rorug05G0037300 Rorug05G0037300 Rorug05G0037400 Rorug05G0038600
rosa_samantha	Rh5BG129000
rosa_wichuraiana	Rw5G011340 Rw5G011350 Rw5G011430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	356
AccB1I	GGYRCC	1 cut(s)	356
AciI	CCGC	1 cut(s)	114
AclWI	GGATC	1 cut(s)	493
AcsI	RAATTY	2 cut(s)	429, 590
AcuI	CTGAAG	1 cut(s)	651
AfaI	GTAC	1 cut(s)	358
AfiI	CCNNNNNNNGG	2 cut(s)	115, 320
AgsI	TTSAA	3 cut(s)	62, 184, 601
AhdI	GACNNNNNGTC	1 cut(s)	442
AleI	CACNNNNGTG	1 cut(s)	339
AluBI	AGCT	5 cut(s)	68, 158, 460, 492, 625
AluI	AGCT	5 cut(s)	68, 158, 460, 492, 625
Alw21I	GWGCWC	2 cut(s)	160, 462
AlwI	GGATC	1 cut(s)	493
AoxI	GGCC	2 cut(s)	27, 136
ApeKI	GCWGC	1 cut(s)	65
ApoI	RAATTY	2 cut(s)	429, 590
ArsI	GACNNNNNNTTYG	2 cut(s)	103, 135
Asp718I	GGTACC	1 cut(s)	356
AspLEI	GCGC	1 cut(s)	242
AspS9I	GGNCC	1 cut(s)	136
BanI	GGYRCC	1 cut(s)	356
BanII	GRGCYC	2 cut(s)	160, 462
BbsI	GAAGAC	1 cut(s)	639
Bbv12I	GWGCWC	2 cut(s)	160, 462
BbvI	GCAGC	1 cut(s)	77
BccI	CCATC	2 cut(s)	38, 203
BfaI	CTAG	5 cut(s)	153, 380, 405, 434, 506
BfoI	RGCGCY	1 cut(s)	243
BisI	GCNGC	1 cut(s)	66
BlsI	GCNGC	1 cut(s)	67
BmeRI	GACNNNNNGTC	1 cut(s)	442
BmgT120I	GGNCC	1 cut(s)	136
BmiI	GGNNCC	2 cut(s)	358, 528
BmsI	GCATC	2 cut(s)	391, 392
BpiI	GAAGAC	1 cut(s)	639
BplI	GAGNNNNNCTC	2 cut(s)	444, 476
Bsa29I	ATCGAT	1 cut(s)	198
BsaJI	CCNNGG	1 cut(s)	447
BsaXI	ACNNNNNCTCC	2 cut(s)	336, 366
Bsc4I	CCNNNNNNNGG	2 cut(s)	115, 320
Bse1I	ACTGG	1 cut(s)	528
Bse3DI	GCAATG	2 cut(s)	267, 612
BseCI	ATCGAT	1 cut(s)	198
BseDI	CCNNGG	1 cut(s)	447
BseLI	CCNNNNNNNGG	2 cut(s)	115, 320
BseMI	GCAATG	2 cut(s)	267, 612
BseMII	CTCAG	1 cut(s)	68
BseNI	ACTGG	1 cut(s)	528
BseRI	GAGGAG	2 cut(s)	492, 495
BseXI	GCAGC	1 cut(s)	77
BseYI	CCCAGC	1 cut(s)	326
BshFI	GGCC	2 cut(s)	29, 138
BshNI	GGYRCC	1 cut(s)	356
BshVI	ATCGAT	1 cut(s)	198
BsiHKAI	GWGCWC	2 cut(s)	160, 462
BslFI	GGGAC	3 cut(s)	297, 319, 345
BslI	CCNNNNNNNGG	2 cut(s)	115, 320
BsmFI	GGGAC	3 cut(s)	297, 319, 345
BsnI	GGCC	2 cut(s)	29, 138
Bsp1286I	GDGCHC	2 cut(s)	160, 462
Bsp143I	GATC	1 cut(s)	485
Bsp19I	CCATGG	1 cut(s)	447
BspACI	CCGC	1 cut(s)	114
BspANI	GGCC	2 cut(s)	29, 138
BspCNI	CTCAG	1 cut(s)	67
BspDI	ATCGAT	1 cut(s)	198
BspHI	TCATGA	1 cut(s)	121
BspLI	GGNNCC	2 cut(s)	358, 528
BspPI	GGATC	1 cut(s)	493
BspQI	GCTCTTC	1 cut(s)	450
BspT107I	GGYRCC	1 cut(s)	356
BsrDI	GCAATG	2 cut(s)	267, 612
BsrI	ACTGG	1 cut(s)	528
BssECI	CCNNGG	1 cut(s)	447
BssMI	GATC	1 cut(s)	485
BssT1I	CCWWGG	1 cut(s)	447
Bst4CI	ACNGT	3 cut(s)	319, 544, 550
Bst6I	CTCTTC	2 cut(s)	272, 450
BstDEI	CTNAG	2 cut(s)	54, 518
BstDSI	CCRYGG	1 cut(s)	447
BstH2I	RGCGCY	1 cut(s)	243
BstHHI	GCGC	1 cut(s)	242
BstKTI	GATC	1 cut(s)	488
BstMBI	GATC	1 cut(s)	485
BstMWI	GCNNNNNNNGC	1 cut(s)	299
BstV1I	GCAGC	1 cut(s)	77
BstV2I	GAAGAC	1 cut(s)	639
Bsu15I	ATCGAT	1 cut(s)	198
BsuRI	GGCC	2 cut(s)	29, 138
BsuTUI	ATCGAT	1 cut(s)	198
BtgI	CCRYGG	1 cut(s)	447
BtsIMutI	CAGTG	1 cut(s)	346
CciI	TCATGA	1 cut(s)	121
CfoI	GCGC	1 cut(s)	242
Cfr13I	GGNCC	1 cut(s)	136
ClaI	ATCGAT	1 cut(s)	198
Csp6I	GTAC	1 cut(s)	357
CspCI	CAANNNNNGTGG	2 cut(s)	70, 105
CviAII	CATG	3 cut(s)	122, 448, 510
CviJI	RGCY	8 cut(s)	29, 68, 138, 158, 460, 470, 492, 625
CviKI_1	RGCY	8 cut(s)	29, 68, 138, 158, 460, 470, 492, 625
CviQI	GTAC	1 cut(s)	357
DdeI	CTNAG	2 cut(s)	54, 518
DpnI	GATC	1 cut(s)	487
DpnII	GATC	1 cut(s)	485
DriI	GACNNNNNGTC	1 cut(s)	442
Eam1104I	CTCTTC	2 cut(s)	272, 450
Eam1105I	GACNNNNNGTC	1 cut(s)	442
EarI	CTCTTC	2 cut(s)	272, 450
Ecl136II	GAGCTC	2 cut(s)	158, 460
Eco130I	CCWWGG	1 cut(s)	447
Eco24I	GRGCYC	2 cut(s)	160, 462
Eco53kI	GAGCTC	2 cut(s)	158, 460
Eco57I	CTGAAG	1 cut(s)	651
EcoICRI	GAGCTC	2 cut(s)	158, 460
EcoO109I	RGGNCCY	1 cut(s)	136
EcoRI	GAATTC	1 cut(s)	429
EcoT14I	CCWWGG	1 cut(s)	447
EcoT38I	GRGCYC	2 cut(s)	160, 462
ErhI	CCWWGG	1 cut(s)	447
FaeI	CATG	3 cut(s)	125, 451, 513
FaiI	YATR	9 cut(s)	95, 123, 147, 209, 291, 362, 375, 449, 511
FaqI	GGGAC	3 cut(s)	297, 319, 345
FatI	CATG	3 cut(s)	121, 447, 509
FauI	CCCGC	1 cut(s)	107
Fnu4HI	GCNGC	1 cut(s)	66
FriOI	GRGCYC	2 cut(s)	160, 462
Fsp4HI	GCNGC	1 cut(s)	66
FspBI	CTAG	5 cut(s)	153, 380, 405, 434, 506
GlaI	GCGC	1 cut(s)	241
GluI	GCNGC	1 cut(s)	66
GsaI	CCCAGC	1 cut(s)	330
HaeII	RGCGCY	1 cut(s)	243
HaeIII	GGCC	2 cut(s)	29, 138
HhaI	GCGC	1 cut(s)	242
Hin1II	CATG	3 cut(s)	125, 451, 513
Hin6I	GCGC	1 cut(s)	240
HinP1I	GCGC	1 cut(s)	240
HindIII	AAGCTT	2 cut(s)	490, 623
HinfI	GANTC	3 cut(s)	50, 105, 498
Hpy188I	TCNGA	4 cut(s)	110, 368, 388, 476
Hpy188III	TCNNGA	4 cut(s)	122, 153, 434, 629
Hpy99I	CGWCG	1 cut(s)	560
HpyCH4III	ACNGT	3 cut(s)	319, 544, 550
HpyCH4IV	ACGT	1 cut(s)	558
HpyCH4V	TGCA	3 cut(s)	272, 584, 617
HpyF10VI	GCNNNNNNNGC	1 cut(s)	299
HpyF3I	CTNAG	2 cut(s)	54, 518
HpySE526I	ACGT	1 cut(s)	558
Hsp92II	CATG	3 cut(s)	125, 451, 513
HspAI	GCGC	1 cut(s)	240
KpnI	GGTACC	1 cut(s)	360
Kzo9I	GATC	1 cut(s)	485
LguI	GCTCTTC	1 cut(s)	450
LmnI	GCTCC	2 cut(s)	83, 163
LpnPI	CCDG	9 cut(s)	36, 41, 222, 288, 312, 312, 509, 543, 642
Lsp1109I	GCAGC	1 cut(s)	77
LweI	GCATC	2 cut(s)	391, 392
MaeI	CTAG	5 cut(s)	153, 380, 405, 434, 506
MaeII	ACGT	1 cut(s)	558
MaeIII	GTNAC	3 cut(s)	544, 559, 665
MalI	GATC	1 cut(s)	487
MboI	GATC	1 cut(s)	485
MboII	GAAGA	3 cut(s)	289, 467, 644
MhlI	GDGCHC	2 cut(s)	160, 462
MluCI	AATT	5 cut(s)	7, 72, 408, 429, 590
MlyI	GAGTC	1 cut(s)	507
MnlI	CCTC	6 cut(s)	19, 127, 338, 470, 473, 476
MseI	TTAA	1 cut(s)	420
MslI	CAYNNNNRTG	1 cut(s)	339
MspA1I	CMGCKG	1 cut(s)	68
MwoI	GCNNNNNNNGC	1 cut(s)	299
NcoI	CCATGG	1 cut(s)	447
NdeII	GATC	1 cut(s)	485
NlaIII	CATG	3 cut(s)	125, 451, 513
NlaIV	GGNNCC	2 cut(s)	358, 528
NmuCI	GTSAC	1 cut(s)	665
OliI	CACNNNNGTG	1 cut(s)	339
PagI	TCATGA	1 cut(s)	121
PciSI	GCTCTTC	1 cut(s)	450
PfeI	GAWTC	2 cut(s)	50, 105
PflFI	GACNNNGTC	1 cut(s)	392
PkrI	GCNGC	1 cut(s)	67
PleI	GAGTC	1 cut(s)	506
PpsI	GAGTC	1 cut(s)	506
Psp124BI	GAGCTC	2 cut(s)	160, 462
PspFI	CCCAGC	1 cut(s)	326
PspN4I	GGNNCC	2 cut(s)	358, 528
PspPI	GGNCC	1 cut(s)	136
PsyI	GACNNNGTC	1 cut(s)	392
PvuII	CAGCTG	1 cut(s)	68
RsaI	GTAC	1 cut(s)	358
RsaNI	GTAC	1 cut(s)	357
RseI	CAYNNNNRTG	1 cut(s)	339
SacI	GAGCTC	2 cut(s)	160, 462
SapI	GCTCTTC	1 cut(s)	450
SaqAI	TTAA	1 cut(s)	420
SatI	GCNGC	1 cut(s)	66
Sau3AI	GATC	1 cut(s)	485
Sau96I	GGNCC	1 cut(s)	136
SchI	GAGTC	1 cut(s)	507
SduI	GDGCHC	2 cut(s)	160, 462
SfaNI	GCATC	2 cut(s)	391, 392
SmiMI	CAYNNNNRTG	1 cut(s)	339
Sse9I	AATT	5 cut(s)	7, 72, 408, 429, 590
SsiI	CCGC	1 cut(s)	114
SspMI	CTAG	5 cut(s)	153, 380, 405, 434, 506
SstI	GAGCTC	2 cut(s)	160, 462
StyI	CCWWGG	1 cut(s)	447
TaaI	ACNGT	3 cut(s)	319, 544, 550
TaiI	ACGT	1 cut(s)	561
TaqI	TCGA	1 cut(s)	198
TasI	AATT	5 cut(s)	7, 72, 408, 429, 590
TfiI	GAWTC	2 cut(s)	50, 105
Tru1I	TTAA	1 cut(s)	420
Tru9I	TTAA	1 cut(s)	420
TscAI	CASTG	1 cut(s)	346
TseFI	GTSAC	1 cut(s)	665
TseI	GCWGC	1 cut(s)	65
Tsp45I	GTSAC	1 cut(s)	665
TspDTI	ATGAA	2 cut(s)	63, 154
TspGWI	ACGGA	1 cut(s)	179
TspRI	CASTG	1 cut(s)	346
Tth111I	GACNNNGTC	1 cut(s)	392
XapI	RAATTY	2 cut(s)	429, 590
XbaI	TCTAGA	2 cut(s)	152, 433
XspI	CTAG	5 cut(s)	153, 380, 405, 434, 506

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.