Prupe.4G096600_v2.0.a1

Belongs to the oxygen-dependent FAD-linked oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0000925
Physical Location & Seq
Reverse (-)
4852684 .. 4854290
1607 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G096600.1

Sequence Viewer

Length: 1575 bp
ATGAAACTACTTCCTCTACTTTTCATCCTTTTCCACTCAGTTTGTTCCACAACTTCAAGTTCAGCTGCAGAAAGCTTTCTTCAATGTTTTGCCTCCCACATACAGCAATATAACTCTAGCAAAATCATTATCACCAAACACAGTTCCGCTTATTTCTCAGTCGTGCAGTCTTCCATACAAAACCTCAGATTCTTGACCAGTTCAACATCAAAACCAGAAGCTATCATTACTCCCTTTCATGACTCTCATGTTCAAGCGGCTGTAATTTGCTCCAAGAAAAAGGGCCTACTAATCAGAATCCGAAGCGGGGGCCATGACTACGAGGGCCAATCTTATGTATCCAGAGCTCCTTTTGTCATCATTGATCTTTTCAATCTTCGATCTATCGATGTTGATATAGAAAATGAGAGTGCTTGGGTTGAATCCGGTGCTACTCTTGGAGAGTTGTATTACAGAACCGCAGAAAAAAGTAAGGCTTATGGATTTCCAGCAGGGTCATGTCCTACCATAGGTGTGGGGGGACATATTAGTGGAGGTGGATTCGGTACCTTGTTTAGGAAGTATGGTCTGGCAGCTGACAATGTCCTTGATGCTAAAATTGTCGACGTTAATGGCAGAATTCTTGACAGAAAATCCATGGGAGAAGAACTCTTTTGGGCTATTAGAGGAGGGGGAGGCTCAAGCTTTGGAGTCATTCTGGCATGGAAACTTAGACTGGTTCCTGTTCCTCCATCTGTTACAGTTTTCAGATTTTCAAAGACCGCAGAACAAGGGGCAACCAAACTTTTTTCTAAATGGCAAAACATTGCGGATAAGCTTCATGAAGACCTTTTCCTACATACAGTCATAGGTGTTGGAAATAAAGCTGGCACAAATGGTGGCAAAACTATTGTAATTGAATTCGGTTCATTGTTTCTTGGGCCGGTGGAGAAACTTCTCCTTTTGATGCAGGACAATTTTCCAGAGTTAAGTGTTGACCGCAGCGATTGCACTGAAATGAGTTGGATTGAGTCTGTTCTTTACTTTGATTACATCCCAAGAAACGAATCAGAAGCTTTGCTAAGTAGGACTATAAAATCTAAGAGCTTCTTCAAAGCGAAATCAGACTATGTGACTCAACCTATTTCAGAAGCTGGCTTGAAAGGTTTATGGCAAACACTAATTGAAGTGGGGGCTTACCTGATATTGACACCTTATGGTGGAAAAATGAGTGAGATTTCCAATTCAGAAATTCCTTTCCCACACAGAAGTGGAAATCTATTCAAAATCCAGTATATGGTCACTTGGAATGATTACAGGGAAACTGAGAAATATATTGGCTTGATGAGAAAGCTGTATGACTACATGGCACCATATGTTTCAAAGTTCCCAAGAGCTGCCTATTTGAATTATAAGGATCTTGACTTGGGGAGGAACAAGGATGTTCATACAAGCTATGCAGAAGCAAGCATCTGGGGTCTGAAGTATTTCAAGAACAACTTTAGGAGACTTGTTCATGTTAAGAGCTTAGTTGATCCTGGTAATTTCTTCAGGGATGAACAAAGCATCCCAGTGTGCCTATCTAGGAAGAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
BBE FAD_binding_4

Protein Analysis

525

Amino Acids

58.64

Weight (kDa)

9.04

Isoelectric Point (pI)

42.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1392
Acc65I GGTACC 1 cut(s) 545
AccB1I GGYRCC 2 cut(s) 545, 1348
AccB7I CCANNNNNTGG 1 cut(s) 1276
AccI GTMKAC 1 cut(s) 603
AciI CCGC 7 cut(s) 147, 257, 306, 459, 762, 809, 979
AclWI GGATC 2 cut(s) 1404, 1508
AcsI RAATTY 3 cut(s) 618, 899, 1230
AcuI CTGAAG 2 cut(s) 1481, 1513
AfaI GTAC 1 cut(s) 547
AfiI CCNNNNNNNGG 5 cut(s) 307, 509, 555, 1199, 1276
AjnI CCWGG 1 cut(s) 1516
AleI CACNNNNGTG 1 cut(s) 1248
AloI GAACNNNNNNTCC 2 cut(s) 1530, 1562
Alw21I GWGCWC 1 cut(s) 349
Alw26I GTCTC 1 cut(s) 1480
AlwI GGATC 2 cut(s) 1404, 1508
AlwNI CAGNNNCTG 1 cut(s) 1133
AoxI GGCC 4 cut(s) 283, 310, 325, 920
ApeKI GCWGC 4 cut(s) 65, 572, 981, 1376
ApoI RAATTY 3 cut(s) 618, 899, 1230
Asp700I GAANNNNTTC 2 cut(s) 75, 1466
Asp718I GGTACC 1 cut(s) 545
AspS9I GGNCC 4 cut(s) 283, 310, 325, 920
AsuHPI GGTGA 1 cut(s) 124
BanI GGYRCC 2 cut(s) 545, 1348
BanII GRGCYC 1 cut(s) 349
BbsI GAAGAC 2 cut(s) 162, 831
Bbv12I GWGCWC 1 cut(s) 349
BbvI GCAGC 4 cut(s) 52, 584, 993, 1363
BccI CCATC 1 cut(s) 739
BciT130I CCWGG 1 cut(s) 1518
BciVI GTATCC 1 cut(s) 349
BcoDI GTCTC 1 cut(s) 1480
BfaI CTAG 3 cut(s) 117, 1563, 1573
BfmI CTRYAG 1 cut(s) 66
BfuI GTATCC 1 cut(s) 349
BisI GCNGC 5 cut(s) 66, 258, 573, 982, 1377
BlsI GCNGC 5 cut(s) 67, 259, 574, 983, 1378
Bme1390I CCNGG 1 cut(s) 1518
BmgT120I GGNCC 4 cut(s) 283, 310, 325, 920
BmiI GGNNCC 4 cut(s) 311, 547, 720, 1350
BmrFI CCNGG 1 cut(s) 1518
BmrI ACTGGG 1 cut(s) 1544
BmsI GCATC 4 cut(s) 580, 936, 1458, 1554
BmuI ACTGGG 1 cut(s) 1544
BpiI GAAGAC 2 cut(s) 162, 831
BplI GAGNNNNNCTC 2 cut(s) 633, 665
BpuEI CTTGAG 1 cut(s) 664
Bsa29I ATCGAT 1 cut(s) 387
BsaJI CCNNGG 1 cut(s) 636
BsaWI WCCGGW 1 cut(s) 425
Bsc4I CCNNNNNNNGG 5 cut(s) 307, 509, 555, 1199, 1276
Bse118I RCCGGY 1 cut(s) 922
Bse1I ACTGG 4 cut(s) 198, 720, 1270, 1550
Bse3DI GCAATG 1 cut(s) 804
BseBI CCWGG 1 cut(s) 1518
BseCI ATCGAT 1 cut(s) 387
BseDI CCNNGG 1 cut(s) 636
BseGI GGATG 5 cut(s) 24, 1032, 1426, 1540, 1545
BseLI CCNNNNNNNGG 5 cut(s) 307, 509, 555, 1199, 1276
BseMI GCAATG 1 cut(s) 804
BseMII CTCAG 4 cut(s) 51, 171, 199, 1296
BseNI ACTGG 4 cut(s) 198, 720, 1270, 1550
BseRI GAGGAG 1 cut(s) 681
BseXI GCAGC 4 cut(s) 52, 584, 993, 1363
BsgI GTGCAG 1 cut(s) 185
BshFI GGCC 4 cut(s) 285, 312, 327, 922
BshNI GGYRCC 2 cut(s) 545, 1348
BshVI ATCGAT 1 cut(s) 387
BsiHKAI GWGCWC 1 cut(s) 349
BsiSI CCGG 2 cut(s) 426, 923
BslFI GGGAC 1 cut(s) 534
BslI CCNNNNNNNGG 5 cut(s) 307, 509, 555, 1199, 1276
BsmAI GTCTC 1 cut(s) 1480
BsmFI GGGAC 1 cut(s) 534
BsnI GGCC 4 cut(s) 285, 312, 327, 922
Bsp1286I GDGCHC 1 cut(s) 349
Bsp143I GATC 4 cut(s) 364, 380, 1396, 1513
Bsp19I CCATGG 1 cut(s) 636
BspACI CCGC 7 cut(s) 147, 257, 306, 459, 762, 809, 979
BspANI GGCC 4 cut(s) 285, 312, 327, 922
BspCNI CTCAG 4 cut(s) 50, 170, 198, 1297
BspDI ATCGAT 1 cut(s) 387
BspHI TCATGA 2 cut(s) 238, 820
BspLI GGNNCC 4 cut(s) 311, 547, 720, 1350
BspMAI CTGCAG 1 cut(s) 70
BspPI GGATC 2 cut(s) 1404, 1508
BspT107I GGYRCC 2 cut(s) 545, 1348
BsrDI GCAATG 1 cut(s) 804
BsrFI RCCGGY 1 cut(s) 922
BsrI ACTGG 4 cut(s) 198, 720, 1270, 1550
BssAI RCCGGY 1 cut(s) 922
BssECI CCNNGG 1 cut(s) 636
BssMI GATC 4 cut(s) 364, 380, 1396, 1513
BssT1I CCWWGG 1 cut(s) 636
Bst2UI CCWGG 1 cut(s) 1518
Bst4CI ACNGT 3 cut(s) 143, 742, 844
BstAPI GCANNNNNTGC 1 cut(s) 987
BstC8I GCNNGC 3 cut(s) 868, 1135, 1447
BstDEI CTNAG 8 cut(s) 37, 157, 185, 710, 1061, 1080, 1305, 1507
BstDSI CCRYGG 1 cut(s) 636
BstENI CCTNNNNNAGG 2 cut(s) 507, 553
BstF5I GGATG 5 cut(s) 24, 1032, 1426, 1540, 1545
BstKTI GATC 4 cut(s) 367, 383, 1399, 1516
BstMAI GTCTC 1 cut(s) 1480
BstMBI GATC 4 cut(s) 364, 380, 1396, 1513
BstMWI GCNNNNNNNGC 1 cut(s) 987
BstNI CCWGG 1 cut(s) 1518
BstSCI CCNGG 1 cut(s) 1516
BstSFI CTRYAG 1 cut(s) 66
BstV1I GCAGC 4 cut(s) 52, 584, 993, 1363
BstV2I GAAGAC 2 cut(s) 162, 831
BstX2I RGATCY 1 cut(s) 1396
BstXI CCANNNNNNTGG 1 cut(s) 514
BstYI RGATCY 1 cut(s) 1396
Bsu15I ATCGAT 1 cut(s) 387
BsuI GTATCC 1 cut(s) 349
BsuRI GGCC 4 cut(s) 285, 312, 327, 922
BsuTUI ATCGAT 1 cut(s) 387
BtgI CCRYGG 1 cut(s) 636
BtsCI GGATG 5 cut(s) 24, 1032, 1426, 1540, 1545
BtsIMutI CAGTG 2 cut(s) 990, 1557
Cac8I GCNNGC 3 cut(s) 868, 1135, 1447
CaiI CAGNNNCTG 1 cut(s) 1133
CciI TCATGA 2 cut(s) 238, 820
Cfr10I RCCGGY 1 cut(s) 922
Cfr13I GGNCC 4 cut(s) 283, 310, 325, 920
ClaI ATCGAT 1 cut(s) 387
Csp6I GTAC 1 cut(s) 546
CspCI CAANNNNNGTGG 2 cut(s) 23, 58
CviAII CATG 9 cut(s) 239, 248, 314, 498, 637, 702, 821, 1345, 1496
CviQI GTAC 1 cut(s) 546
DdeI CTNAG 8 cut(s) 37, 157, 185, 710, 1061, 1080, 1305, 1507
DpnI GATC 4 cut(s) 366, 382, 1398, 1515
DpnII GATC 4 cut(s) 364, 380, 1396, 1513
Ecl136II GAGCTC 1 cut(s) 347
Eco130I CCWWGG 1 cut(s) 636
Eco24I GRGCYC 1 cut(s) 349
Eco53kI GAGCTC 1 cut(s) 347
Eco57I CTGAAG 2 cut(s) 1481, 1513
EcoICRI GAGCTC 1 cut(s) 347
EcoNI CCTNNNNNAGG 2 cut(s) 507, 553
EcoO109I RGGNCCY 1 cut(s) 283
EcoRI GAATTC 2 cut(s) 618, 899
EcoRII CCWGG 1 cut(s) 1516
EcoT14I CCWWGG 1 cut(s) 636
EcoT38I GRGCYC 1 cut(s) 349
ErhI CCWWGG 1 cut(s) 636
FaeI CATG 9 cut(s) 242, 251, 317, 501, 640, 705, 824, 1348, 1499
FalI AAGNNNNNCTT 6 cut(s) 460, 492, 1073, 1105, 1463, 1495
FaqI GGGAC 1 cut(s) 534
FatI CATG 9 cut(s) 238, 247, 313, 497, 636, 701, 820, 1344, 1495
FauI CCCGC 1 cut(s) 299
FauNDI CATATG 1 cut(s) 1354
FblI GTMKAC 1 cut(s) 603
Fnu4HI GCNGC 5 cut(s) 66, 258, 573, 982, 1377
FokI GGATG 5 cut(s) 11, 1019, 1433, 1532, 1547
FriOI GRGCYC 1 cut(s) 349
Fsp4HI GCNGC 5 cut(s) 66, 258, 573, 982, 1377
FspBI CTAG 3 cut(s) 117, 1563, 1573
GluI GCNGC 5 cut(s) 66, 258, 573, 982, 1377
HaeIII GGCC 4 cut(s) 285, 312, 327, 922
HapII CCGG 2 cut(s) 426, 923
Hin1II CATG 9 cut(s) 242, 251, 317, 501, 640, 705, 824, 1348, 1499
HincII GTYRAC 2 cut(s) 604, 976
HindII GTYRAC 2 cut(s) 604, 976
HindIII AAGCTT 4 cut(s) 73, 682, 815, 1053
HinfI GANTC 9 cut(s) 189, 242, 297, 422, 540, 690, 1010, 1046, 1114
HpaII CCGG 2 cut(s) 426, 923
HphI GGTGA 1 cut(s) 124
Hpy166II GTNNAC 2 cut(s) 604, 976
Hpy188I TCNGA 9 cut(s) 188, 296, 302, 749, 1051, 1105, 1129, 1228, 1461
Hpy188III TCNNGA 8 cut(s) 193, 239, 342, 623, 821, 962, 1400, 1471
Hpy8I GTNNAC 2 cut(s) 604, 976
Hpy99I CGWCG 1 cut(s) 608
HpyCH4III ACNGT 3 cut(s) 143, 742, 844
HpyCH4IV ACGT 1 cut(s) 606
HpyCH4V TGCA 5 cut(s) 68, 166, 949, 990, 1439
HpyF10VI GCNNNNNNNGC 1 cut(s) 987
HpyF3I CTNAG 8 cut(s) 37, 157, 185, 710, 1061, 1080, 1305, 1507
HpySE526I ACGT 1 cut(s) 606
Hsp92II CATG 9 cut(s) 242, 251, 317, 501, 640, 705, 824, 1348, 1499
KpnI GGTACC 1 cut(s) 549
Kzo9I GATC 4 cut(s) 364, 380, 1396, 1513
LmnI GCTCC 2 cut(s) 275, 352
Lsp1109I GCAGC 4 cut(s) 52, 584, 993, 1363
LweI GCATC 4 cut(s) 580, 936, 1458, 1554
MaeI CTAG 3 cut(s) 117, 1563, 1573
MaeII ACGT 1 cut(s) 606
MaeIII GTNAC 3 cut(s) 736, 1111, 1279
MalI GATC 4 cut(s) 366, 382, 1398, 1515
MboI GATC 4 cut(s) 364, 380, 1396, 1513
MboII GAAGA 7 cut(s) 71, 162, 368, 656, 836, 1081, 1519
MflI RGATCY 1 cut(s) 1396
MhlI GDGCHC 1 cut(s) 349
MlyI GAGTC 4 cut(s) 236, 699, 1019, 1108
MmeI TCCRAC 2 cut(s) 835, 983
MroXI GAANNNNTTC 2 cut(s) 75, 1466
MseI TTAA 3 cut(s) 609, 968, 1500
MslI CAYNNNNRTG 5 cut(s) 512, 528, 995, 1248, 1550
MspA1I CMGCKG 2 cut(s) 65, 575
MspI CCGG 2 cut(s) 426, 923
MspR9I CCNGG 1 cut(s) 1518
MvaI CCWGG 1 cut(s) 1518
MwoI GCNNNNNNNGC 1 cut(s) 987
NcoI CCATGG 1 cut(s) 636
NdeI CATATG 1 cut(s) 1354
NdeII GATC 4 cut(s) 364, 380, 1396, 1513
NlaIII CATG 9 cut(s) 242, 251, 317, 501, 640, 705, 824, 1348, 1499
NlaIV GGNNCC 4 cut(s) 311, 547, 720, 1350
NmuCI GTSAC 2 cut(s) 1111, 1279
OliI CACNNNNGTG 1 cut(s) 1248
PagI TCATGA 2 cut(s) 238, 820
PdmI GAANNNNTTC 2 cut(s) 75, 1466
PfeI GAWTC 5 cut(s) 189, 297, 422, 540, 1046
PflFI GACNNNGTC 1 cut(s) 581
PflMI CCANNNNNTGG 1 cut(s) 1276
PkrI GCNGC 5 cut(s) 67, 259, 574, 983, 1378
PleI GAGTC 4 cut(s) 236, 698, 1018, 1108
PpsI GAGTC 4 cut(s) 236, 698, 1018, 1108
PsiI TTATAA 1 cut(s) 1392
Psp124BI GAGCTC 1 cut(s) 349
Psp6I CCWGG 1 cut(s) 1516
PspGI CCWGG 1 cut(s) 1516
PspN4I GGNNCC 4 cut(s) 311, 547, 720, 1350
PspPI GGNCC 4 cut(s) 283, 310, 325, 920
PstI CTGCAG 1 cut(s) 70
PstNI CAGNNNCTG 1 cut(s) 1133
PsuI RGATCY 1 cut(s) 1396
PsyI GACNNNGTC 1 cut(s) 581
PvuII CAGCTG 2 cut(s) 65, 575
RsaI GTAC 1 cut(s) 547
RsaNI GTAC 1 cut(s) 546
RseI CAYNNNNRTG 5 cut(s) 512, 528, 995, 1248, 1550
SacI GAGCTC 1 cut(s) 349
SalI GTCGAC 1 cut(s) 602
SaqAI TTAA 3 cut(s) 609, 968, 1500
SatI GCNGC 5 cut(s) 66, 258, 573, 982, 1377
Sau3AI GATC 4 cut(s) 364, 380, 1396, 1513
Sau96I GGNCC 4 cut(s) 283, 310, 325, 920
SchI GAGTC 4 cut(s) 236, 699, 1019, 1108
ScrFI CCNGG 1 cut(s) 1518
SduI GDGCHC 1 cut(s) 349
SfaNI GCATC 4 cut(s) 580, 936, 1458, 1554
SfcI CTRYAG 1 cut(s) 66
SmiMI CAYNNNNRTG 5 cut(s) 512, 528, 995, 1248, 1550
SmlI CTYRAG 1 cut(s) 679
SmoI CTYRAG 1 cut(s) 679
SsiI CCGC 7 cut(s) 147, 257, 306, 459, 762, 809, 979
SspMI CTAG 3 cut(s) 117, 1563, 1573
SstI GAGCTC 1 cut(s) 349
StyD4I CCNGG 1 cut(s) 1516
StyI CCWWGG 1 cut(s) 636
TaaI ACNGT 3 cut(s) 143, 742, 844
TaiI ACGT 1 cut(s) 609
TaqI TCGA 3 cut(s) 379, 387, 603
TauI GCSGC 1 cut(s) 260
TfiI GAWTC 5 cut(s) 189, 297, 422, 540, 1046
Tru1I TTAA 3 cut(s) 609, 968, 1500
Tru9I TTAA 3 cut(s) 609, 968, 1500
TscAI CASTG 2 cut(s) 997, 1557
TseFI GTSAC 2 cut(s) 1111, 1279
TseI GCWGC 4 cut(s) 65, 572, 981, 1376
Tsp45I GTSAC 2 cut(s) 1111, 1279
TspDTI ATGAA 9 cut(s) 13, 17, 227, 809, 837, 897, 1415, 1484, 1551
TspRI CASTG 2 cut(s) 997, 1557
Tth111I GACNNNGTC 1 cut(s) 581
Van91I CCANNNNNTGG 1 cut(s) 1276
XagI CCTNNNNNAGG 2 cut(s) 507, 553
XapI RAATTY 3 cut(s) 618, 899, 1230
XmiI GTMKAC 1 cut(s) 603
XmnI GAANNNNTTC 2 cut(s) 75, 1466
XspI CTAG 3 cut(s) 117, 1563, 1573
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.