FvH4_3g10930

Belongs to the oxygen-dependent FAD-linked oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000925
Physical Location & Seq
Reverse (-)
6472595 .. 6474213
1619 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g10930.t1

Sequence Viewer

Length: 1491 bp
ATGAATATGGAGACCTCTCATGCAAAGCTATTTCCCCTACTTTTCATCCTTCTCAACTCAGCTTGGTCCATAGCTTCAAGCTCCATTTCTGAAAGCTTTGTGCAATGCCTTTCCTCCCACATTCAGAACTCTAACTCCAGTAATGAAATCATTCTCACCAGAACCAGTTCAGCTTATCCTTCAGTGTTAGATTCTTCCATACAGAACCTCAGATTCTCGAACAATTCCACACCAAAACCAGAGGCCATCATAACTCCTTTTGATGAATCTCATGTTCAAGCAGCTGTAATTTGCTCCGAGAAAAAATGGCCTACAAATAAGAAGCCGAAGCGGGGGGCACGATTACGAGGGCCTATCTTATGTGCTACTCTTGGAGAGGTGTATTACAGCATTGCACAGAAGAGTAAAGTCTATGGCTTTCCAGCAGCAATTTGTCCCACCGTTGGTGTTGGGGGACATATCAGTGGAGGTGGAATGGGAACCATATTCCGAAAATATGGTCTAGCATCTGACAATGTCATTGATGCCAGAATTGTAGATGTTAATGGCAGAATTCTAGATAGAAAGTCCATGGGAGAAGAGCTTTTTTGGGCTATCAGAGGAGGAGGTGGATCAAGCTTTGGAGTCATTCTAGCATGGAAACTTAGACTGGTTCCTGTTCCCCCTGCTGTAACAGTTTGCCACATTACAAAGACAAAAGAACAAGACGCAACCAAACTTCTTTTGAAATGGCAAAACATTGCAGACAAGCTTCCTGAAGAACTTTTCATACGTCTAGTTATAAGAAGTGGTGACAAGACTATTATAGTTGAATTCGGTTCCTTGTTTCTTGGCCCGGTTGAGAAACTTTTCCATTTGATGCAGGACAACTTCCCAGAGTTGAGTTTAGGAAGAAGCCATTGCACCGAGATGAGTTGGATTCAGTCTGTTTTAGACTTTGCTGGCTACTCGATACACGAATCCTTAGAGATTTTGCTGAAGCGCCGGCAATTCAGCATTATCTTCAAAGCAAAATCAGACTTTGTGACTGAGCCCATCTCAGAAGCTGGCTTGGAAGGCTTATGGCAGAGGTTGGTTGAAGCAAACACATCCTTCATGATACTGACACCATATGGAGGAAAAATGAGTGAGATTGCTGATTCAGAAACTGCTTTCCCACATCGACGAGGAAACATATATGAAATCCAGTATATGGTTGTTTGGGATGATGGCAAGGATACTCAGAAGTATATTGGATTTATGAGAAGGTTGTATGCATACATGGCACCGTATGTTTCAAAGTCTCCTAGAGCTGCCTATCTGAATTATAGGGATCTTGATTTGGGGAGGAACAATAATGGCAATACAAGCTATGCACAAGCAAGCATTTGGGGTTTGAAGTACTTCAAGAACAACTTCAGGAAACTTGTTCATGTTAAGACCTTGGTTGATCCCGGCAACTTCTTTAGGAATGAGCAAAGCATCCCAGTGTTTTCATCCGGTAGAAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
BBE FAD_binding_4

Protein Analysis

497

Amino Acids

55.57

Weight (kDa)

9.3

Isoelectric Point (pI)

46.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAD_binding_4 PF01565 123 - 186 9.2e-09 FAD binding domain
BBE PF08031 432 - 489 1.8e-17 Berberine and berberine like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 782
AccB1I GGYRCC 1 cut(s) 1264
AccB7I CCANNNNNTGG 1 cut(s) 1192
AciI CCGC 1 cut(s) 331
AclWI GGATC 3 cut(s) 619, 1320, 1424
AcsI RAATTY 2 cut(s) 552, 812
AcuI CTGAAG 4 cut(s) 165, 777, 998, 1381
AfaI GTAC 1 cut(s) 1382
AfiI CCNNNNNNNGG 4 cut(s) 332, 443, 1115, 1192
AgsI TTSAA 9 cut(s) 78, 278, 727, 812, 1006, 1079, 1278, 1378, 1387
AloI GAACNNNNNNTCC 2 cut(s) 119, 151
Alw26I GTCTC 2 cut(s) 5, 1287
AlwI GGATC 3 cut(s) 619, 1320, 1424
AlwNI CAGNNNCTG 2 cut(s) 1046, 1148
AoxI GGCC 4 cut(s) 243, 308, 350, 832
ApeKI GCWGC 3 cut(s) 281, 425, 1292
ApoI RAATTY 2 cut(s) 552, 812
ArsI GACNNNNNNTTYG 2 cut(s) 484, 516
Asp700I GAANNNNTTC 5 cut(s) 150, 166, 848, 1382, 1394
AspLEI GCGC 1 cut(s) 984
AspS9I GGNCC 3 cut(s) 66, 350, 833
AsuC2I CCSGG 2 cut(s) 836, 1434
AsuHPI GGTGA 2 cut(s) 148, 803
AvaII GGWCC 1 cut(s) 66
BaeGI GKGCMC 1 cut(s) 340
BanI GGYRCC 1 cut(s) 1264
BanII GRGCYC 1 cut(s) 1035
BbvI GCAGC 3 cut(s) 293, 437, 1279
BccI CCATC 3 cut(s) 254, 1043, 1202
BciVI GTATCC 1 cut(s) 1210
BcnI CCSGG 2 cut(s) 836, 1434
BcoDI GTCTC 2 cut(s) 5, 1287
BfaI CTAG 5 cut(s) 503, 557, 632, 776, 1287
BfoI RGCGCY 1 cut(s) 985
BfuI GTATCC 1 cut(s) 1210
BisI GCNGC 3 cut(s) 282, 426, 1293
BlsI GCNGC 3 cut(s) 283, 427, 1294
BmcAI AGTACT 1 cut(s) 1382
Bme1390I CCNGG 2 cut(s) 836, 1434
Bme18I GGWCC 1 cut(s) 66
BmgT120I GGNCC 3 cut(s) 66, 350, 833
BmiI GGNNCC 4 cut(s) 481, 654, 820, 1266
BmrFI CCNGG 2 cut(s) 836, 1434
BmrI ACTGGG 1 cut(s) 1460
BmsI GCATC 4 cut(s) 514, 515, 849, 1470
BmuI ACTGGG 1 cut(s) 1460
BplI GAGNNNNNCTC 2 cut(s) 1022, 1054
BpmI CTGGAG 1 cut(s) 121
BpuMI CCSGG 2 cut(s) 836, 1434
BsaI GGTCTC 1 cut(s) 5
BsaJI CCNNGG 2 cut(s) 570, 1422
BsaWI WCCGGW 1 cut(s) 1478
BsaXI ACNNNNNCTCC 2 cut(s) 119, 149
Bsc4I CCNNNNNNNGG 4 cut(s) 332, 443, 1115, 1192
Bse118I RCCGGY 1 cut(s) 984
Bse1I ACTGG 5 cut(s) 138, 165, 654, 1186, 1466
Bse3DI GCAATG 4 cut(s) 110, 390, 738, 898
BseDI CCNNGG 2 cut(s) 570, 1422
BseGI GGATG 5 cut(s) 45, 1088, 1210, 1461, 1475
BseLI CCNNNNNNNGG 4 cut(s) 332, 443, 1115, 1192
BseMI GCAATG 4 cut(s) 110, 390, 738, 898
BseMII CTCAG 5 cut(s) 72, 223, 1020, 1053, 1235
BseNI ACTGG 5 cut(s) 138, 165, 654, 1186, 1466
BseRI GAGGAG 2 cut(s) 615, 618
BseSI GKGCMC 1 cut(s) 340
BseXI GCAGC 3 cut(s) 293, 437, 1279
BshFI GGCC 4 cut(s) 245, 310, 352, 834
BshNI GGYRCC 1 cut(s) 1264
BsiSI CCGG 4 cut(s) 836, 985, 1434, 1479
BslFI GGGAC 2 cut(s) 420, 468
BslI CCNNNNNNNGG 4 cut(s) 332, 443, 1115, 1192
BsmAI GTCTC 2 cut(s) 5, 1287
BsmFI GGGAC 2 cut(s) 420, 468
BsnI GGCC 4 cut(s) 245, 310, 352, 834
Bso31I GGTCTC 1 cut(s) 5
Bsp1286I GDGCHC 2 cut(s) 340, 1035
Bsp143I GATC 3 cut(s) 611, 1312, 1429
Bsp19I CCATGG 1 cut(s) 570
BspACI CCGC 1 cut(s) 331
BspANI GGCC 4 cut(s) 245, 310, 352, 834
BspCNI CTCAG 5 cut(s) 71, 222, 1021, 1052, 1234
BspHI TCATGA 1 cut(s) 1095
BspLI GGNNCC 4 cut(s) 481, 654, 820, 1266
BspPI GGATC 3 cut(s) 619, 1320, 1424
BspQI GCTCTTC 1 cut(s) 573
BspT107I GGYRCC 1 cut(s) 1264
BspTNI GGTCTC 1 cut(s) 5
BsrDI GCAATG 4 cut(s) 110, 390, 738, 898
BsrFI RCCGGY 1 cut(s) 984
BsrI ACTGG 5 cut(s) 138, 165, 654, 1186, 1466
BssAI RCCGGY 1 cut(s) 984
BssECI CCNNGG 2 cut(s) 570, 1422
BssMI GATC 3 cut(s) 611, 1312, 1429
BssT1I CCWWGG 2 cut(s) 570, 1422
Bst4CI ACNGT 3 cut(s) 442, 676, 1269
Bst6I CTCTTC 2 cut(s) 395, 573
BstC8I GCNNGC 4 cut(s) 943, 986, 1048, 1363
BstDEI CTNAG 7 cut(s) 58, 209, 644, 964, 1029, 1039, 1221
BstDSI CCRYGG 1 cut(s) 570
BstF5I GGATG 5 cut(s) 45, 1088, 1210, 1461, 1475
BstH2I RGCGCY 1 cut(s) 985
BstHHI GCGC 1 cut(s) 984
BstKTI GATC 3 cut(s) 614, 1315, 1432
BstMAI GTCTC 2 cut(s) 5, 1287
BstMBI GATC 3 cut(s) 611, 1312, 1429
BstMWI GCNNNNNNNGC 3 cut(s) 1056, 1262, 1347
BstSCI CCNGG 2 cut(s) 834, 1432
BstSLI GKGCMC 1 cut(s) 340
BstV1I GCAGC 3 cut(s) 293, 437, 1279
BstX2I RGATCY 1 cut(s) 1312
BstYI RGATCY 1 cut(s) 1312
BsuI GTATCC 1 cut(s) 1210
BsuRI GGCC 4 cut(s) 245, 310, 352, 834
BtgI CCRYGG 1 cut(s) 570
BtsCI GGATG 5 cut(s) 45, 1088, 1210, 1461, 1475
BtsIMutI CAGTG 3 cut(s) 189, 469, 1473
Cac8I GCNNGC 4 cut(s) 943, 986, 1048, 1363
CaiI CAGNNNCTG 2 cut(s) 1046, 1148
CciI TCATGA 1 cut(s) 1095
CfoI GCGC 1 cut(s) 984
Cfr10I RCCGGY 1 cut(s) 984
Cfr13I GGNCC 3 cut(s) 66, 350, 833
CseI GACGC 1 cut(s) 716
Csp6I GTAC 1 cut(s) 1381
CviAII CATG 7 cut(s) 20, 272, 571, 636, 1096, 1261, 1412
CviQI GTAC 1 cut(s) 1381
DdeI CTNAG 7 cut(s) 58, 209, 644, 964, 1029, 1039, 1221
DpnI GATC 3 cut(s) 613, 1314, 1431
DpnII GATC 3 cut(s) 611, 1312, 1429
Eam1104I CTCTTC 2 cut(s) 395, 573
EarI CTCTTC 2 cut(s) 395, 573
Eco130I CCWWGG 2 cut(s) 570, 1422
Eco24I GRGCYC 1 cut(s) 1035
Eco31I GGTCTC 1 cut(s) 5
Eco47I GGWCC 1 cut(s) 66
Eco57I CTGAAG 4 cut(s) 165, 777, 998, 1381
EcoO109I RGGNCCY 1 cut(s) 350
EcoRI GAATTC 2 cut(s) 552, 812
EcoT14I CCWWGG 2 cut(s) 570, 1422
EcoT22I ATGCAT 1 cut(s) 1258
EcoT38I GRGCYC 1 cut(s) 1035
ErhI CCWWGG 2 cut(s) 570, 1422
FaeI CATG 7 cut(s) 23, 275, 574, 639, 1099, 1264, 1415
FalI AAGNNNNNCTT 2 cut(s) 1379, 1411
FaqI GGGAC 2 cut(s) 420, 468
FatI CATG 7 cut(s) 19, 271, 570, 635, 1095, 1260, 1411
FauI CCCGC 1 cut(s) 324
FauNDI CATATG 1 cut(s) 1111
Fnu4HI GCNGC 3 cut(s) 282, 426, 1293
FokI GGATG 5 cut(s) 32, 1075, 1217, 1448, 1462
FriOI GRGCYC 1 cut(s) 1035
Fsp4HI GCNGC 3 cut(s) 282, 426, 1293
FspBI CTAG 5 cut(s) 503, 557, 632, 776, 1287
GlaI GCGC 1 cut(s) 983
GluI GCNGC 3 cut(s) 282, 426, 1293
GsuI CTGGAG 1 cut(s) 121
HaeII RGCGCY 1 cut(s) 985
HaeIII GGCC 4 cut(s) 245, 310, 352, 834
HapII CCGG 4 cut(s) 836, 985, 1434, 1479
HgaI GACGC 1 cut(s) 716
HhaI GCGC 1 cut(s) 984
Hin1II CATG 7 cut(s) 23, 275, 574, 639, 1099, 1264, 1415
Hin6I GCGC 1 cut(s) 982
HinP1I GCGC 1 cut(s) 982
HindIII AAGCTT 3 cut(s) 94, 616, 749
HinfI GANTC 7 cut(s) 191, 213, 266, 624, 919, 959, 1139
HpaII CCGG 4 cut(s) 836, 985, 1434, 1479
HphI GGTGA 2 cut(s) 148, 803
Hpy188III TCNNGA 7 cut(s) 217, 557, 755, 1096, 1316, 1387, 1399
Hpy99I CGWCG 1 cut(s) 1167
HpyAV CCTTC 5 cut(s) 59, 189, 1049, 1102, 1239
HpyCH4III ACNGT 3 cut(s) 442, 676, 1269
HpyCH4IV ACGT 1 cut(s) 772
HpyCH4V TGCA 8 cut(s) 23, 103, 395, 743, 862, 903, 1256, 1355
HpyF10VI GCNNNNNNNGC 3 cut(s) 1056, 1262, 1347
HpyF3I CTNAG 7 cut(s) 58, 209, 644, 964, 1029, 1039, 1221
HpySE526I ACGT 1 cut(s) 772
Hsp92II CATG 7 cut(s) 23, 275, 574, 639, 1099, 1264, 1415
HspAI GCGC 1 cut(s) 982
KroI GCCGGC 1 cut(s) 984
KroNI GCCGGC 1 cut(s) 986
Kzo9I GATC 3 cut(s) 611, 1312, 1429
LguI GCTCTTC 1 cut(s) 573
LmnI GCTCC 2 cut(s) 86, 299
Lsp1109I GCAGC 3 cut(s) 293, 437, 1279
LweI GCATC 4 cut(s) 514, 515, 849, 1470
MaeI CTAG 5 cut(s) 503, 557, 632, 776, 1287
MaeII ACGT 1 cut(s) 772
MaeIII GTNAC 3 cut(s) 670, 791, 1024
MalI GATC 3 cut(s) 613, 1314, 1431
MboI GATC 3 cut(s) 611, 1312, 1429
MboII GAAGA 6 cut(s) 186, 412, 590, 770, 903, 994
MflI RGATCY 1 cut(s) 1312
MhlI GDGCHC 2 cut(s) 340, 1035
MluCI AATT 8 cut(s) 223, 288, 429, 531, 552, 812, 989, 1303
MlyI GAGTC 1 cut(s) 633
MmeI TCCRAC 1 cut(s) 896
Mph1103I ATGCAT 1 cut(s) 1258
MroNI GCCGGC 1 cut(s) 984
MroXI GAANNNNTTC 5 cut(s) 150, 166, 848, 1382, 1394
MseI TTAA 2 cut(s) 543, 1416
MslI CAYNNNNRTG 3 cut(s) 462, 908, 1466
MspA1I CMGCKG 1 cut(s) 284
MspI CCGG 4 cut(s) 836, 985, 1434, 1479
MspR9I CCNGG 2 cut(s) 836, 1434
MwoI GCNNNNNNNGC 3 cut(s) 1056, 1262, 1347
NaeI GCCGGC 1 cut(s) 986
NciI CCSGG 2 cut(s) 836, 1434
NcoI CCATGG 1 cut(s) 570
NdeI CATATG 1 cut(s) 1111
NdeII GATC 3 cut(s) 611, 1312, 1429
NgoMIV GCCGGC 1 cut(s) 984
NlaIII CATG 7 cut(s) 23, 275, 574, 639, 1099, 1264, 1415
NlaIV GGNNCC 4 cut(s) 481, 654, 820, 1266
NmuCI GTSAC 2 cut(s) 791, 1024
NsiI ATGCAT 1 cut(s) 1258
PagI TCATGA 1 cut(s) 1095
PciSI GCTCTTC 1 cut(s) 573
PdiI GCCGGC 1 cut(s) 986
PdmI GAANNNNTTC 5 cut(s) 150, 166, 848, 1382, 1394
PfeI GAWTC 6 cut(s) 191, 213, 266, 919, 959, 1139
PflFI GACNNNGTC 1 cut(s) 515
PflMI CCANNNNNTGG 1 cut(s) 1192
PkrI GCNGC 3 cut(s) 283, 427, 1294
PleI GAGTC 1 cut(s) 632
PpsI GAGTC 1 cut(s) 632
PsiI TTATAA 1 cut(s) 782
PspN4I GGNNCC 4 cut(s) 481, 654, 820, 1266
PspPI GGNCC 3 cut(s) 66, 350, 833
PsrI GAACNNNNNNTAC 2 cut(s) 753, 785
PstNI CAGNNNCTG 2 cut(s) 1046, 1148
PsuI RGATCY 1 cut(s) 1312
PsyI GACNNNGTC 1 cut(s) 515
PvuII CAGCTG 1 cut(s) 284
RsaI GTAC 1 cut(s) 1382
RsaNI GTAC 1 cut(s) 1381
RseI CAYNNNNRTG 3 cut(s) 462, 908, 1466
SapI GCTCTTC 1 cut(s) 573
SaqAI TTAA 2 cut(s) 543, 1416
SatI GCNGC 3 cut(s) 282, 426, 1293
Sau3AI GATC 3 cut(s) 611, 1312, 1429
Sau96I GGNCC 3 cut(s) 66, 350, 833
ScaI AGTACT 1 cut(s) 1382
SchI GAGTC 1 cut(s) 633
ScrFI CCNGG 2 cut(s) 836, 1434
SduI GDGCHC 2 cut(s) 340, 1035
SfaNI GCATC 4 cut(s) 514, 515, 849, 1470
SinI GGWCC 1 cut(s) 66
SmiMI CAYNNNNRTG 3 cut(s) 462, 908, 1466
Sse9I AATT 8 cut(s) 223, 288, 429, 531, 552, 812, 989, 1303
SsiI CCGC 1 cut(s) 331
SspMI CTAG 5 cut(s) 503, 557, 632, 776, 1287
StyD4I CCNGG 2 cut(s) 834, 1432
StyI CCWWGG 2 cut(s) 570, 1422
TaaI ACNGT 3 cut(s) 442, 676, 1269
TaiI ACGT 1 cut(s) 775
TaqI TCGA 3 cut(s) 218, 950, 1162
TasI AATT 8 cut(s) 223, 288, 429, 531, 552, 812, 989, 1303
TatI WGTACW 1 cut(s) 1380
TfiI GAWTC 6 cut(s) 191, 213, 266, 919, 959, 1139
Tru1I TTAA 2 cut(s) 543, 1416
Tru9I TTAA 2 cut(s) 543, 1416
TscAI CASTG 3 cut(s) 189, 469, 1473
TseFI GTSAC 2 cut(s) 791, 1024
TseI GCWGC 3 cut(s) 281, 425, 1292
Tsp45I GTSAC 2 cut(s) 791, 1024
TspDTI ATGAA 9 cut(s) 17, 34, 159, 279, 757, 1084, 1194, 1400, 1464
TspRI CASTG 3 cut(s) 189, 469, 1473
Tth111I GACNNNGTC 1 cut(s) 515
Van91I CCANNNNNTGG 1 cut(s) 1192
VpaK11BI GGWCC 1 cut(s) 66
XapI RAATTY 2 cut(s) 552, 812
XbaI TCTAGA 1 cut(s) 556
XmnI GAANNNNTTC 5 cut(s) 150, 166, 848, 1382, 1394
XspI CTAG 5 cut(s) 503, 557, 632, 776, 1287
ZrmI AGTACT 1 cut(s) 1382
Zsp2I ATGCAT 1 cut(s) 1258
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.