RchiOBHm_Chr4g0431071

Belongs to the oxygen-dependent FAD-linked oxidoreductase family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
Physical Location & Seq
Reverse (-)
55406386 .. 55406664
279 bp
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UTR
Exon/CDS
Intron
PRQ39978

Sequence Viewer

Length: 279 bp
ATGAGTGAGATTTCCGATTCAGAAACTGCTTTCCCACATCGAAAAGGAAACAAATATGAAATCCAGTATATGGTTACTTGGGGTGATGGCAAGGACACCAAGAAGTATGTTGGATTTATGAGAAGGCTGTATGCATACATGGCCCCATATGTTTCAAAGTCTCCTAGAGCTGCCTATTTGAATTATAGGGATCTTGATTTGGGGAGGAACAGTTGTGGCAATACAAGCCATGCACAAGCAAGCATTTGGGGGTTTGAAGTACTTCAAAAACAATTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

92

Amino Acids

10.67

Weight (kDa)

9.27

Isoelectric Point (pI)

49.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 70
AclWI GGATC 1 cut(s) 198
AfaI GTAC 1 cut(s) 261
AfiI CCNNNNNNNGG 1 cut(s) 70
AgsI TTSAA 4 cut(s) 156, 181, 257, 266
AluBI AGCT 1 cut(s) 170
AluI AGCT 1 cut(s) 170
Alw26I GTCTC 1 cut(s) 165
AlwI GGATC 1 cut(s) 198
AlwNI CAGNNNCTG 1 cut(s) 26
AoxI GGCC 1 cut(s) 141
ApeKI GCWGC 1 cut(s) 170
Asp700I GAANNNNTTC 1 cut(s) 261
AspS9I GGNCC 1 cut(s) 142
AsuHPI GGTGA 1 cut(s) 95
BbvI GCAGC 1 cut(s) 157
BccI CCATC 1 cut(s) 80
BcoDI GTCTC 1 cut(s) 165
BfaI CTAG 1 cut(s) 165
BisI GCNGC 1 cut(s) 171
BlsI GCNGC 1 cut(s) 172
BmcAI AGTACT 1 cut(s) 261
BmgT120I GGNCC 1 cut(s) 142
BmiI GGNNCC 1 cut(s) 144
BsaXI ACNNNNNCTCC 2 cut(s) 196, 226
Bsc4I CCNNNNNNNGG 1 cut(s) 70
Bse1I ACTGG 1 cut(s) 64
BseLI CCNNNNNNNGG 1 cut(s) 70
BseNI ACTGG 1 cut(s) 64
BseXI GCAGC 1 cut(s) 157
BshFI GGCC 1 cut(s) 143
BslI CCNNNNNNNGG 1 cut(s) 70
BsmAI GTCTC 1 cut(s) 165
BsnI GGCC 1 cut(s) 143
Bsp143I GATC 1 cut(s) 190
BspANI GGCC 1 cut(s) 143
BspLI GGNNCC 1 cut(s) 144
BspPI GGATC 1 cut(s) 198
BsrI ACTGG 1 cut(s) 64
BssMI GATC 1 cut(s) 190
Bst4CI ACNGT 1 cut(s) 212
BstC8I GCNNGC 1 cut(s) 241
BstKTI GATC 1 cut(s) 193
BstMAI GTCTC 1 cut(s) 165
BstMBI GATC 1 cut(s) 190
BstMWI GCNNNNNNNGC 2 cut(s) 140, 225
BstV1I GCAGC 1 cut(s) 157
BstX2I RGATCY 1 cut(s) 190
BstYI RGATCY 1 cut(s) 190
BsuRI GGCC 1 cut(s) 143
Cac8I GCNNGC 1 cut(s) 241
CaiI CAGNNNCTG 1 cut(s) 26
Cfr13I GGNCC 1 cut(s) 142
Csp6I GTAC 1 cut(s) 260
CviAII CATG 2 cut(s) 139, 230
CviJI RGCY 4 cut(s) 127, 143, 170, 228
CviKI_1 RGCY 4 cut(s) 127, 143, 170, 228
CviQI GTAC 1 cut(s) 260
DpnI GATC 1 cut(s) 192
DpnII GATC 1 cut(s) 190
EcoT22I ATGCAT 1 cut(s) 136
FaeI CATG 2 cut(s) 142, 233
FatI CATG 2 cut(s) 138, 229
FauNDI CATATG 1 cut(s) 148
Fnu4HI GCNGC 1 cut(s) 171
Fsp4HI GCNGC 1 cut(s) 171
FspBI CTAG 1 cut(s) 165
GluI GCNGC 1 cut(s) 171
HaeIII GGCC 1 cut(s) 143
Hin1II CATG 2 cut(s) 142, 233
HinfI GANTC 1 cut(s) 17
HphI GGTGA 1 cut(s) 95
Hpy188I TCNGA 2 cut(s) 16, 22
Hpy188III TCNNGA 1 cut(s) 194
HpyAV CCTTC 1 cut(s) 117
HpyCH4III ACNGT 1 cut(s) 212
HpyCH4V TGCA 2 cut(s) 134, 233
HpyF10VI GCNNNNNNNGC 2 cut(s) 140, 225
Hsp92II CATG 2 cut(s) 142, 233
Kzo9I GATC 1 cut(s) 190
LpnPI CCDG 1 cut(s) 77
Lsp1109I GCAGC 1 cut(s) 157
MaeI CTAG 1 cut(s) 165
MaeIII GTNAC 1 cut(s) 73
MalI GATC 1 cut(s) 192
MboI GATC 1 cut(s) 190
MflI RGATCY 1 cut(s) 190
MluCI AATT 2 cut(s) 181, 272
MmeI TCCRAC 1 cut(s) 91
MnlI CCTC 1 cut(s) 198
Mph1103I ATGCAT 1 cut(s) 136
MroXI GAANNNNTTC 1 cut(s) 261
MwoI GCNNNNNNNGC 2 cut(s) 140, 225
NdeI CATATG 1 cut(s) 148
NdeII GATC 1 cut(s) 190
NlaIII CATG 2 cut(s) 142, 233
NlaIV GGNNCC 1 cut(s) 144
NsiI ATGCAT 1 cut(s) 136
PdmI GAANNNNTTC 1 cut(s) 261
PfeI GAWTC 1 cut(s) 17
PflMI CCANNNNNTGG 1 cut(s) 70
PkrI GCNGC 1 cut(s) 172
PspN4I GGNNCC 1 cut(s) 144
PspPI GGNCC 1 cut(s) 142
PstNI CAGNNNCTG 1 cut(s) 26
PsuI RGATCY 1 cut(s) 190
RsaI GTAC 1 cut(s) 261
RsaNI GTAC 1 cut(s) 260
SatI GCNGC 1 cut(s) 171
Sau3AI GATC 1 cut(s) 190
Sau96I GGNCC 1 cut(s) 142
ScaI AGTACT 1 cut(s) 261
SetI ASST 1 cut(s) 172
Sse9I AATT 2 cut(s) 181, 272
SspMI CTAG 1 cut(s) 165
TaaI ACNGT 1 cut(s) 212
TaqI TCGA 1 cut(s) 40
TasI AATT 2 cut(s) 181, 272
TatI WGTACW 1 cut(s) 259
TfiI GAWTC 1 cut(s) 17
TseI GCWGC 1 cut(s) 170
TspDTI ATGAA 1 cut(s) 72
Van91I CCANNNNNTGG 1 cut(s) 70
XmnI GAANNNNTTC 1 cut(s) 261
XspI CTAG 1 cut(s) 165
ZrmI AGTACT 1 cut(s) 261
Zsp2I ATGCAT 1 cut(s) 136
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.