Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0000925

Physical Location & Seq

Genomic Coordinates Reverse (-)

13332992 .. 13333961

Gene Structure 970 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000032304

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGGAAAAGTTCTGGACAGGAAATCTATGGGAGAAGATATGTTTTGGATGCTCAAGCTTTGGAGTCATTCTTGCATGGAAACTTACACTAGCTCCAGTTCCCCCATCTGTAACCGTTTTCCAAATTGAAAAAACCATAGAAGAAGGTGCTACCAGACTTCTTTCTAAGTGGCAAGTCATAGCAGATAAGCTTCATGAAGACCTGTTCCTCCATTTATTGACAGGTGTTGCAGAAAAAGCTAGCTCCACTGGCGGCAAAACTATCTCAGTTTCATTTGATGCATTGTTCCTTGGACCAGTTGAGAAACTTCTTCCTTTGATGCAAGACAATTTCCCATATTTAAGTTTAAGGACTAAATACTTTCCCAACCCGAATCCATCACTTAAGCCTCCGAACCGGACCTGGACTCTCTCTCACTTCAACTCCACCTCTGTCTTTACCGCAATGCCCTCCGCTTCAAACCCCTCACCTCCCTCGCCTCCGCCGTCACCTACAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

BBE FAD_binding_4

Protein Analysis

167

Amino Acids

18.32

Weight (kDa)

8.58

Isoelectric Point (pI)

45.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000925)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20820 AT5G44360 AT5G44360 AT5G44410 AT5G44440 AT5G44440
fragaria_vesca	FvH4_3g10860 FvH4_3g10930 FvH4_3g10940 FvH4_3g10940 FvH4_3g10941
malus_domestica	MD05G1267700.v1.1 MD05G1267800.v1.1 MD05G1267900.v1.1 MD05G1268000.v1.1 MD05G1268100.v1.1 MD05G1268200.v1.1 MD10G1244300.v1.1
prunus_persica	Prupe.4G092500_v2.0.a1 Prupe.4G096500_v2.0.a1 Prupe.4G096600_v2.0.a1 Prupe.4G096700_v2.0.a1 Prupe.4G096900_v2.0.a1 Prupe.4G097000_v2.0.a1 Prupe.4G097100_v2.0.a1 Prupe.4G097200_v2.0.a1 Prupe.4G097300_v2.0.a1 Prupe.4G097500_v2.0.a1 Prupe.4G097700_v2.0.a1 Prupe.4G097800_v2.0.a1 Prupe.4G098200_v2.0.a1
pyrus_communis	pycom05g25090 pycom05g25120 pycom10g20430 pycom10g20480 pycom10g20490
rosa_chinensis	RchiOBHm_Chr4g0431071 RchiOBHm_Chr4g0431081 RchiOBHm_Chr5g0017651 RchiOBHm_Chr5g0017661 RchiOBHm_Chr5g0017681 RchiOBHm_Chr5g0017691
rosa_laevigata	RLG00000006927 RLG00000032303 RLG00000032304 RLG00000032305
rosa_multiflora	Rmu_sc0000346.1_g000001 Rmu_sc0003415.1_g000006 Rmu_sc0003415.1_g000009 Rmu_sc0003592.1_g000009 Rmu_sc0005192.1_g000001 Rmu_sc0009555.1_g000002 Rmu_sc0010203.1_g000009
rosa_roxburghii	Rroxscaffold_1G00059800 Rroxscaffold_1G00059820
rosa_rugosa	Rorug05G0037300 Rorug05G0037300 Rorug05G0037300 Rorug05G0037400 Rorug05G0038600
rosa_samantha	Rh5BG129000
rosa_wichuraiana	Rw5G011340 Rw5G011350 Rw5G011430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	252, 441, 453, 482
AflII	CTTAAG	1 cut(s)	383
AgsI	TTSAA	3 cut(s)	128, 421, 459
AjnI	CCWGG	1 cut(s)	401
AluBI	AGCT	5 cut(s)	57, 92, 190, 239, 243
AluI	AGCT	5 cut(s)	57, 92, 190, 239, 243
AspS9I	GGNCC	2 cut(s)	293, 399
AsuHPI	GGTGA	2 cut(s)	459, 480
AsuNHI	GCTAGC	1 cut(s)	239
AvaII	GGWCC	2 cut(s)	293, 399
BbsI	GAAGAC	1 cut(s)	204
BccI	CCATC	2 cut(s)	112, 385
BceAI	ACGGC	1 cut(s)	469
BciT130I	CCWGG	1 cut(s)	403
BfaI	CTAG	2 cut(s)	89, 240
BfrI	CTTAAG	1 cut(s)	383
BisI	GCNGC	1 cut(s)	253
BlsI	GCNGC	1 cut(s)	254
Bme1390I	CCNGG	1 cut(s)	403
Bme18I	GGWCC	2 cut(s)	293, 399
BmgT120I	GGNCC	2 cut(s)	293, 399
BmrFI	CCNGG	1 cut(s)	403
BmsI	GCATC	3 cut(s)	38, 268, 309
BmtI	GCTAGC	1 cut(s)	243
BpiI	GAAGAC	1 cut(s)	204
BpmI	CTGGAG	1 cut(s)	78
BpuEI	CTTGAG	1 cut(s)	37
BsaJI	CCNNGG	1 cut(s)	289
BsaWI	WCCGGW	1 cut(s)	396
BsaXI	ACNNNNNCTCC	4 cut(s)	76, 106, 407, 437
Bse1I	ACTGG	3 cut(s)	95, 253, 296
Bse3DI	GCAATG	1 cut(s)	450
BseBI	CCWGG	1 cut(s)	403
BseDI	CCNNGG	1 cut(s)	289
BseGI	GGATG	1 cut(s)	53
BseMI	GCAATG	1 cut(s)	450
BseMII	CTCAG	1 cut(s)	279
BseNI	ACTGG	3 cut(s)	95, 253, 296
BsiSI	CCGG	1 cut(s)	397
BspACI	CCGC	4 cut(s)	252, 441, 453, 482
BspCNI	CTCAG	1 cut(s)	278
BspHI	TCATGA	1 cut(s)	193
BspOI	GCTAGC	1 cut(s)	243
BspTI	CTTAAG	1 cut(s)	383
BsrDI	GCAATG	1 cut(s)	450
BsrI	ACTGG	3 cut(s)	95, 253, 296
BssECI	CCNNGG	1 cut(s)	289
BssT1I	CCWWGG	1 cut(s)	289
Bst2UI	CCWGG	1 cut(s)	403
Bst4CI	ACNGT	1 cut(s)	115
BstAFI	CTTAAG	1 cut(s)	383
BstC8I	GCNNGC	1 cut(s)	241
BstDEI	CTNAG	2 cut(s)	165, 265
BstF5I	GGATG	1 cut(s)	53
BstMWI	GCNNNNNNNGC	2 cut(s)	236, 249
BstNI	CCWGG	1 cut(s)	403
BstSCI	CCNGG	1 cut(s)	401
BstV2I	GAAGAC	1 cut(s)	204
BtsCI	GGATG	1 cut(s)	53
BtsIMutI	CAGTG	1 cut(s)	246
Cac8I	GCNNGC	1 cut(s)	241
CciI	TCATGA	1 cut(s)	193
Cfr13I	GGNCC	2 cut(s)	293, 399
CviAII	CATG	2 cut(s)	75, 194
CviJI	RGCY	6 cut(s)	57, 92, 190, 239, 243, 388
CviKI_1	RGCY	6 cut(s)	57, 92, 190, 239, 243, 388
DdeI	CTNAG	2 cut(s)	165, 265
EciI	GGCGGA	1 cut(s)	471
Eco130I	CCWWGG	1 cut(s)	289
Eco47I	GGWCC	2 cut(s)	293, 399
EcoRII	CCWGG	1 cut(s)	401
EcoT14I	CCWWGG	1 cut(s)	289
EcoT22I	ATGCAT	1 cut(s)	283
ErhI	CCWWGG	1 cut(s)	289
FaeI	CATG	2 cut(s)	78, 197
FaiI	YATR	7 cut(s)	28, 40, 76, 137, 179, 195, 337
FatI	CATG	2 cut(s)	74, 193
Fnu4HI	GCNGC	1 cut(s)	253
FokI	GGATG	1 cut(s)	60
Fsp4HI	GCNGC	1 cut(s)	253
FspBI	CTAG	2 cut(s)	89, 240
GluI	GCNGC	1 cut(s)	253
GsuI	CTGGAG	1 cut(s)	78
HapII	CCGG	1 cut(s)	397
Hin1II	CATG	2 cut(s)	78, 197
HindIII	AAGCTT	2 cut(s)	55, 188
HinfI	GANTC	3 cut(s)	63, 373, 406
HpaII	CCGG	1 cut(s)	397
HphI	GGTGA	2 cut(s)	459, 480
Hpy188I	TCNGA	1 cut(s)	393
Hpy188III	TCNNGA	2 cut(s)	13, 194
HpyAV	CCTTC	1 cut(s)	137
HpyCH4III	ACNGT	1 cut(s)	115
HpyCH4V	TGCA	4 cut(s)	74, 230, 281, 322
HpyF10VI	GCNNNNNNNGC	2 cut(s)	236, 249
HpyF3I	CTNAG	2 cut(s)	165, 265
Hsp92II	CATG	2 cut(s)	78, 197
LmnI	GCTCC	2 cut(s)	97, 248
LweI	GCATC	3 cut(s)	38, 268, 309
MaeI	CTAG	2 cut(s)	89, 240
MaeIII	GTNAC	2 cut(s)	109, 486
MboII	GAAGA	4 cut(s)	46, 152, 209, 302
MluCI	AATT	2 cut(s)	123, 328
MlyI	GAGTC	2 cut(s)	72, 400
MnlI	CCTC	8 cut(s)	218, 399, 439, 460, 475, 480, 484, 489
Mph1103I	ATGCAT	1 cut(s)	283
MseI	TTAA	3 cut(s)	341, 347, 384
MspCI	CTTAAG	1 cut(s)	383
MspI	CCGG	1 cut(s)	397
MspR9I	CCNGG	1 cut(s)	403
MvaI	CCWGG	1 cut(s)	403
MwoI	GCNNNNNNNGC	2 cut(s)	236, 249
NheI	GCTAGC	1 cut(s)	239
NlaIII	CATG	2 cut(s)	78, 197
NmuCI	GTSAC	1 cut(s)	486
NsiI	ATGCAT	1 cut(s)	283
PagI	TCATGA	1 cut(s)	193
PcsI	WCGNNNNNNNCGW	1 cut(s)	482
PfeI	GAWTC	1 cut(s)	373
PkrI	GCNGC	1 cut(s)	254
PleI	GAGTC	2 cut(s)	71, 400
PpsI	GAGTC	2 cut(s)	71, 400
Psp6I	CCWGG	1 cut(s)	401
PspGI	CCWGG	1 cut(s)	401
PspPI	GGNCC	2 cut(s)	293, 399
SaqAI	TTAA	3 cut(s)	341, 347, 384
SatI	GCNGC	1 cut(s)	253
Sau96I	GGNCC	2 cut(s)	293, 399
SchI	GAGTC	2 cut(s)	72, 400
ScrFI	CCNGG	1 cut(s)	403
SfaNI	GCATC	3 cut(s)	38, 268, 309
SinI	GGWCC	2 cut(s)	293, 399
SmlI	CTYRAG	2 cut(s)	52, 383
SmoI	CTYRAG	2 cut(s)	52, 383
Sse9I	AATT	2 cut(s)	123, 328
SsiI	CCGC	4 cut(s)	252, 441, 453, 482
SspMI	CTAG	2 cut(s)	89, 240
StyD4I	CCNGG	1 cut(s)	401
StyI	CCWWGG	1 cut(s)	289
TaaI	ACNGT	1 cut(s)	115
TasI	AATT	2 cut(s)	123, 328
TauI	GCSGC	1 cut(s)	255
TfiI	GAWTC	1 cut(s)	373
Tru1I	TTAA	3 cut(s)	341, 347, 384
Tru9I	TTAA	3 cut(s)	341, 347, 384
TscAI	CASTG	1 cut(s)	253
TseFI	GTSAC	1 cut(s)	486
Tsp45I	GTSAC	1 cut(s)	486
TspDTI	ATGAA	3 cut(s)	182, 210, 261
TspRI	CASTG	1 cut(s)	253
Vha464I	CTTAAG	1 cut(s)	383
VpaK11BI	GGWCC	2 cut(s)	293, 399
XspI	CTAG	2 cut(s)	89, 240
Zsp2I	ATGCAT	1 cut(s)	283

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.