Prupe.4G096500_v2.0.a1

Belongs to the oxygen-dependent FAD-linked oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0000925
Physical Location & Seq
Reverse (-)
4848924 .. 4850856
1933 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G096500.1

Sequence Viewer

Length: 1521 bp
CAAATCATTATCACCAAACGCAGTTCTGCTTATTTCTCAGCCGTGCAATCTTCCATACAAAACCTCATATTCGTGACCAGAGGAACATCAAGACCAGAAGCTATCATTACTCTCCTTCATGACTCTCATGGCGTGCTAATCAGAATCCGAAGCAGGGGCCATGACTACGAGGGCCAATCTTACGTAGCCAGAGCTCCTTTTGTCATCATTGATCTTTTCAATCTTCGGTCTATTGATGTTGACATAGAGAATGGGAGTGCTTGGGTTGAATCCGGTGCTACTCTTGGAGAGTTGTATTACAGAATTGCAGAAAAAAGTAAGGCTTATGGATTTCCAGCGGGGTCATGTCCTACCATAGGTGTGGGGGGACATATTAGTGGAGGTGGATTTGGTACCTTGTTCAGGAAGTATGGTCTGGCAGCTGACAATGTCCTTGATGCTAAAATTGTCGACGTTAATGGCAGAGTTCTTGACAGAAAACCCATGGGAGAAGAACTCTTTTGGGCTATTAGAGGAGGGGGAGGTTCAAGCTTTGGAGTTATTCTGGCATGGAAACTTAAGTTGGTTCCTGTCCCTCCATCTGTAACACGTCATGAAGACCTTTTCCTACATTCAGTCATAGGTGTTGGAAATAAAGCAGGCACAAATGGTGACAAAACTATTATTATTGAATTCAGTTCATTGTTTCTTGGGCCCGTGGAGAAACTTCTCCCCTCGATGCAGGACAATTTTTCAGAGTTAAGTGTAGACCGCAGCGATTGCACTGAAATGAGCTGGATTGAGTCTGTTCTTTACTTTGCTTTCATCCCAAGAAACGAATCAGAAGCTTTGCTCGGGAGGACTCAACAATCTAAGAGCTTTGCCAAACCCCAAGGCATCTTTTGGACACATAGAACACCCACAATGAATGTCAACAGTCCCACATCGAAATTCTGCACAACATGCACACCTTCCAAGACTTATAAAAGGGGCACAAGTCCCAAAATTGAGGTAACTGGAACTTTCGGCACACTCAAAACATCAACAAGCGTCTTCAAAGCAAAATCAGACTACGTGAATGAACCTATTTCGAAAGCTGGCTTGGAAGGCTTATGGCAAACACTAATTGAAGTAAAGGCTTACCTGATATTGACACTTTATGGTGGAAAAATTAGTGAGATTTCCAATTCAGAAATTCATTTTCCACACAGAAGTGGAAATCTATTCAAAATCCAGTATATGGTCACTTGGGATGATTACAGGGAAAATGAGATAGGTGAGAGCTTGATGAGAAAGCTGTATGACTACATGGCACCATATGTTTCAAAGTCCCCAAGAGCTGCCTATTTGAACTATAAGGATCTTGACTTGGGAAGGAACAATGATGTTCATACAAGCTATGCACAAGCAAGCATTTGGGGTTTGAAGTATTTCAAGAACAACTTTAGGAGACTTGTTCATGTTAAGACCTTAGTTGATCCTGGTAACTTCTTCAGGGATGAACAAAGCATCCCTAGTGTGCGTTCATCTAGGAAGAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
BBE FAD_binding_4

Protein Analysis

507

Amino Acids

56.46

Weight (kDa)

9.27

Isoelectric Point (pI)

42.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 963
Acc65I GGTACC 1 cut(s) 392
AccB1I GGYRCC 2 cut(s) 392, 1291
AccB7I CCANNNNNTGG 1 cut(s) 1219
AccI GTMKAC 2 cut(s) 450, 747
AciI CCGC 2 cut(s) 338, 751
AclWI GGATC 2 cut(s) 1347, 1451
AcsI RAATTY 3 cut(s) 671, 929, 1173
AcuI CTGAAG 1 cut(s) 1456
AfaI GTAC 1 cut(s) 394
AfiI CCNNNNNNNGG 4 cut(s) 154, 356, 402, 1219
AflII CTTAAG 1 cut(s) 557
AflIII ACRYGT 1 cut(s) 587
AjiI CACGTC 1 cut(s) 590
AjnI CCWGG 1 cut(s) 1459
AjuI GAANNNNNNNTTGG 4 cut(s) 545, 577, 1064, 1096
AleI CACNNNNGTG 1 cut(s) 1191
AloI GAACNNNNNNTCC 2 cut(s) 1473, 1505
Alw21I GWGCWC 1 cut(s) 196
Alw26I GTCTC 1 cut(s) 1423
AlwI GGATC 2 cut(s) 1347, 1451
Ama87I CYCGRG 1 cut(s) 833
AoxI GGCC 3 cut(s) 157, 172, 692
ApaI GGGCCC 1 cut(s) 696
ApeKI GCWGC 3 cut(s) 419, 753, 1319
ApoI RAATTY 3 cut(s) 671, 929, 1173
Asp700I GAANNNNTTC 1 cut(s) 1409
Asp718I GGTACC 1 cut(s) 392
AspS9I GGNCC 4 cut(s) 157, 172, 692, 693
AsuHPI GGTGA 3 cut(s) 4, 662, 1268
AsuII TTCGAA 1 cut(s) 1070
AvaI CYCGRG 1 cut(s) 833
BaeGI GKGCMC 2 cut(s) 696, 974
BanI GGYRCC 2 cut(s) 392, 1291
BanII GRGCYC 2 cut(s) 196, 696
BbsI GAAGAC 2 cut(s) 603, 1024
Bbv12I GWGCWC 1 cut(s) 196
BbvI GCAGC 3 cut(s) 431, 765, 1306
BccI CCATC 1 cut(s) 586
BceAI ACGGC 1 cut(s) 26
BciT130I CCWGG 1 cut(s) 1461
BcoDI GTCTC 1 cut(s) 1423
BfaI CTAG 2 cut(s) 1494, 1509
BfrI CTTAAG 1 cut(s) 557
BisI GCNGC 3 cut(s) 420, 754, 1320
BlsI GCNGC 3 cut(s) 421, 755, 1321
Bme1390I CCNGG 1 cut(s) 1461
BmeT110I CYCGRG 1 cut(s) 833
BmgBI CACGTC 1 cut(s) 590
BmgT120I GGNCC 4 cut(s) 157, 172, 692, 693
BmiI GGNNCC 5 cut(s) 158, 394, 567, 694, 1293
BmrFI CCNGG 1 cut(s) 1461
BmsI GCATC 4 cut(s) 427, 708, 885, 1497
BpiI GAAGAC 2 cut(s) 603, 1024
BplI GAGNNNNNCTC 2 cut(s) 480, 512
Bpu14I TTCGAA 1 cut(s) 1070
BsaAI YACGTR 2 cut(s) 184, 1054
BsaJI CCNNGG 3 cut(s) 483, 696, 871
BsaWI WCCGGW 1 cut(s) 272
Bsc4I CCNNNNNNNGG 4 cut(s) 154, 356, 402, 1219
Bse1I ACTGG 2 cut(s) 1000, 1213
BseBI CCWGG 1 cut(s) 1461
BseDI CCNNGG 3 cut(s) 483, 696, 871
BseGI GGATG 4 cut(s) 804, 1237, 1483, 1488
BseLI CCNNNNNNNGG 4 cut(s) 154, 356, 402, 1219
BseMII CTCAG 1 cut(s) 51
BseNI ACTGG 2 cut(s) 1000, 1213
BseRI GAGGAG 1 cut(s) 528
BseSI GKGCMC 2 cut(s) 696, 974
BseXI GCAGC 3 cut(s) 431, 765, 1306
BsgI GTGCAG 1 cut(s) 919
BshFI GGCC 3 cut(s) 159, 174, 694
BshNI GGYRCC 2 cut(s) 392, 1291
BsiHKAI GWGCWC 1 cut(s) 196
BsiHKCI CYCGRG 1 cut(s) 833
BsiSI CCGG 1 cut(s) 273
BslFI GGGAC 5 cut(s) 381, 557, 903, 963, 1294
BslI CCNNNNNNNGG 4 cut(s) 154, 356, 402, 1219
BsmAI GTCTC 1 cut(s) 1423
BsmFI GGGAC 5 cut(s) 381, 557, 903, 963, 1294
BsnI GGCC 3 cut(s) 159, 174, 694
BsoBI CYCGRG 1 cut(s) 833
Bsp119I TTCGAA 1 cut(s) 1070
Bsp120I GGGCCC 1 cut(s) 692
Bsp1286I GDGCHC 3 cut(s) 196, 696, 974
Bsp143I GATC 3 cut(s) 211, 1339, 1456
Bsp19I CCATGG 1 cut(s) 483
BspACI CCGC 2 cut(s) 338, 751
BspANI GGCC 3 cut(s) 159, 174, 694
BspCNI CTCAG 1 cut(s) 50
BspHI TCATGA 2 cut(s) 118, 592
BspLI GGNNCC 5 cut(s) 158, 394, 567, 694, 1293
BspPI GGATC 2 cut(s) 1347, 1451
BspT104I TTCGAA 1 cut(s) 1070
BspT107I GGYRCC 2 cut(s) 392, 1291
BspTI CTTAAG 1 cut(s) 557
BsrI ACTGG 2 cut(s) 1000, 1213
BssECI CCNNGG 3 cut(s) 483, 696, 871
BssMI GATC 3 cut(s) 211, 1339, 1456
BssT1I CCWWGG 2 cut(s) 483, 871
Bst2UI CCWGG 1 cut(s) 1461
Bst4CI ACNGT 1 cut(s) 917
BstAFI CTTAAG 1 cut(s) 557
BstAPI GCANNNNNTGC 2 cut(s) 759, 942
BstBAI YACGTR 2 cut(s) 184, 1054
BstBI TTCGAA 1 cut(s) 1070
BstC8I GCNNGC 4 cut(s) 134, 640, 1078, 1390
BstDEI CTNAG 3 cut(s) 37, 852, 1450
BstDSI CCRYGG 2 cut(s) 483, 696
BstENI CCTNNNNNAGG 2 cut(s) 354, 400
BstF5I GGATG 4 cut(s) 804, 1237, 1483, 1488
BstKTI GATC 3 cut(s) 214, 1342, 1459
BstMAI GTCTC 1 cut(s) 1423
BstMBI GATC 3 cut(s) 211, 1339, 1456
BstMWI GCNNNNNNNGC 3 cut(s) 759, 942, 1086
BstNI CCWGG 1 cut(s) 1461
BstNSI RCATGY 1 cut(s) 945
BstSCI CCNGG 1 cut(s) 1459
BstSLI GKGCMC 2 cut(s) 696, 974
BstSNI TACGTA 1 cut(s) 184
BstV1I GCAGC 3 cut(s) 431, 765, 1306
BstV2I GAAGAC 2 cut(s) 603, 1024
BstX2I RGATCY 1 cut(s) 1339
BstXI CCANNNNNNTGG 1 cut(s) 361
BstYI RGATCY 1 cut(s) 1339
BsuRI GGCC 3 cut(s) 159, 174, 694
BtgI CCRYGG 2 cut(s) 483, 696
BtrI CACGTC 1 cut(s) 590
BtsCI GGATG 4 cut(s) 804, 1237, 1483, 1488
BtsIMutI CAGTG 1 cut(s) 762
Cac8I GCNNGC 4 cut(s) 134, 640, 1078, 1390
CciI TCATGA 2 cut(s) 118, 592
Cfr13I GGNCC 4 cut(s) 157, 172, 692, 693
CseI GACGC 1 cut(s) 1018
Csp6I GTAC 1 cut(s) 393
CviQI GTAC 1 cut(s) 393
DdeI CTNAG 3 cut(s) 37, 852, 1450
DpnI GATC 3 cut(s) 213, 1341, 1458
DpnII GATC 3 cut(s) 211, 1339, 1456
Ecl136II GAGCTC 1 cut(s) 194
Eco105I TACGTA 1 cut(s) 184
Eco130I CCWWGG 2 cut(s) 483, 871
Eco24I GRGCYC 2 cut(s) 196, 696
Eco53kI GAGCTC 1 cut(s) 194
Eco57I CTGAAG 1 cut(s) 1456
Eco88I CYCGRG 1 cut(s) 833
EcoICRI GAGCTC 1 cut(s) 194
EcoNI CCTNNNNNAGG 2 cut(s) 354, 400
EcoRI GAATTC 1 cut(s) 671
EcoRII CCWGG 1 cut(s) 1459
EcoT14I CCWWGG 2 cut(s) 483, 871
EcoT38I GRGCYC 2 cut(s) 196, 696
ErhI CCWWGG 2 cut(s) 483, 871
FalI AAGNNNNNCTT 4 cut(s) 307, 339, 1406, 1438
FaqI GGGAC 5 cut(s) 381, 557, 903, 963, 1294
FauI CCCGC 1 cut(s) 331
FauNDI CATATG 1 cut(s) 1297
FblI GTMKAC 2 cut(s) 450, 747
Fnu4HI GCNGC 3 cut(s) 420, 754, 1320
FokI GGATG 4 cut(s) 791, 1244, 1475, 1490
FriOI GRGCYC 2 cut(s) 196, 696
Fsp4HI GCNGC 3 cut(s) 420, 754, 1320
FspBI CTAG 2 cut(s) 1494, 1509
GluI GCNGC 3 cut(s) 420, 754, 1320
HaeIII GGCC 3 cut(s) 159, 174, 694
HapII CCGG 1 cut(s) 273
HgaI GACGC 1 cut(s) 1018
HincII GTYRAC 3 cut(s) 241, 451, 913
HindII GTYRAC 3 cut(s) 241, 451, 913
HindIII AAGCTT 2 cut(s) 529, 825
HinfI GANTC 6 cut(s) 122, 144, 269, 782, 818, 841
HpaII CCGG 1 cut(s) 273
HphI GGTGA 3 cut(s) 4, 662, 1268
Hpy166II GTNNAC 4 cut(s) 241, 451, 748, 913
Hpy188I TCNGA 6 cut(s) 143, 149, 736, 823, 1048, 1171
Hpy188III TCNNGA 9 cut(s) 73, 90, 119, 403, 470, 593, 835, 1343, 1414
Hpy8I GTNNAC 4 cut(s) 241, 451, 748, 913
Hpy99I CGWCG 1 cut(s) 455
HpyAV CCTTC 4 cut(s) 125, 960, 1079, 1347
HpyCH4III ACNGT 1 cut(s) 917
HpyCH4IV ACGT 4 cut(s) 183, 453, 589, 1053
HpyCH4V TGCA 7 cut(s) 46, 308, 721, 762, 936, 945, 1382
HpyF10VI GCNNNNNNNGC 3 cut(s) 759, 942, 1086
HpyF3I CTNAG 3 cut(s) 37, 852, 1450
HpySE526I ACGT 4 cut(s) 183, 453, 589, 1053
KpnI GGTACC 1 cut(s) 396
Kzo9I GATC 3 cut(s) 211, 1339, 1456
LmnI GCTCC 1 cut(s) 199
Lsp1109I GCAGC 3 cut(s) 431, 765, 1306
LweI GCATC 4 cut(s) 427, 708, 885, 1497
MaeI CTAG 2 cut(s) 1494, 1509
MaeII ACGT 4 cut(s) 183, 453, 589, 1053
MaeIII GTNAC 6 cut(s) 73, 583, 650, 991, 1222, 1463
MalI GATC 3 cut(s) 213, 1341, 1458
MboI GATC 3 cut(s) 211, 1339, 1456
MboII GAAGA 6 cut(s) 42, 215, 503, 608, 1024, 1462
MflI RGATCY 1 cut(s) 1339
MhlI GDGCHC 3 cut(s) 196, 696, 974
MlyI GAGTC 3 cut(s) 116, 791, 835
MmeI TCCRAC 1 cut(s) 607
MroXI GAANNNNTTC 1 cut(s) 1409
MseI TTAA 4 cut(s) 456, 558, 740, 1443
MslI CAYNNNNRTG 5 cut(s) 71, 359, 375, 767, 1191
MspA1I CMGCKG 2 cut(s) 338, 422
MspCI CTTAAG 1 cut(s) 557
MspI CCGG 1 cut(s) 273
MspR9I CCNGG 1 cut(s) 1461
MvaI CCWGG 1 cut(s) 1461
MwoI GCNNNNNNNGC 3 cut(s) 759, 942, 1086
NcoI CCATGG 1 cut(s) 483
NdeI CATATG 1 cut(s) 1297
NdeII GATC 3 cut(s) 211, 1339, 1456
NlaIV GGNNCC 5 cut(s) 158, 394, 567, 694, 1293
NmuCI GTSAC 3 cut(s) 73, 650, 1222
NspI RCATGY 1 cut(s) 945
NspV TTCGAA 1 cut(s) 1070
OliI CACNNNNGTG 1 cut(s) 1191
PagI TCATGA 2 cut(s) 118, 592
PdmI GAANNNNTTC 1 cut(s) 1409
PfeI GAWTC 3 cut(s) 144, 269, 818
PflFI GACNNNGTC 1 cut(s) 428
PflMI CCANNNNNTGG 1 cut(s) 1219
PkrI GCNGC 3 cut(s) 421, 755, 1321
PleI GAGTC 3 cut(s) 116, 790, 835
PpsI GAGTC 3 cut(s) 116, 790, 835
Ppu21I YACGTR 2 cut(s) 184, 1054
PsiI TTATAA 1 cut(s) 963
Psp124BI GAGCTC 1 cut(s) 196
Psp6I CCWGG 1 cut(s) 1459
PspGI CCWGG 1 cut(s) 1459
PspN4I GGNNCC 5 cut(s) 158, 394, 567, 694, 1293
PspOMI GGGCCC 1 cut(s) 692
PspPI GGNCC 4 cut(s) 157, 172, 692, 693
PsuI RGATCY 1 cut(s) 1339
PsyI GACNNNGTC 1 cut(s) 428
PvuII CAGCTG 1 cut(s) 422
RsaI GTAC 1 cut(s) 394
RsaNI GTAC 1 cut(s) 393
RseI CAYNNNNRTG 5 cut(s) 71, 359, 375, 767, 1191
SacI GAGCTC 1 cut(s) 196
SalI GTCGAC 1 cut(s) 449
SaqAI TTAA 4 cut(s) 456, 558, 740, 1443
SatI GCNGC 3 cut(s) 420, 754, 1320
Sau3AI GATC 3 cut(s) 211, 1339, 1456
Sau96I GGNCC 4 cut(s) 157, 172, 692, 693
SchI GAGTC 3 cut(s) 116, 791, 835
ScrFI CCNGG 1 cut(s) 1461
SduI GDGCHC 3 cut(s) 196, 696, 974
SfaNI GCATC 4 cut(s) 427, 708, 885, 1497
SfuI TTCGAA 1 cut(s) 1070
SmiMI CAYNNNNRTG 5 cut(s) 71, 359, 375, 767, 1191
SmlI CTYRAG 1 cut(s) 557
SmoI CTYRAG 1 cut(s) 557
SnaBI TACGTA 1 cut(s) 184
SsiI CCGC 2 cut(s) 338, 751
SspMI CTAG 2 cut(s) 1494, 1509
SstI GAGCTC 1 cut(s) 196
StyD4I CCNGG 1 cut(s) 1459
StyI CCWWGG 2 cut(s) 483, 871
TaaI ACNGT 1 cut(s) 917
TaiI ACGT 4 cut(s) 186, 456, 592, 1056
TaqI TCGA 4 cut(s) 450, 716, 926, 1070
TaqII GACCGA 1 cut(s) 216
TfiI GAWTC 3 cut(s) 144, 269, 818
Tru1I TTAA 4 cut(s) 456, 558, 740, 1443
Tru9I TTAA 4 cut(s) 456, 558, 740, 1443
TscAI CASTG 1 cut(s) 769
TseFI GTSAC 3 cut(s) 73, 650, 1222
TseI GCWGC 3 cut(s) 419, 753, 1319
Tsp45I GTSAC 3 cut(s) 73, 650, 1222
TspRI CASTG 1 cut(s) 769
Tth111I GACNNNGTC 1 cut(s) 428
Van91I CCANNNNNTGG 1 cut(s) 1219
Vha464I CTTAAG 1 cut(s) 557
XagI CCTNNNNNAGG 2 cut(s) 354, 400
XapI RAATTY 3 cut(s) 671, 929, 1173
XceI RCATGY 1 cut(s) 945
XmiI GTMKAC 2 cut(s) 450, 747
XmnI GAANNNNTTC 1 cut(s) 1409
XspI CTAG 2 cut(s) 1494, 1509
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.