Prupe.4G097700_v2.0.a1

Belongs to the oxygen-dependent FAD-linked oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0000925
Physical Location & Seq
Reverse (-)
4927759 .. 4929137
1379 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G097700.1

Sequence Viewer

Length: 678 bp
ATGAAGAGAAGAATGAATGAGGCAAGAAAGAAAGGAAGAGAAGGAAGAAAGAGGGTGAAAGGTGTAACAGATAAGCTCCATGAAGACCTTTTCTTACATTTGGTTGTGGAAGTTGCAAATGAAGCCGGTGCAACTGATGGCAAAACTATTAAAGTGTCGTTTGATTCGTTGTTTCTTGGACCGGTTGAGAAGCTTCTCCTTTTGATGCAAGATAAGTTCCCGGACTTGAGTTTAGACCACAGCAATTGCACTGAAATGAGTTGGATCCAGTCTGTGATGTACTTTGCTGGCTTCCCAATAAGCGAATATTTGGAAGTTTTGCTGAAAAGGACTCAGCCATCTAGGAGCTTCTTCAAAGCAAAATCGGACAATGTGACGCAACACATTTCACAAGCTGGCTTGGAAGGTTTGTGGCAAAGACTACTTGAAGTAGAGACATCCCAGTTGATATTGGCACCTTACGGTGGAAGAATGAGTGAGATATCTTATTCAGAAACTCCTTTCCCACATAGAAATGGAAGTATATTTGCAATCCAGTATTTGGTCACTTGGGATGATGACAAGGAAACTGAGAAACATATTAGCTGGATGAGAAGGGTGTATGCCTACATGGCATCACATGTTTCAAAGTCCCCAAGAGCTGCCTATTTGAACTATAGGGATTCTTTCTCTTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
BBE FAD_binding_4

Protein Analysis

226

Amino Acids

25.94

Weight (kDa)

8.74

Isoelectric Point (pI)

51.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 454
AccB7I CCANNNNNTGG 1 cut(s) 541
AclWI GGATC 2 cut(s) 259, 272
AfaI GTAC 1 cut(s) 281
AfiI CCNNNNNNNGG 2 cut(s) 464, 541
AflIII ACRYGT 1 cut(s) 619
AgeI ACCGGT 1 cut(s) 181
AgsI TTSAA 4 cut(s) 355, 428, 627, 652
AluBI AGCT 6 cut(s) 76, 193, 348, 395, 585, 641
AluI AGCT 6 cut(s) 76, 193, 348, 395, 585, 641
Alw26I GTCTC 1 cut(s) 428
AlwI GGATC 2 cut(s) 259, 272
ApeKI GCWGC 1 cut(s) 641
AsiGI ACCGGT 1 cut(s) 181
AspS9I GGNCC 1 cut(s) 179
AsuC2I CCSGG 1 cut(s) 221
AsuHPI GGTGA 1 cut(s) 67
AvaII GGWCC 1 cut(s) 179
BamHI GGATCC 1 cut(s) 264
BanI GGYRCC 1 cut(s) 454
BbsI GAAGAC 1 cut(s) 90
BbvI GCAGC 1 cut(s) 628
BccI CCATC 2 cut(s) 131, 346
BcnI CCSGG 1 cut(s) 221
BcoDI GTCTC 1 cut(s) 428
BfaI CTAG 1 cut(s) 342
BfmI CTRYAG 1 cut(s) 655
BglI GCCNNNNNGGC 1 cut(s) 611
BisI GCNGC 1 cut(s) 642
BlsI GCNGC 1 cut(s) 643
Bme1390I CCNGG 1 cut(s) 221
Bme18I GGWCC 1 cut(s) 179
BmgT120I GGNCC 1 cut(s) 179
BmiI GGNNCC 2 cut(s) 266, 456
BmrFI CCNGG 1 cut(s) 221
BmrI ACTGGG 1 cut(s) 436
BmsI GCATC 2 cut(s) 195, 623
BmuI ACTGGG 1 cut(s) 436
BpiI GAAGAC 1 cut(s) 90
BpuEI CTTGAG 1 cut(s) 247
BpuMI CCSGG 1 cut(s) 221
BsaWI WCCGGW 1 cut(s) 181
Bsc4I CCNNNNNNNGG 2 cut(s) 464, 541
Bse118I RCCGGY 2 cut(s) 125, 181
Bse1I ACTGG 3 cut(s) 268, 442, 535
BseGI GGATG 3 cut(s) 437, 559, 594
BseLI CCNNNNNNNGG 2 cut(s) 464, 541
BseMII CTCAG 2 cut(s) 347, 561
BseNI ACTGG 3 cut(s) 268, 442, 535
BseXI GCAGC 1 cut(s) 628
BshNI GGYRCC 1 cut(s) 454
BshTI ACCGGT 1 cut(s) 181
BsiSI CCGG 3 cut(s) 126, 182, 221
BslFI GGGAC 1 cut(s) 616
BslI CCNNNNNNNGG 2 cut(s) 464, 541
BsmAI GTCTC 1 cut(s) 428
BsmFI GGGAC 1 cut(s) 616
Bsp143I GATC 1 cut(s) 264
BspCNI CTCAG 2 cut(s) 346, 562
BspLI GGNNCC 2 cut(s) 266, 456
BspPI GGATC 2 cut(s) 259, 272
BspT107I GGYRCC 1 cut(s) 454
BsrFI RCCGGY 2 cut(s) 125, 181
BsrI ACTGG 3 cut(s) 268, 442, 535
BssAI RCCGGY 2 cut(s) 125, 181
BssMI GATC 1 cut(s) 264
Bst4CI ACNGT 1 cut(s) 464
Bst6I CTCTTC 1 cut(s) 31
BstC8I GCNNGC 2 cut(s) 289, 397
BstDEI CTNAG 2 cut(s) 333, 570
BstF5I GGATG 3 cut(s) 437, 559, 594
BstKTI GATC 1 cut(s) 267
BstMAI GTCTC 1 cut(s) 428
BstMBI GATC 1 cut(s) 264
BstMWI GCNNNNNNNGC 2 cut(s) 122, 611
BstNSI RCATGY 1 cut(s) 623
BstSCI CCNGG 1 cut(s) 219
BstSFI CTRYAG 1 cut(s) 655
BstV1I GCAGC 1 cut(s) 628
BstV2I GAAGAC 1 cut(s) 90
BstX2I RGATCY 1 cut(s) 264
BstYI RGATCY 1 cut(s) 264
BtsCI GGATG 3 cut(s) 437, 559, 594
BtsIMutI CAGTG 1 cut(s) 249
Cac8I GCNNGC 2 cut(s) 289, 397
Cfr10I RCCGGY 2 cut(s) 125, 181
Cfr13I GGNCC 1 cut(s) 179
CseI GACGC 1 cut(s) 385
Csp6I GTAC 1 cut(s) 280
CspAI ACCGGT 1 cut(s) 181
CspCI CAANNNNNGTGG 2 cut(s) 227, 262
CviAII CATG 3 cut(s) 80, 610, 620
CviQI GTAC 1 cut(s) 280
DdeI CTNAG 2 cut(s) 333, 570
DpnI GATC 1 cut(s) 266
DpnII GATC 1 cut(s) 264
Eam1104I CTCTTC 1 cut(s) 31
EarI CTCTTC 1 cut(s) 31
Eco32I GATATC 1 cut(s) 483
Eco47I GGWCC 1 cut(s) 179
EcoRV GATATC 1 cut(s) 483
FaeI CATG 3 cut(s) 83, 613, 623
FaiI YATR 8 cut(s) 81, 510, 524, 579, 603, 611, 621, 657
FaqI GGGAC 1 cut(s) 616
FatI CATG 3 cut(s) 79, 609, 619
Fnu4HI GCNGC 1 cut(s) 642
FokI GGATG 3 cut(s) 424, 566, 601
Fsp4HI GCNGC 1 cut(s) 642
FspBI CTAG 1 cut(s) 342
GluI GCNGC 1 cut(s) 642
HapII CCGG 3 cut(s) 126, 182, 221
HgaI GACGC 1 cut(s) 385
Hin1II CATG 3 cut(s) 83, 613, 623
HindIII AAGCTT 1 cut(s) 191
HinfI GANTC 3 cut(s) 164, 331, 662
HpaII CCGG 3 cut(s) 126, 182, 221
HphI GGTGA 1 cut(s) 67
Hpy188I TCNGA 2 cut(s) 367, 493
HpyAV CCTTC 3 cut(s) 35, 398, 588
HpyCH4III ACNGT 1 cut(s) 464
HpyCH4V TGCA 5 cut(s) 116, 131, 208, 249, 530
HpyF10VI GCNNNNNNNGC 2 cut(s) 122, 611
HpyF3I CTNAG 2 cut(s) 333, 570
Hsp92II CATG 3 cut(s) 83, 613, 623
Kzo9I GATC 1 cut(s) 264
LmnI GCTCC 2 cut(s) 81, 345
LpnPI CCDG 9 cut(s) 139, 195, 234, 273, 281, 381, 455, 548, 571
Lsp1109I GCAGC 1 cut(s) 628
LweI GCATC 2 cut(s) 195, 623
MaeI CTAG 1 cut(s) 342
MaeIII GTNAC 3 cut(s) 64, 373, 544
MalI GATC 1 cut(s) 266
MboI GATC 1 cut(s) 264
MboII GAAGA 7 cut(s) 16, 21, 48, 57, 95, 343, 480
MfeI CAATTG 1 cut(s) 244
MflI RGATCY 1 cut(s) 264
MluCI AATT 1 cut(s) 244
MlyI GAGTC 1 cut(s) 325
MmeI TCCRAC 1 cut(s) 242
MnlI CCTC 2 cut(s) 13, 45
MseI TTAA 1 cut(s) 150
MslI CAYNNNNRTG 2 cut(s) 254, 513
MspI CCGG 3 cut(s) 126, 182, 221
MspR9I CCNGG 1 cut(s) 221
MunI CAATTG 1 cut(s) 244
MwoI GCNNNNNNNGC 2 cut(s) 122, 611
NciI CCSGG 1 cut(s) 221
NdeII GATC 1 cut(s) 264
NlaIII CATG 3 cut(s) 83, 613, 623
NlaIV GGNNCC 2 cut(s) 266, 456
NmuCI GTSAC 2 cut(s) 373, 544
NspI RCATGY 1 cut(s) 623
PciI ACATGT 1 cut(s) 619
PcsI WCGNNNNNNNCGW 1 cut(s) 164
PfeI GAWTC 2 cut(s) 164, 662
PflMI CCANNNNNTGG 1 cut(s) 541
PfoI TCCNGGA 1 cut(s) 219
PinAI ACCGGT 1 cut(s) 181
PkrI GCNGC 1 cut(s) 643
PleI GAGTC 1 cut(s) 325
PpsI GAGTC 1 cut(s) 325
PscI ACATGT 1 cut(s) 619
PspN4I GGNNCC 2 cut(s) 266, 456
PspPI GGNCC 1 cut(s) 179
PsuI RGATCY 1 cut(s) 264
RsaI GTAC 1 cut(s) 281
RsaNI GTAC 1 cut(s) 280
RseI CAYNNNNRTG 2 cut(s) 254, 513
SaqAI TTAA 1 cut(s) 150
SatI GCNGC 1 cut(s) 642
Sau3AI GATC 1 cut(s) 264
Sau96I GGNCC 1 cut(s) 179
SchI GAGTC 1 cut(s) 325
ScrFI CCNGG 1 cut(s) 221
SfaNI GCATC 2 cut(s) 195, 623
SfcI CTRYAG 1 cut(s) 655
SinI GGWCC 1 cut(s) 179
SmiMI CAYNNNNRTG 2 cut(s) 254, 513
SmlI CTYRAG 1 cut(s) 226
SmoI CTYRAG 1 cut(s) 226
Sse9I AATT 1 cut(s) 244
SspI AATATT 1 cut(s) 308
SspMI CTAG 1 cut(s) 342
StyD4I CCNGG 1 cut(s) 219
TaaI ACNGT 1 cut(s) 464
TasI AATT 1 cut(s) 244
TatI WGTACW 1 cut(s) 279
TfiI GAWTC 2 cut(s) 164, 662
Tru1I TTAA 1 cut(s) 150
Tru9I TTAA 1 cut(s) 150
TscAI CASTG 1 cut(s) 256
TseFI GTSAC 2 cut(s) 373, 544
TseI GCWGC 1 cut(s) 641
Tsp45I GTSAC 2 cut(s) 373, 544
TspDTI ATGAA 4 cut(s) 17, 29, 96, 135
TspRI CASTG 1 cut(s) 256
Van91I CCANNNNNTGG 1 cut(s) 541
VpaK11BI GGWCC 1 cut(s) 179
XceI RCATGY 1 cut(s) 623
XspI CTAG 1 cut(s) 342
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.