AT5G44360

Belongs to the oxygen-dependent FAD-linked oxidoreductase family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Reverse (-)
17871924 .. 17873829
1906 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G44360.1

Sequence Viewer

Length: 1599 bp
ATGAGAACACTTGAAGCTTTTGCTCTGTCCCTGTTTCTTGTCTTCTTAGTAAAATGGGTCAATTCTGACTCTAGTTCTTCTCCTAGTAAAGATCAATTTCTGAGTTGCATGTCGACACATTCTGATTCCAGCTTCATAAACCCTAAAAGCTTCATCCACAAACCAGATTCAAGAGTCTACACCGATTTCTCGCAGTCTTTAATATCACAAAACTACAGATTTCTGACCTTGAATTTCACAAGCCAGAAGCCGATTCTGATCGTTACACCAAGAACTGATACTGAAATCCAGAGATCATTACTCTGTAGCAGGAAACTTGGGGTGAAAGTAAGAACCAAAAGCGGTGGTCATGACTATGAAGGCCTTTCTTATCTCTCATTACACTCGCCTTTCATCATACTCGATCTCGTTAATGTTCGATCGATCGAGATCAACCTGGCAGATGAAACAGCTTGGGTTGGAGCCGGTGCCACTATCGGTGAGCTTTACTATAAAATTGCCAAATCAAGTAAGATCCATGGCTTCCCTGCAGGAACATGCCCTAGTGTTGGAGTTGGAGGTCATTTTAGCGGAGGAGGGTTTGGTGCAATGATGAGGAAACATGGTTTAGCTGCAGATAACGTTGTGGACGCGCGTTTTGTAGACGCAAATGGGAGGATCTACAACAGTAGGAGAGAAATGGGAGAAGATTTGTTCTGGGCCATTAGAGGAGGTGGAGCAGCTAGCTTTGGTGTTGTACTTTCATGGAAAGTGAAGCTAGTTAGGGTTCCAGAAAAGGTTACGTGCTTCAGAAGGAACCTACCGTTGACACAGAACATGACGAAAATTGTTCATAGATGGCAGCAAATTGCAGCAGAGCTTGACGATAATCTCTTCATCCGAGTCATCGTTTCCATTTCCGGAGGATCAGTTCAAACTACATTCCAAGCAAATTATCTTGGAGGAATCGATAAACTAATTCCTCTGATGAATCAGAAGTTTCCGGAATTAGGGTTAACGTTTCAAGACTGTTCGGAAATGACCTGGATCGATTCAATAATGTACTTCAACTGGAAGAAAGGACAACCACTAGAGACTCTTCTGGATCGAGGACAAAGATACAATGATCTGTATTTCAAAGCCAAATCTGATTTTGTCAAGAACCCTATTCCTGAAATCGGTCTAGAAGGTATATGGACGAGGTTTCACGAGGTCGAATCTCCGATAATGATAATGGAGCCATTAGGTGGTAAAATGTATGAGATTGGTGAAACAGAGACTCCATTCCCACATAGAAGAGGGAATCTATATAATATCCAGTATATGGTTAAATGGAGATTGAAGGACATTGGAGTGATGGAGAAACATGTGACATGGATGAGATTGCTTTATAGGTATATGAGAGTTTATGTCTCTGCATCGCCAAGAGGAGCTTATTTGAATTACCGAGATCTTGATTTAGGTATGAACAGAGGAGTTAATACGAGCTTTGAAGATGCGAAATTATGGGGGTTTAGGTATTTTGGAAGTAATTTCAAGAGATTGGCTATTGTTAAAGGGAAGATTGATCCAACCAATTTCTTCAGGAATGAACAAAGTGTTCCTCCTTTGATTGTCTAA

Protein Analysis

532

Amino Acids

60.5

Weight (kDa)

9.41

Isoelectric Point (pI)

32.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAD_binding_4 PF01565 84 - 221 4.8e-24 FAD binding domain
BBE PF08031 471 - 528 4.5e-19 Berberine and berberine like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 467
AccB7I CCANNNNNTGG 2 cut(s) 1226, 1303
AccI GTMKAC 3 cut(s) 113, 177, 642
AccII CGCG 2 cut(s) 632, 634
AccIII TCCGGA 2 cut(s) 899, 982
AciI CCGC 2 cut(s) 342, 570
AclI AACGTT 2 cut(s) 621, 998
AclWI GGATC 6 cut(s) 508, 665, 913, 1034, 1092, 1541
AcsI RAATTY 1 cut(s) 232
AcuI CTGAAG 2 cut(s) 772, 1546
AfaI GTAC 2 cut(s) 738, 1043
AfiI CCNNNNNNNGG 5 cut(s) 548, 989, 1157, 1226, 1303
AflIII ACRYGT 1 cut(s) 1345
AjnI CCWGG 2 cut(s) 435, 1022
AloI GAACNNNNNNTCC 2 cut(s) 894, 926
Alw26I GTCTC 3 cut(s) 1067, 1250, 1396
AlwI GGATC 6 cut(s) 508, 665, 913, 1034, 1092, 1541
Aor13HI TCCGGA 2 cut(s) 899, 982
AoxI GGCC 2 cut(s) 361, 699
ApeKI GCWGC 4 cut(s) 611, 719, 841, 851
ApoI RAATTY 1 cut(s) 232
ArsI GACNNNNNNTTYG 2 cut(s) 620, 652
AspLEI GCGC 1 cut(s) 634
AspS9I GGNCC 1 cut(s) 699
AsuHPI GGTGA 3 cut(s) 334, 491, 1259
AsuNHI GCTAGC 1 cut(s) 722
BanI GGYRCC 1 cut(s) 467
BauI CACGAG 1 cut(s) 1187
BbsI GAAGAC 1 cut(s) 34
BbvI GCAGC 4 cut(s) 598, 731, 853, 863
BccI CCATC 2 cut(s) 831, 1330
BciT130I CCWGG 2 cut(s) 437, 1024
BcoDI GTCTC 3 cut(s) 1067, 1250, 1396
BfaI CTAG 7 cut(s) 72, 84, 543, 723, 758, 1070, 1163
BfmI CTRYAG 4 cut(s) 214, 304, 528, 612
BglII AGATCT 1 cut(s) 1429
BisI GCNGC 4 cut(s) 612, 720, 842, 852
BlsI GCNGC 4 cut(s) 613, 721, 843, 853
Bme1390I CCNGG 2 cut(s) 437, 1024
BmgT120I GGNCC 1 cut(s) 699
BmiI GGNNCC 5 cut(s) 463, 469, 768, 797, 1218
BmrFI CCNGG 2 cut(s) 437, 1024
BmsI GCATC 2 cut(s) 1406, 1465
BmtI GCTAGC 1 cut(s) 726
BpiI GAAGAC 1 cut(s) 34
Bsa29I ATCGAT 3 cut(s) 422, 948, 1029
BsaAI YACGTR 1 cut(s) 783
BsaBI GATNNNNATC 2 cut(s) 257, 428
BsaJI CCNNGG 1 cut(s) 517
BsaWI WCCGGW 2 cut(s) 899, 982
BsaXI ACNNNNNCTCC 4 cut(s) 894, 924, 1243, 1273
Bsc4I CCNNNNNNNGG 5 cut(s) 548, 989, 1157, 1226, 1303
Bse118I RCCGGY 1 cut(s) 464
Bse1I ACTGG 2 cut(s) 1055, 1297
Bse3DI GCAATG 1 cut(s) 594
Bse8I GATNNNNATC 2 cut(s) 257, 428
BseAI TCCGGA 2 cut(s) 899, 982
BseBI CCWGG 2 cut(s) 437, 1024
BseCI ATCGAT 3 cut(s) 422, 948, 1029
BseDI CCNNGG 1 cut(s) 517
BseGI GGATG 3 cut(s) 153, 876, 1362
BseJI GATNNNNATC 2 cut(s) 257, 428
BseLI CCNNNNNNNGG 5 cut(s) 548, 989, 1157, 1226, 1303
BseMI GCAATG 1 cut(s) 594
BseMII CTCAG 1 cut(s) 92
BseNI ACTGG 2 cut(s) 1055, 1297
BseRI GAGGAG 4 cut(s) 588, 723, 1422, 1467
BseXI GCAGC 4 cut(s) 598, 731, 853, 863
Bsh1236I CGCG 2 cut(s) 632, 634
Bsh1285I CGRYCG 2 cut(s) 422, 426
BshFI GGCC 2 cut(s) 363, 701
BshNI GGYRCC 1 cut(s) 467
BshVI ATCGAT 3 cut(s) 422, 948, 1029
BsiEI CGRYCG 2 cut(s) 422, 426
BsiSI CCGG 3 cut(s) 465, 900, 983
BslFI GGGAC 1 cut(s) 13
BslI CCNNNNNNNGG 5 cut(s) 548, 989, 1157, 1226, 1303
BsmAI GTCTC 3 cut(s) 1067, 1250, 1396
BsmFI GGGAC 1 cut(s) 13
BsnI GGCC 2 cut(s) 363, 701
Bsp13I TCCGGA 2 cut(s) 899, 982
Bsp19I CCATGG 1 cut(s) 517
BspACI CCGC 2 cut(s) 342, 570
BspANI GGCC 2 cut(s) 363, 701
BspCNI CTCAG 1 cut(s) 93
BspDI ATCGAT 3 cut(s) 422, 948, 1029
BspEI TCCGGA 2 cut(s) 899, 982
BspFNI CGCG 2 cut(s) 632, 634
BspHI TCATGA 1 cut(s) 349
BspLI GGNNCC 5 cut(s) 463, 469, 768, 797, 1218
BspMAI CTGCAG 2 cut(s) 532, 616
BspOI GCTAGC 1 cut(s) 726
BspPI GGATC 6 cut(s) 508, 665, 913, 1034, 1092, 1541
BspT107I GGYRCC 1 cut(s) 467
BsrDI GCAATG 1 cut(s) 594
BsrFI RCCGGY 1 cut(s) 464
BsrI ACTGG 2 cut(s) 1055, 1297
BssAI RCCGGY 1 cut(s) 464
BssECI CCNNGG 1 cut(s) 517
BssSI CACGAG 1 cut(s) 1187
BssT1I CCWWGG 1 cut(s) 517
Bst2BI CACGAG 1 cut(s) 1187
Bst2UI CCWGG 2 cut(s) 437, 1024
Bst4CI ACNGT 3 cut(s) 668, 804, 1010
Bst6I CTCTTC 3 cut(s) 878, 1083, 1270
BstBAI YACGTR 1 cut(s) 783
BstC8I GCNNGC 1 cut(s) 724
BstDEI CTNAG 2 cut(s) 46, 101
BstDSI CCRYGG 1 cut(s) 517
BstF5I GGATG 3 cut(s) 153, 876, 1362
BstFNI CGCG 2 cut(s) 632, 634
BstHHI GCGC 1 cut(s) 634
BstMAI GTCTC 3 cut(s) 1067, 1250, 1396
BstMCI CGRYCG 2 cut(s) 422, 426
BstNI CCWGG 2 cut(s) 437, 1024
BstNSI RCATGY 3 cut(s) 112, 540, 1349
BstSCI CCNGG 2 cut(s) 435, 1022
BstSFI CTRYAG 4 cut(s) 214, 304, 528, 612
BstUI CGCG 2 cut(s) 632, 634
BstV1I GCAGC 4 cut(s) 598, 731, 853, 863
BstV2I GAAGAC 1 cut(s) 34
BstX2I RGATCY 3 cut(s) 513, 657, 1429
BstYI RGATCY 3 cut(s) 513, 657, 1429
Bsu15I ATCGAT 3 cut(s) 422, 948, 1029
BsuRI GGCC 2 cut(s) 363, 701
BsuTUI ATCGAT 3 cut(s) 422, 948, 1029
BtgI CCRYGG 1 cut(s) 517
BtgZI GCGATG 1 cut(s) 1383
BtsCI GGATG 3 cut(s) 153, 876, 1362
Cac8I GCNNGC 1 cut(s) 724
CciI TCATGA 1 cut(s) 349
CfoI GCGC 1 cut(s) 634
Cfr10I RCCGGY 1 cut(s) 464
Cfr13I GGNCC 1 cut(s) 699
ClaI ATCGAT 3 cut(s) 422, 948, 1029
CseI GACGC 2 cut(s) 638, 653
Csp6I GTAC 2 cut(s) 737, 1042
CspCI CAANNNNNGTGG 2 cut(s) 325, 360
CviAII CATG 9 cut(s) 109, 350, 518, 537, 602, 744, 817, 1346, 1353
CviQI GTAC 2 cut(s) 737, 1042
DdeI CTNAG 2 cut(s) 46, 101
Eam1104I CTCTTC 3 cut(s) 878, 1083, 1270
EarI CTCTTC 3 cut(s) 878, 1083, 1270
Eco130I CCWWGG 1 cut(s) 517
Eco147I AGGCCT 1 cut(s) 363
Eco57I CTGAAG 2 cut(s) 772, 1546
EcoRII CCWGG 2 cut(s) 435, 1022
EcoT14I CCWWGG 1 cut(s) 517
ErhI CCWWGG 1 cut(s) 517
FaeI CATG 9 cut(s) 112, 353, 521, 540, 605, 747, 820, 1349, 1356
FalI AAGNNNNNCTT 2 cut(s) 1396, 1428
FaqI GGGAC 1 cut(s) 13
FatI CATG 9 cut(s) 108, 349, 517, 536, 601, 743, 816, 1345, 1352
FblI GTMKAC 3 cut(s) 113, 177, 642
Fnu4HI GCNGC 4 cut(s) 612, 720, 842, 852
FokI GGATG 3 cut(s) 140, 863, 1369
Fsp4HI GCNGC 4 cut(s) 612, 720, 842, 852
FspBI CTAG 7 cut(s) 72, 84, 543, 723, 758, 1070, 1163
GlaI GCGC 1 cut(s) 633
GluI GCNGC 4 cut(s) 612, 720, 842, 852
HaeIII GGCC 2 cut(s) 363, 701
HapII CCGG 3 cut(s) 465, 900, 983
HgaI GACGC 2 cut(s) 638, 653
HhaI GCGC 1 cut(s) 634
Hin1II CATG 9 cut(s) 112, 353, 521, 540, 605, 747, 820, 1349, 1356
Hin6I GCGC 1 cut(s) 632
HinP1I GCGC 1 cut(s) 632
HincII GTYRAC 3 cut(s) 114, 807, 996
HindII GTYRAC 3 cut(s) 114, 807, 996
HindIII AAGCTT 2 cut(s) 15, 148
HpaI GTTAAC 1 cut(s) 996
HpaII CCGG 3 cut(s) 465, 900, 983
HphI GGTGA 3 cut(s) 334, 491, 1259
Hpy166II GTNNAC 6 cut(s) 114, 178, 628, 643, 807, 996
Hpy8I GTNNAC 6 cut(s) 114, 178, 628, 643, 807, 996
HpyAV CCTTC 4 cut(s) 353, 786, 1160, 1315
HpyCH4III ACNGT 3 cut(s) 668, 804, 1010
HpyCH4IV ACGT 3 cut(s) 621, 782, 998
HpyCH4V TGCA 6 cut(s) 108, 530, 587, 614, 851, 1397
HpyF3I CTNAG 2 cut(s) 46, 101
HpySE526I ACGT 3 cut(s) 621, 782, 998
Hsp92II CATG 9 cut(s) 112, 353, 521, 540, 605, 747, 820, 1349, 1356
HspAI GCGC 1 cut(s) 632
Kpn2I TCCGGA 2 cut(s) 899, 982
KspAI GTTAAC 1 cut(s) 996
LmnI GCTCC 4 cut(s) 461, 716, 1216, 1409
Lsp1109I GCAGC 4 cut(s) 598, 731, 853, 863
LweI GCATC 2 cut(s) 1406, 1465
MaeI CTAG 7 cut(s) 72, 84, 543, 723, 758, 1070, 1163
MaeII ACGT 3 cut(s) 621, 782, 998
MaeIII GTNAC 3 cut(s) 262, 778, 1348
MflI RGATCY 3 cut(s) 513, 657, 1429
MlyI GAGTC 5 cut(s) 62, 183, 891, 1069, 1252
MmeI TCCRAC 4 cut(s) 439, 529, 535, 1574
MroI TCCGGA 2 cut(s) 899, 982
MseI TTAA 6 cut(s) 200, 411, 995, 1308, 1458, 1533
MslI CAYNNNNRTG 2 cut(s) 354, 1331
MspI CCGG 3 cut(s) 465, 900, 983
MspR9I CCNGG 2 cut(s) 437, 1024
MvaI CCWGG 2 cut(s) 437, 1024
MvnI CGCG 2 cut(s) 632, 634
NcoI CCATGG 1 cut(s) 517
NheI GCTAGC 1 cut(s) 722
NlaIII CATG 9 cut(s) 112, 353, 521, 540, 605, 747, 820, 1349, 1356
NlaIV GGNNCC 5 cut(s) 463, 469, 768, 797, 1218
NmuCI GTSAC 1 cut(s) 1348
NspI RCATGY 3 cut(s) 112, 540, 1349
PagI TCATGA 1 cut(s) 349
PceI AGGCCT 1 cut(s) 363
PciI ACATGT 1 cut(s) 1345
PfeI GAWTC 8 cut(s) 125, 167, 253, 945, 970, 1031, 1196, 1282
PflMI CCANNNNNTGG 2 cut(s) 1226, 1303
PkrI GCNGC 4 cut(s) 613, 721, 843, 853
Ple19I CGATCG 2 cut(s) 422, 426
PleI GAGTC 5 cut(s) 62, 182, 890, 1069, 1252
PpsI GAGTC 5 cut(s) 62, 182, 890, 1069, 1252
Ppu21I YACGTR 1 cut(s) 783
PscI ACATGT 1 cut(s) 1345
Psp1406I AACGTT 2 cut(s) 621, 998
Psp6I CCWGG 2 cut(s) 435, 1022
PspGI CCWGG 2 cut(s) 435, 1022
PspN4I GGNNCC 5 cut(s) 463, 469, 768, 797, 1218
PspPI GGNCC 1 cut(s) 699
PstI CTGCAG 2 cut(s) 532, 616
PsuI RGATCY 3 cut(s) 513, 657, 1429
PvuI CGATCG 2 cut(s) 422, 426
RsaI GTAC 2 cut(s) 738, 1043
RsaNI GTAC 2 cut(s) 737, 1042
RseI CAYNNNNRTG 2 cut(s) 354, 1331
SalI GTCGAC 1 cut(s) 112
SaqAI TTAA 6 cut(s) 200, 411, 995, 1308, 1458, 1533
SatI GCNGC 4 cut(s) 612, 720, 842, 852
Sau96I GGNCC 1 cut(s) 699
SbfI CCTGCAGG 1 cut(s) 532
SchI GAGTC 5 cut(s) 62, 183, 891, 1069, 1252
ScrFI CCNGG 2 cut(s) 437, 1024
SdaI CCTGCAGG 1 cut(s) 532
SfaNI GCATC 2 cut(s) 1406, 1465
SfcI CTRYAG 4 cut(s) 214, 304, 528, 612
SmiMI CAYNNNNRTG 2 cut(s) 354, 1331
Sse8387I CCTGCAGG 1 cut(s) 532
SseBI AGGCCT 1 cut(s) 363
SsiI CCGC 2 cut(s) 342, 570
SspMI CTAG 7 cut(s) 72, 84, 543, 723, 758, 1070, 1163
StuI AGGCCT 1 cut(s) 363
StyD4I CCNGG 2 cut(s) 435, 1022
StyI CCWWGG 1 cut(s) 517
TaaI ACNGT 3 cut(s) 668, 804, 1010
TaiI ACGT 3 cut(s) 624, 785, 1001
TaqI TCGA 9 cut(s) 113, 402, 418, 422, 426, 948, 1029, 1087, 1194
TaqII GACCGA 1 cut(s) 1148
TatI WGTACW 2 cut(s) 736, 1041
TfiI GAWTC 8 cut(s) 125, 167, 253, 945, 970, 1031, 1196, 1282
Tru1I TTAA 6 cut(s) 200, 411, 995, 1308, 1458, 1533
Tru9I TTAA 6 cut(s) 200, 411, 995, 1308, 1458, 1533
TseFI GTSAC 1 cut(s) 1348
TseI GCWGC 4 cut(s) 611, 719, 841, 851
Tsp45I GTSAC 1 cut(s) 1348
Van91I CCANNNNNTGG 2 cut(s) 1226, 1303
XapI RAATTY 1 cut(s) 232
XbaI TCTAGA 1 cut(s) 1162
XceI RCATGY 3 cut(s) 112, 540, 1349
XmiI GTMKAC 3 cut(s) 113, 177, 642
XspI CTAG 7 cut(s) 72, 84, 543, 723, 758, 1070, 1163
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.