Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005192.1

Orthogroup ID

OG0000925

Physical Location & Seq

Genomic Coordinates Forward (+)

1416 .. 2413

Gene Structure 998 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005192.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

atgaatatggagacctttcatgtaaaactgttttccctacttttcgtccttctcaactcaatttggtccacaacttcaacatcaaattctgaaagctttgttcaatgcttttcctcccacctacagaactcaaactccagtaacgaaatcatactcaccagaaccagttctgcttatccctcagtcttagatttttccatacacaacttcagattcttgaacaattccacaccaaaaccagaggccatcattactccttttgatgaatctcaggttcaagcagctgtaatttgctccaagaaaagtggcatacaaataagaatccgaagcggggggcatgattacgagggcctatcttatgtatccagagctcctttcatcatcattgatcttttcaatctccgttccatcgatgttgatataaagaatgagagtgcttgggtccaatcaggcgctactctcggagagttgtattacaacattgcacagaagagtaaagtctatggctttccagcagggacttgtcccaccgtcggtgttgggggacacatcagtgggggtggatatggaaccatattccgaaaatatggtctagcatccgacaatgtcgttgatgctagaattgtagatgttaacggcagaattctagacagaaagtccatgggagaagagctcttttgggctatcagaggaggaggaggatcaagctttggagtcattctagcatggagacttagaatggttcctgttcccccaactgcaacagtttgcgacgttacaaagacaaaagaacaaggtgcaaccaaacttcttttgaaatggcaaaacattgcagacaagcttccggaagaccttttcctacattctgttgtaggaagtagtgacaacgctattacagttgaattcggaaaacttcccagagttgagtttagagagcagccattgcagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

BBE FAD_binding_4

Protein Analysis

316

Amino Acids

34.78

Weight (kDa)

7.69

Isoelectric Point (pI)

36.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000925)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20820 AT5G44360 AT5G44360 AT5G44410 AT5G44440 AT5G44440
fragaria_vesca	FvH4_3g10860 FvH4_3g10930 FvH4_3g10940 FvH4_3g10940 FvH4_3g10941
malus_domestica	MD05G1267700.v1.1 MD05G1267800.v1.1 MD05G1267900.v1.1 MD05G1268000.v1.1 MD05G1268100.v1.1 MD05G1268200.v1.1 MD10G1244300.v1.1
prunus_persica	Prupe.4G092500_v2.0.a1 Prupe.4G096500_v2.0.a1 Prupe.4G096600_v2.0.a1 Prupe.4G096700_v2.0.a1 Prupe.4G096900_v2.0.a1 Prupe.4G097000_v2.0.a1 Prupe.4G097100_v2.0.a1 Prupe.4G097200_v2.0.a1 Prupe.4G097300_v2.0.a1 Prupe.4G097500_v2.0.a1 Prupe.4G097700_v2.0.a1 Prupe.4G097800_v2.0.a1 Prupe.4G098200_v2.0.a1
pyrus_communis	pycom05g25090 pycom05g25120 pycom10g20430 pycom10g20480 pycom10g20490
rosa_chinensis	RchiOBHm_Chr4g0431071 RchiOBHm_Chr4g0431081 RchiOBHm_Chr5g0017651 RchiOBHm_Chr5g0017661 RchiOBHm_Chr5g0017681 RchiOBHm_Chr5g0017691
rosa_laevigata	RLG00000006927 RLG00000032303 RLG00000032304 RLG00000032305
rosa_multiflora	Rmu_sc0000346.1_g000001 Rmu_sc0003415.1_g000006 Rmu_sc0003415.1_g000009 Rmu_sc0003592.1_g000009 Rmu_sc0005192.1_g000001 Rmu_sc0009555.1_g000002 Rmu_sc0010203.1_g000009
rosa_roxburghii	Rroxscaffold_1G00059800 Rroxscaffold_1G00059820
rosa_rugosa	Rorug05G0037300 Rorug05G0037300 Rorug05G0037300 Rorug05G0037400 Rorug05G0038600
rosa_samantha	Rh5BG129000
rosa_wichuraiana	Rw5G011340 Rw5G011350 Rw5G011430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	844
AciI	CCGC	1 cut(s)	330
AclWI	GGATC	1 cut(s)	709
AcsI	RAATTY	3 cut(s)	85, 642, 902
AcuI	CTGAAG	1 cut(s)	193
AfiI	CCNNNNNNNGG	2 cut(s)	331, 533
AgsI	TTSAA	7 cut(s)	78, 104, 220, 278, 397, 817, 902
AhdI	GACNNNNNGTC	1 cut(s)	655
AleI	CACNNNNGTG	1 cut(s)	552
AloI	GAACNNNNNNTCC	2 cut(s)	119, 151
AluBI	AGCT	6 cut(s)	96, 284, 371, 673, 708, 841
AluI	AGCT	6 cut(s)	96, 284, 371, 673, 708, 841
Alw21I	GWGCWC	2 cut(s)	373, 675
Alw26I	GTCTC	2 cut(s)	5, 724
AlwI	GGATC	1 cut(s)	709
Aor13HI	TCCGGA	1 cut(s)	844
AoxI	GGCC	2 cut(s)	243, 349
ApeKI	GCWGC	2 cut(s)	281, 937
ApoI	RAATTY	3 cut(s)	85, 642, 902
ArsI	GACNNNNNNTTYG	2 cut(s)	574, 606
Asp700I	GAANNNNTTC	1 cut(s)	166
AspLEI	GCGC	1 cut(s)	455
AspS9I	GGNCC	3 cut(s)	66, 349, 442
AsuHPI	GGTGA	1 cut(s)	148
AvaII	GGWCC	2 cut(s)	66, 442
BanII	GRGCYC	2 cut(s)	373, 675
BbsI	GAAGAC	1 cut(s)	855
Bbv12I	GWGCWC	2 cut(s)	373, 675
BbvI	GCAGC	1 cut(s)	293
BccI	CCATC	2 cut(s)	254, 416
BceAI	ACGGC	1 cut(s)	652
BciVI	GTATCC	1 cut(s)	373
BcoDI	GTCTC	2 cut(s)	5, 724
BfaI	CTAG	4 cut(s)	593, 618, 647, 722
BfmI	CTRYAG	1 cut(s)	122
BfoI	RGCGCY	1 cut(s)	456
BfuI	GTATCC	1 cut(s)	373
BisI	GCNGC	2 cut(s)	282, 938
BlsI	GCNGC	2 cut(s)	283, 939
Bme18I	GGWCC	2 cut(s)	66, 442
BmeRI	GACNNNNNGTC	1 cut(s)	655
BmgT120I	GGNCC	3 cut(s)	66, 349, 442
BmiI	GGNNCC	3 cut(s)	443, 571, 744
BmsI	GCATC	2 cut(s)	604, 605
BpiI	GAAGAC	1 cut(s)	855
BplI	GAGNNNNNCTC	2 cut(s)	657, 689
BpmI	CTGGAG	1 cut(s)	121
Bsa29I	ATCGAT	1 cut(s)	411
BsaI	GGTCTC	1 cut(s)	5
BsaJI	CCNNGG	1 cut(s)	660
BsaWI	WCCGGW	1 cut(s)	844
BsaXI	ACNNNNNCTCC	2 cut(s)	119, 149
Bsc4I	CCNNNNNNNGG	2 cut(s)	331, 533
Bse1I	ACTGG	2 cut(s)	138, 165
Bse3DI	GCAATG	3 cut(s)	480, 828, 941
BseAI	TCCGGA	1 cut(s)	844
BseCI	ATCGAT	1 cut(s)	411
BseDI	CCNNGG	1 cut(s)	660
BseGI	GGATG	1 cut(s)	596
BseLI	CCNNNNNNNGG	2 cut(s)	331, 533
BseMI	GCAATG	3 cut(s)	480, 828, 941
BseMII	CTCAG	2 cut(s)	195, 284
BseNI	ACTGG	2 cut(s)	138, 165
BseRI	GAGGAG	3 cut(s)	705, 708, 711
BseXI	GCAGC	1 cut(s)	293
BshFI	GGCC	2 cut(s)	245, 351
BshVI	ATCGAT	1 cut(s)	411
BsiHKAI	GWGCWC	2 cut(s)	373, 675
BsiSI	CCGG	1 cut(s)	845
BslFI	GGGAC	3 cut(s)	510, 532, 558
BslI	CCNNNNNNNGG	2 cut(s)	331, 533
BsmAI	GTCTC	2 cut(s)	5, 724
BsmFI	GGGAC	3 cut(s)	510, 532, 558
BsnI	GGCC	2 cut(s)	245, 351
Bso31I	GGTCTC	1 cut(s)	5
Bsp1286I	GDGCHC	2 cut(s)	373, 675
Bsp13I	TCCGGA	1 cut(s)	844
Bsp143I	GATC	2 cut(s)	388, 701
Bsp19I	CCATGG	1 cut(s)	660
BspACI	CCGC	1 cut(s)	330
BspANI	GGCC	2 cut(s)	245, 351
BspCNI	CTCAG	2 cut(s)	194, 283
BspDI	ATCGAT	1 cut(s)	411
BspEI	TCCGGA	1 cut(s)	844
BspLI	GGNNCC	3 cut(s)	443, 571, 744
BspPI	GGATC	1 cut(s)	709
BspQI	GCTCTTC	1 cut(s)	663
BspTNI	GGTCTC	1 cut(s)	5
BsrDI	GCAATG	3 cut(s)	480, 828, 941
BsrI	ACTGG	2 cut(s)	138, 165
BssECI	CCNNGG	1 cut(s)	660
BssMI	GATC	2 cut(s)	388, 701
BssT1I	CCWWGG	1 cut(s)	660
Bst4CI	ACNGT	4 cut(s)	30, 532, 766, 898
Bst6I	CTCTTC	2 cut(s)	485, 663
BstAPI	GCANNNNNTGC	1 cut(s)	943
BstDEI	CTNAG	4 cut(s)	181, 187, 270, 734
BstDSI	CCRYGG	1 cut(s)	660
BstF5I	GGATG	1 cut(s)	596
BstH2I	RGCGCY	1 cut(s)	456
BstHHI	GCGC	1 cut(s)	455
BstKTI	GATC	2 cut(s)	391, 704
BstMAI	GTCTC	2 cut(s)	5, 724
BstMBI	GATC	2 cut(s)	388, 701
BstMWI	GCNNNNNNNGC	1 cut(s)	943
BstSFI	CTRYAG	1 cut(s)	122
BstV1I	GCAGC	1 cut(s)	293
BstV2I	GAAGAC	1 cut(s)	855
Bsu15I	ATCGAT	1 cut(s)	411
BsuI	GTATCC	1 cut(s)	373
BsuRI	GGCC	2 cut(s)	245, 351
BsuTUI	ATCGAT	1 cut(s)	411
BtgI	CCRYGG	1 cut(s)	660
BtsCI	GGATG	1 cut(s)	596
BtsIMutI	CAGTG	1 cut(s)	559
CfoI	GCGC	1 cut(s)	455
Cfr13I	GGNCC	3 cut(s)	66, 349, 442
ClaI	ATCGAT	1 cut(s)	411
CspCI	CAANNNNNGTGG	2 cut(s)	286, 321
CviAII	CATG	4 cut(s)	20, 338, 661, 726
DdeI	CTNAG	4 cut(s)	181, 187, 270, 734
DpnI	GATC	2 cut(s)	390, 703
DpnII	GATC	2 cut(s)	388, 701
DriI	GACNNNNNGTC	1 cut(s)	655
Eam1104I	CTCTTC	2 cut(s)	485, 663
Eam1105I	GACNNNNNGTC	1 cut(s)	655
EarI	CTCTTC	2 cut(s)	485, 663
Ecl136II	GAGCTC	2 cut(s)	371, 673
Eco130I	CCWWGG	1 cut(s)	660
Eco24I	GRGCYC	2 cut(s)	373, 675
Eco31I	GGTCTC	1 cut(s)	5
Eco47I	GGWCC	2 cut(s)	66, 442
Eco53kI	GAGCTC	2 cut(s)	371, 673
Eco57I	CTGAAG	1 cut(s)	193
EcoICRI	GAGCTC	2 cut(s)	371, 673
EcoO109I	RGGNCCY	1 cut(s)	349
EcoRI	GAATTC	2 cut(s)	642, 902
EcoT14I	CCWWGG	1 cut(s)	660
EcoT38I	GRGCYC	2 cut(s)	373, 675
ErhI	CCWWGG	1 cut(s)	660
FaeI	CATG	4 cut(s)	23, 341, 664, 729
FaqI	GGGAC	3 cut(s)	510, 532, 558
FatI	CATG	4 cut(s)	19, 337, 660, 725
FauI	CCCGC	1 cut(s)	323
Fnu4HI	GCNGC	2 cut(s)	282, 938
FokI	GGATG	1 cut(s)	583
FriOI	GRGCYC	2 cut(s)	373, 675
Fsp4HI	GCNGC	2 cut(s)	282, 938
FspBI	CTAG	4 cut(s)	593, 618, 647, 722
GlaI	GCGC	1 cut(s)	454
GluI	GCNGC	2 cut(s)	282, 938
GsuI	CTGGAG	1 cut(s)	121
HaeII	RGCGCY	1 cut(s)	456
HaeIII	GGCC	2 cut(s)	245, 351
HapII	CCGG	1 cut(s)	845
HhaI	GCGC	1 cut(s)	455
Hin1II	CATG	4 cut(s)	23, 341, 664, 729
Hin6I	GCGC	1 cut(s)	453
HinP1I	GCGC	1 cut(s)	453
HincII	GTYRAC	1 cut(s)	634
HindII	GTYRAC	1 cut(s)	634
HindIII	AAGCTT	3 cut(s)	94, 706, 839
HinfI	GANTC	4 cut(s)	213, 266, 321, 714
HpaI	GTTAAC	1 cut(s)	634
HpaII	CCGG	1 cut(s)	845
HphI	GGTGA	1 cut(s)	148
Hpy166II	GTNNAC	2 cut(s)	69, 634
Hpy188I	TCNGA	8 cut(s)	91, 212, 326, 464, 581, 601, 689, 908
Hpy188III	TCNNGA	4 cut(s)	217, 366, 647, 845
Hpy8I	GTNNAC	2 cut(s)	69, 634
Hpy99I	CGWCG	2 cut(s)	536, 776
HpyAV	CCTTC	1 cut(s)	59
HpyCH4III	ACNGT	4 cut(s)	30, 532, 766, 898
HpyCH4IV	ACGT	1 cut(s)	774
HpyCH4V	TGCA	5 cut(s)	485, 761, 800, 833, 946
HpyF10VI	GCNNNNNNNGC	1 cut(s)	943
HpyF3I	CTNAG	4 cut(s)	181, 187, 270, 734
HpySE526I	ACGT	1 cut(s)	774
Hsp92II	CATG	4 cut(s)	23, 341, 664, 729
HspAI	GCGC	1 cut(s)	453
Kpn2I	TCCGGA	1 cut(s)	844
KspAI	GTTAAC	1 cut(s)	634
Kzo9I	GATC	2 cut(s)	388, 701
LguI	GCTCTTC	1 cut(s)	663
LmnI	GCTCC	2 cut(s)	299, 376
Lsp1109I	GCAGC	1 cut(s)	293
LweI	GCATC	2 cut(s)	604, 605
MaeI	CTAG	4 cut(s)	593, 618, 647, 722
MaeII	ACGT	1 cut(s)	774
MaeIII	GTNAC	3 cut(s)	140, 775, 881
MalI	GATC	2 cut(s)	390, 703
MboI	GATC	2 cut(s)	388, 701
MboII	GAAGA	3 cut(s)	502, 680, 860
MhlI	GDGCHC	2 cut(s)	373, 675
MluCI	AATT	7 cut(s)	60, 85, 223, 288, 621, 642, 902
MlyI	GAGTC	1 cut(s)	723
MmeI	TCCRAC	1 cut(s)	624
MnlI	CCTC	8 cut(s)	124, 190, 235, 340, 683, 686, 689, 692
MroI	TCCGGA	1 cut(s)	844
MroXI	GAANNNNTTC	1 cut(s)	166
MseI	TTAA	1 cut(s)	633
MslI	CAYNNNNRTG	2 cut(s)	552, 946
MspA1I	CMGCKG	1 cut(s)	284
MspI	CCGG	1 cut(s)	845
MwoI	GCNNNNNNNGC	1 cut(s)	943
NcoI	CCATGG	1 cut(s)	660
NdeII	GATC	2 cut(s)	388, 701
NlaIII	CATG	4 cut(s)	23, 341, 664, 729
NlaIV	GGNNCC	3 cut(s)	443, 571, 744
NmuCI	GTSAC	1 cut(s)	881
OliI	CACNNNNGTG	1 cut(s)	552
PciSI	GCTCTTC	1 cut(s)	663
PdmI	GAANNNNTTC	1 cut(s)	166
PfeI	GAWTC	3 cut(s)	213, 266, 321
PflFI	GACNNNGTC	1 cut(s)	605
PkrI	GCNGC	2 cut(s)	283, 939
PleI	GAGTC	1 cut(s)	722
PpsI	GAGTC	1 cut(s)	722
Psp124BI	GAGCTC	2 cut(s)	373, 675
PspN4I	GGNNCC	3 cut(s)	443, 571, 744
PspPI	GGNCC	3 cut(s)	66, 349, 442
PsyI	GACNNNGTC	1 cut(s)	605
PvuII	CAGCTG	1 cut(s)	284
RseI	CAYNNNNRTG	2 cut(s)	552, 946
SacI	GAGCTC	2 cut(s)	373, 675
SapI	GCTCTTC	1 cut(s)	663
SaqAI	TTAA	1 cut(s)	633
SatI	GCNGC	2 cut(s)	282, 938
Sau3AI	GATC	2 cut(s)	388, 701
Sau96I	GGNCC	3 cut(s)	66, 349, 442
SchI	GAGTC	1 cut(s)	723
SduI	GDGCHC	2 cut(s)	373, 675
SfaNI	GCATC	2 cut(s)	604, 605
SfcI	CTRYAG	1 cut(s)	122
SinI	GGWCC	2 cut(s)	66, 442
SmiMI	CAYNNNNRTG	2 cut(s)	552, 946
Sse9I	AATT	7 cut(s)	60, 85, 223, 288, 621, 642, 902
SsiI	CCGC	1 cut(s)	330
SspMI	CTAG	4 cut(s)	593, 618, 647, 722
SstI	GAGCTC	2 cut(s)	373, 675
StyI	CCWWGG	1 cut(s)	660
TaaI	ACNGT	4 cut(s)	30, 532, 766, 898
TaiI	ACGT	1 cut(s)	777
TaqI	TCGA	1 cut(s)	411
TasI	AATT	7 cut(s)	60, 85, 223, 288, 621, 642, 902
TfiI	GAWTC	3 cut(s)	213, 266, 321
Tru1I	TTAA	1 cut(s)	633
Tru9I	TTAA	1 cut(s)	633
TscAI	CASTG	1 cut(s)	559
TseFI	GTSAC	1 cut(s)	881
TseI	GCWGC	2 cut(s)	281, 937
Tsp45I	GTSAC	1 cut(s)	881
TspDTI	ATGAA	4 cut(s)	8, 17, 279, 367
TspGWI	ACGGA	1 cut(s)	392
TspRI	CASTG	1 cut(s)	559
Tth111I	GACNNNGTC	1 cut(s)	605
VpaK11BI	GGWCC	2 cut(s)	66, 442
XapI	RAATTY	3 cut(s)	85, 642, 902
XbaI	TCTAGA	1 cut(s)	646
XmnI	GAANNNNTTC	1 cut(s)	166
XspI	CTAG	4 cut(s)	593, 618, 647, 722

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.