FvH4_3g10941

Belongs to the oxygen-dependent FAD-linked oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000925
Physical Location & Seq
Reverse (-)
6479631 .. 6481211
1581 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g10941.t1

Sequence Viewer

Length: 1581 bp
ATGAATATGGAGACCTCTCATGCAAAGCTATTTCCCCTACTTTTCATCCTTCTCAACTCAGCTTGGTCCATAGCTTCAAGCTCCATTTCTGAAAGCTTTGTTCAATGCCTTTCCTCCCACATTCAGAACTCTAACTCCAGTAATGAAATCATTCTCACCAGAACCAGTTCAGCTTATCCTTCAGTGTTAGATTCTTCCATACAGAACCTCAGATTCTCGAACAATTCCACACCAAAACCAGAGGCCATCATAACTCCTTTTGATGAATCTCATGTTCAAGCAGCTGTAATTTGCTCCAAGAAAAATGGATTACAAATAAGAACACGAAGCGGGGGGCACGATTACGAGGGCCTATCTTATGTGTCCAGAGCTCCTTTCATCATCATTGATCTGTTCAATCTTCGTTCCATCGATGTTGACATAGAGAATGAGAGTGCTTGGGTCAAATCAGGTGCTACTCTTGGAGAGGTGTATTACAGCATTGCACAGAAGAGTAAAGTCTATGGCTTTCCAGCAGGGACTTGTCCCACCATTGGTGTTGGGGGACATATCAGTGGAGGTGGAATTGGAACCATATTCCGAAAATATGGTCTAGCATCTGACAATGTCATTGATGCCAGAATTGTAGATGTTAATGGCAGAATTCTAGATAGAAAGTCCATGGGAGAAGAGCTCTTTTGGGCTATCAGAGGAGGGGGTGGATCAAGCTTTGGAGTCATTCTAGCATGGAAACTTAGACTGGTTCCTGTTCCCCCTACTGTAACAGTTTGCCACATTACAAAGACAAAAGAACAAGGTGCAACCAAACTTCTTTTGAAATGGCAAAACATCGCAGACAAGCTTCCTGAAGAACTTTTCATACGTCCAGTTATAGGAAGTGGTGACGAGACTATTATAGTTGAATTCGGTTCCTTGTTTCTTGGCCCGGGTGAGAAACTTTTCCATTTGATGCAGGACAACTTCCCAGAGTTGAGTTTAGGAAGAAGCCATTGCACCGAGATGAGTTGGATTCAGTCTGTTTTAGACTTTGCTGGCTACTCGATACACGAATCCTTAGAGATTTTGCTGAAGCGCAGGCAATTCAGCATTATCTTCAAAGCAAAATCGGACTATGTGACTGAGCCAATCTCAGAAGCTGGCTTGGAAGGCTTATGGCAGAGGTTGCTTGAAGCAAACACATCCTATTTGATATTGACACCATATGGAGGAAAAATGAGTGAGATTTCCGATTCAGAAACTGCTTTCCCACATCGACGAGGAAACATATATGAAATCCAGTATATGGTTGTTTGGGATGATGGAAAGGATACTGAGAAGTATGTTGGATTTATGAGAAGGTTGTATGCATACATGGCACCGTATGTTTCAAAGTCTCCTAGAGCTGCCTATCTGAATTATAGGGATCTTGATTTGGGGAGGAACAATAATGGCAATACAAGCTATGCACAAGCAAGCATCTGGGGTTTGAAGTACTTCAAGAACAACTTCAGGAAACTTGTTCATGTTAAGACCTTGGTTGATCCTGGCAACTTCTTTAGGAATGAGCAAAGCATCCCAGTGTTTTCATCAGATAGAAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
BBE FAD_binding_4

Protein Analysis

527

Amino Acids

58.74

Weight (kDa)

8.1

Isoelectric Point (pI)

45.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAD_binding_4 PF01565 80 - 216 1.4e-25 FAD binding domain
BBE PF08031 462 - 519 2e-17 Berberine and berberine like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1354
AccB7I CCANNNNNTGG 1 cut(s) 1282
AciI CCGC 1 cut(s) 330
AclWI GGATC 3 cut(s) 709, 1410, 1514
AcsI RAATTY 2 cut(s) 642, 902
AcuI CTGAAG 4 cut(s) 165, 867, 1088, 1471
AfaI GTAC 1 cut(s) 1472
AfiI CCNNNNNNNGG 4 cut(s) 533, 872, 1205, 1282
AjnI CCWGG 1 cut(s) 1522
AloI GAACNNNNNNTCC 2 cut(s) 119, 151
Alw21I GWGCWC 2 cut(s) 373, 675
Alw26I GTCTC 3 cut(s) 5, 881, 1377
AlwI GGATC 3 cut(s) 709, 1410, 1514
AlwNI CAGNNNCTG 2 cut(s) 1136, 1238
Ama87I CYCGRG 1 cut(s) 925
AoxI GGCC 3 cut(s) 243, 349, 922
ApeKI GCWGC 2 cut(s) 281, 1382
ApoI RAATTY 2 cut(s) 642, 902
ArsI GACNNNNNNTTYG 2 cut(s) 574, 606
Asp700I GAANNNNTTC 5 cut(s) 150, 166, 938, 1472, 1484
AspLEI GCGC 1 cut(s) 1074
AspS9I GGNCC 3 cut(s) 66, 349, 923
AsuC2I CCSGG 2 cut(s) 926, 927
AsuHPI GGTGA 3 cut(s) 148, 893, 941
AvaI CYCGRG 1 cut(s) 925
AvaII GGWCC 1 cut(s) 66
BaeGI GKGCMC 1 cut(s) 339
BanI GGYRCC 1 cut(s) 1354
BanII GRGCYC 2 cut(s) 373, 675
Bbv12I GWGCWC 2 cut(s) 373, 675
BbvI GCAGC 2 cut(s) 293, 1369
BccI CCATC 3 cut(s) 254, 416, 1292
BciT130I CCWGG 1 cut(s) 1524
BciVI GTATCC 1 cut(s) 1300
BcnI CCSGG 2 cut(s) 926, 927
BcoDI GTCTC 3 cut(s) 5, 881, 1377
BfaI CTAG 4 cut(s) 593, 647, 722, 1377
BfuI GTATCC 1 cut(s) 1300
BisI GCNGC 2 cut(s) 282, 1383
BlsI GCNGC 2 cut(s) 283, 1384
BmcAI AGTACT 1 cut(s) 1472
Bme1390I CCNGG 3 cut(s) 926, 927, 1524
Bme18I GGWCC 1 cut(s) 66
BmeT110I CYCGRG 1 cut(s) 925
BmgT120I GGNCC 3 cut(s) 66, 349, 923
BmiI GGNNCC 4 cut(s) 571, 744, 910, 1356
BmrFI CCNGG 3 cut(s) 926, 927, 1524
BmrI ACTGGG 1 cut(s) 1550
BmsI GCATC 5 cut(s) 604, 605, 939, 1464, 1560
BmuI ACTGGG 1 cut(s) 1550
BplI GAGNNNNNCTC 4 cut(s) 657, 689, 1112, 1144
BpmI CTGGAG 1 cut(s) 121
BpuMI CCSGG 2 cut(s) 926, 927
Bsa29I ATCGAT 1 cut(s) 411
BsaI GGTCTC 1 cut(s) 5
BsaJI CCNNGG 3 cut(s) 660, 925, 1512
BsaXI ACNNNNNCTCC 2 cut(s) 119, 149
Bsc4I CCNNNNNNNGG 4 cut(s) 533, 872, 1205, 1282
Bse1I ACTGG 6 cut(s) 138, 165, 744, 866, 1276, 1556
Bse3DI GCAATG 2 cut(s) 480, 988
BseBI CCWGG 1 cut(s) 1524
BseCI ATCGAT 1 cut(s) 411
BseDI CCNNGG 3 cut(s) 660, 925, 1512
BseGI GGATG 4 cut(s) 45, 1178, 1300, 1551
BseLI CCNNNNNNNGG 4 cut(s) 533, 872, 1205, 1282
BseMI GCAATG 2 cut(s) 480, 988
BseMII CTCAG 5 cut(s) 72, 223, 1110, 1143, 1302
BseNI ACTGG 6 cut(s) 138, 165, 744, 866, 1276, 1556
BseRI GAGGAG 1 cut(s) 705
BseSI GKGCMC 1 cut(s) 339
BseXI GCAGC 2 cut(s) 293, 1369
BshFI GGCC 3 cut(s) 245, 351, 924
BshNI GGYRCC 1 cut(s) 1354
BshVI ATCGAT 1 cut(s) 411
BsiHKAI GWGCWC 2 cut(s) 373, 675
BsiHKCI CYCGRG 1 cut(s) 925
BsiSI CCGG 1 cut(s) 926
BslFI GGGAC 3 cut(s) 510, 532, 558
BslI CCNNNNNNNGG 4 cut(s) 533, 872, 1205, 1282
BsmAI GTCTC 3 cut(s) 5, 881, 1377
BsmFI GGGAC 3 cut(s) 510, 532, 558
BsnI GGCC 3 cut(s) 245, 351, 924
Bso31I GGTCTC 1 cut(s) 5
BsoBI CYCGRG 1 cut(s) 925
Bsp1286I GDGCHC 3 cut(s) 339, 373, 675
Bsp143I GATC 4 cut(s) 388, 701, 1402, 1519
Bsp19I CCATGG 1 cut(s) 660
BspACI CCGC 1 cut(s) 330
BspANI GGCC 3 cut(s) 245, 351, 924
BspCNI CTCAG 5 cut(s) 71, 222, 1111, 1142, 1303
BspDI ATCGAT 1 cut(s) 411
BspLI GGNNCC 4 cut(s) 571, 744, 910, 1356
BspPI GGATC 3 cut(s) 709, 1410, 1514
BspQI GCTCTTC 1 cut(s) 663
BspT107I GGYRCC 1 cut(s) 1354
BspTNI GGTCTC 1 cut(s) 5
BsrDI GCAATG 2 cut(s) 480, 988
BsrI ACTGG 6 cut(s) 138, 165, 744, 866, 1276, 1556
BssECI CCNNGG 3 cut(s) 660, 925, 1512
BssMI GATC 4 cut(s) 388, 701, 1402, 1519
BssT1I CCWWGG 2 cut(s) 660, 1512
Bst2UI CCWGG 1 cut(s) 1524
Bst4CI ACNGT 3 cut(s) 760, 766, 1359
Bst6I CTCTTC 2 cut(s) 485, 663
BstAPI GCANNNNNTGC 1 cut(s) 1162
BstC8I GCNNGC 4 cut(s) 1033, 1076, 1138, 1453
BstDEI CTNAG 7 cut(s) 58, 209, 734, 1054, 1119, 1129, 1311
BstDSI CCRYGG 1 cut(s) 660
BstF5I GGATG 4 cut(s) 45, 1178, 1300, 1551
BstHHI GCGC 1 cut(s) 1074
BstKTI GATC 4 cut(s) 391, 704, 1405, 1522
BstMAI GTCTC 3 cut(s) 5, 881, 1377
BstMBI GATC 4 cut(s) 388, 701, 1402, 1519
BstMWI GCNNNNNNNGC 4 cut(s) 1146, 1162, 1352, 1437
BstNI CCWGG 1 cut(s) 1524
BstSCI CCNGG 3 cut(s) 924, 925, 1522
BstSLI GKGCMC 1 cut(s) 339
BstV1I GCAGC 2 cut(s) 293, 1369
BstX2I RGATCY 1 cut(s) 1402
BstYI RGATCY 1 cut(s) 1402
Bsu15I ATCGAT 1 cut(s) 411
BsuI GTATCC 1 cut(s) 1300
BsuRI GGCC 3 cut(s) 245, 351, 924
BsuTUI ATCGAT 1 cut(s) 411
BtgI CCRYGG 1 cut(s) 660
BtgZI GCGATG 1 cut(s) 814
BtsCI GGATG 4 cut(s) 45, 1178, 1300, 1551
BtsIMutI CAGTG 3 cut(s) 189, 559, 1563
Cac8I GCNNGC 4 cut(s) 1033, 1076, 1138, 1453
CaiI CAGNNNCTG 2 cut(s) 1136, 1238
CfoI GCGC 1 cut(s) 1074
Cfr13I GGNCC 3 cut(s) 66, 349, 923
Cfr9I CCCGGG 1 cut(s) 925
ClaI ATCGAT 1 cut(s) 411
Csp6I GTAC 1 cut(s) 1471
CviAII CATG 6 cut(s) 20, 272, 661, 726, 1351, 1502
CviQI GTAC 1 cut(s) 1471
DdeI CTNAG 7 cut(s) 58, 209, 734, 1054, 1119, 1129, 1311
DpnI GATC 4 cut(s) 390, 703, 1404, 1521
DpnII GATC 4 cut(s) 388, 701, 1402, 1519
Eam1104I CTCTTC 2 cut(s) 485, 663
EarI CTCTTC 2 cut(s) 485, 663
Ecl136II GAGCTC 2 cut(s) 371, 673
Eco130I CCWWGG 2 cut(s) 660, 1512
Eco24I GRGCYC 2 cut(s) 373, 675
Eco31I GGTCTC 1 cut(s) 5
Eco47I GGWCC 1 cut(s) 66
Eco53kI GAGCTC 2 cut(s) 371, 673
Eco57I CTGAAG 4 cut(s) 165, 867, 1088, 1471
Eco88I CYCGRG 1 cut(s) 925
EcoICRI GAGCTC 2 cut(s) 371, 673
EcoO109I RGGNCCY 1 cut(s) 349
EcoRI GAATTC 2 cut(s) 642, 902
EcoRII CCWGG 1 cut(s) 1522
EcoT14I CCWWGG 2 cut(s) 660, 1512
EcoT22I ATGCAT 1 cut(s) 1348
EcoT38I GRGCYC 2 cut(s) 373, 675
ErhI CCWWGG 2 cut(s) 660, 1512
FaeI CATG 6 cut(s) 23, 275, 664, 729, 1354, 1505
FalI AAGNNNNNCTT 2 cut(s) 1469, 1501
FaqI GGGAC 3 cut(s) 510, 532, 558
FatI CATG 6 cut(s) 19, 271, 660, 725, 1350, 1501
FauI CCCGC 1 cut(s) 323
FauNDI CATATG 1 cut(s) 1201
Fnu4HI GCNGC 2 cut(s) 282, 1383
FokI GGATG 4 cut(s) 32, 1165, 1307, 1538
FriOI GRGCYC 2 cut(s) 373, 675
Fsp4HI GCNGC 2 cut(s) 282, 1383
FspBI CTAG 4 cut(s) 593, 647, 722, 1377
GlaI GCGC 1 cut(s) 1073
GluI GCNGC 2 cut(s) 282, 1383
GsuI CTGGAG 1 cut(s) 121
HaeIII GGCC 3 cut(s) 245, 351, 924
HapII CCGG 1 cut(s) 926
HhaI GCGC 1 cut(s) 1074
Hin1II CATG 6 cut(s) 23, 275, 664, 729, 1354, 1505
Hin6I GCGC 1 cut(s) 1072
HinP1I GCGC 1 cut(s) 1072
HincII GTYRAC 1 cut(s) 418
HindII GTYRAC 1 cut(s) 418
HindIII AAGCTT 3 cut(s) 94, 706, 839
HinfI GANTC 7 cut(s) 191, 213, 266, 714, 1009, 1049, 1229
HpaII CCGG 1 cut(s) 926
HphI GGTGA 3 cut(s) 148, 893, 941
Hpy166II GTNNAC 1 cut(s) 418
Hpy188III TCNNGA 7 cut(s) 217, 366, 647, 845, 1406, 1477, 1489
Hpy8I GTNNAC 1 cut(s) 418
Hpy99I CGWCG 1 cut(s) 1257
HpyAV CCTTC 4 cut(s) 59, 189, 1139, 1329
HpyCH4III ACNGT 3 cut(s) 760, 766, 1359
HpyCH4IV ACGT 1 cut(s) 862
HpyCH4V TGCA 7 cut(s) 23, 485, 800, 952, 993, 1346, 1445
HpyF10VI GCNNNNNNNGC 4 cut(s) 1146, 1162, 1352, 1437
HpyF3I CTNAG 7 cut(s) 58, 209, 734, 1054, 1119, 1129, 1311
HpySE526I ACGT 1 cut(s) 862
Hsp92II CATG 6 cut(s) 23, 275, 664, 729, 1354, 1505
HspAI GCGC 1 cut(s) 1072
Kzo9I GATC 4 cut(s) 388, 701, 1402, 1519
LguI GCTCTTC 1 cut(s) 663
LmnI GCTCC 3 cut(s) 86, 299, 376
Lsp1109I GCAGC 2 cut(s) 293, 1369
LweI GCATC 5 cut(s) 604, 605, 939, 1464, 1560
MaeI CTAG 4 cut(s) 593, 647, 722, 1377
MaeII ACGT 1 cut(s) 862
MaeIII GTNAC 3 cut(s) 760, 881, 1114
MalI GATC 4 cut(s) 390, 703, 1404, 1521
MboI GATC 4 cut(s) 388, 701, 1402, 1519
MboII GAAGA 7 cut(s) 186, 392, 502, 680, 860, 993, 1084
MflI RGATCY 1 cut(s) 1402
MhlI GDGCHC 3 cut(s) 339, 373, 675
MluCI AATT 8 cut(s) 223, 288, 564, 621, 642, 902, 1079, 1393
MlyI GAGTC 1 cut(s) 723
MmeI TCCRAC 2 cut(s) 986, 1303
Mph1103I ATGCAT 1 cut(s) 1348
MroXI GAANNNNTTC 5 cut(s) 150, 166, 938, 1472, 1484
MseI TTAA 2 cut(s) 633, 1506
MslI CAYNNNNRTG 3 cut(s) 552, 998, 1556
MspA1I CMGCKG 1 cut(s) 284
MspI CCGG 1 cut(s) 926
MspR9I CCNGG 3 cut(s) 926, 927, 1524
MvaI CCWGG 1 cut(s) 1524
MwoI GCNNNNNNNGC 4 cut(s) 1146, 1162, 1352, 1437
NciI CCSGG 2 cut(s) 926, 927
NcoI CCATGG 1 cut(s) 660
NdeI CATATG 1 cut(s) 1201
NdeII GATC 4 cut(s) 388, 701, 1402, 1519
NlaIII CATG 6 cut(s) 23, 275, 664, 729, 1354, 1505
NlaIV GGNNCC 4 cut(s) 571, 744, 910, 1356
NmuCI GTSAC 2 cut(s) 881, 1114
NsiI ATGCAT 1 cut(s) 1348
PciSI GCTCTTC 1 cut(s) 663
PdmI GAANNNNTTC 5 cut(s) 150, 166, 938, 1472, 1484
PfeI GAWTC 6 cut(s) 191, 213, 266, 1009, 1049, 1229
PflFI GACNNNGTC 1 cut(s) 605
PflMI CCANNNNNTGG 1 cut(s) 1282
PkrI GCNGC 2 cut(s) 283, 1384
PleI GAGTC 1 cut(s) 722
PpsI GAGTC 1 cut(s) 722
Psp124BI GAGCTC 2 cut(s) 373, 675
Psp6I CCWGG 1 cut(s) 1522
PspGI CCWGG 1 cut(s) 1522
PspN4I GGNNCC 4 cut(s) 571, 744, 910, 1356
PspPI GGNCC 3 cut(s) 66, 349, 923
PsrI GAACNNNNNNTAC 2 cut(s) 843, 875
PstNI CAGNNNCTG 2 cut(s) 1136, 1238
PsuI RGATCY 1 cut(s) 1402
PsyI GACNNNGTC 1 cut(s) 605
PvuII CAGCTG 1 cut(s) 284
RsaI GTAC 1 cut(s) 1472
RsaNI GTAC 1 cut(s) 1471
RseI CAYNNNNRTG 3 cut(s) 552, 998, 1556
SacI GAGCTC 2 cut(s) 373, 675
SapI GCTCTTC 1 cut(s) 663
SaqAI TTAA 2 cut(s) 633, 1506
SatI GCNGC 2 cut(s) 282, 1383
Sau3AI GATC 4 cut(s) 388, 701, 1402, 1519
Sau96I GGNCC 3 cut(s) 66, 349, 923
ScaI AGTACT 1 cut(s) 1472
SchI GAGTC 1 cut(s) 723
ScrFI CCNGG 3 cut(s) 926, 927, 1524
SduI GDGCHC 3 cut(s) 339, 373, 675
SfaNI GCATC 5 cut(s) 604, 605, 939, 1464, 1560
SinI GGWCC 1 cut(s) 66
SmaI CCCGGG 1 cut(s) 927
SmiMI CAYNNNNRTG 3 cut(s) 552, 998, 1556
Sse9I AATT 8 cut(s) 223, 288, 564, 621, 642, 902, 1079, 1393
SsiI CCGC 1 cut(s) 330
SspMI CTAG 4 cut(s) 593, 647, 722, 1377
SstI GAGCTC 2 cut(s) 373, 675
StyD4I CCNGG 3 cut(s) 924, 925, 1522
StyI CCWWGG 2 cut(s) 660, 1512
TaaI ACNGT 3 cut(s) 760, 766, 1359
TaiI ACGT 1 cut(s) 865
TaqI TCGA 4 cut(s) 218, 411, 1040, 1252
TasI AATT 8 cut(s) 223, 288, 564, 621, 642, 902, 1079, 1393
TatI WGTACW 1 cut(s) 1470
TfiI GAWTC 6 cut(s) 191, 213, 266, 1009, 1049, 1229
Tru1I TTAA 2 cut(s) 633, 1506
Tru9I TTAA 2 cut(s) 633, 1506
TscAI CASTG 3 cut(s) 189, 559, 1563
TseFI GTSAC 2 cut(s) 881, 1114
TseI GCWGC 2 cut(s) 281, 1382
Tsp45I GTSAC 2 cut(s) 881, 1114
TspDTI ATGAA 9 cut(s) 17, 34, 159, 279, 367, 847, 1284, 1490, 1554
TspMI CCCGGG 1 cut(s) 925
TspRI CASTG 3 cut(s) 189, 559, 1563
Tth111I GACNNNGTC 1 cut(s) 605
Van91I CCANNNNNTGG 1 cut(s) 1282
VpaK11BI GGWCC 1 cut(s) 66
XapI RAATTY 2 cut(s) 642, 902
XbaI TCTAGA 1 cut(s) 646
XmaI CCCGGG 1 cut(s) 925
XmnI GAANNNNTTC 5 cut(s) 150, 166, 938, 1472, 1484
XspI CTAG 4 cut(s) 593, 647, 722, 1377
ZrmI AGTACT 1 cut(s) 1472
Zsp2I ATGCAT 1 cut(s) 1348
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.