AT5G44410

Belongs to the oxygen-dependent FAD-linked oxidoreductase family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Reverse (-)
17891132 .. 17893067
1936 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G44410.1

Sequence Viewer

Length: 1608 bp
ATGGAGATTTTGAGATTTTTGCTTTCTCTCTTTATATATTTTCTTTTGTTGAATCTTTCTCTTTCACATTTTCCTTCGATTTCAGCTCAAAGGACTAACCATGAAAACTTCCTCAAGTGTCTCTCTCACCGAATCAACGAGGACGACTCAAGAATCATACACACATCAAAAGATCCTTCGTATTTCTCAATCTTGAATTCTTCCATACAAAATCCAAGATTCTTTGTTCTCGAAACACCTAAACCGGTTTCAATCATCACTCCGGTTCAAGCCACCGATGTTCAATCTACGATTAAATGCGCACGGCTTCACGGTATACACATCAGGACTAGGAGTGGTGGTCATGACTACGAAGGTTTATCTTACATGGCTAAAAGCAGACCGTTCGTTGTCATTGATTTGAGAAATCTCCGGTCTATTACATTAGATGTTGATAACCGGACCGGTTGGGTTCAATCCGGAGCTACAATTGGGGAATTGTACTATGAGATTGGAAAATTAAGCAAATCTTTGGCCTTTCCGGCCGGTCTTTATCCAACCGTTGGCATCGGAGGGCAATTCGGAGGTGGTGGGTACGGTACGTTGATGAGAAAATACGGTTTATCGGCGGACAATGTAATTGATGCACATATTGTTGACGCGAATGGAAGCTTTCTTGACCGACAAGGCATGGGTGAAGATTTCTTTTGGGCTATCCGTGGAGGCGGAGGATCAAGCTTCTCTGTTGTCCTGTCATGGAAGATTAGATTGCTTGATGTTCCGTCGGTAGTAACGGTCTTTAAAGTCGTGAAAACATCGGAAAAAGAGGCTGTCTCGATCATCAACAAGTGGCAGTATATTGCGGATAAGGTTCCTAATGATCTTTTCATCAGAGCTATGCTACAGAAGGAAACCGAGGTTTATGCTTCGTTCCCGGGACTTTATCTCGGTCCGGTAAGCGATCTATTAGCATTGATGAAAGATAAGTTTCCGGAATTAGGTCTTGAGATTGGAAATTGTAGAGAAATGAGTTGGATTGAGTCTGTTCTCTGGTTTATAAAAGGAGAATCAATGGAAATTCTTGCGAAACGGAAACGAACGTCAAGATCTTTCAAGGGAAAAGATGATTTCATCGAAGAACCGATACCTAAAACCGCGATTCAGTATCTTTGGAGACGATTCGAGGCGCCCGAGGCTCGGCTTGCAAAGATCATACTCACTCCATTTGGTGGCAAAATGAGTGAAATTGCGGATAACGAAATACCATTCCCACATAGAGAAGGTAATCTTTATGAGATTCAATATTTAGCTTATTGGAGTGAAGAAGAAGATAAGAACAAGACTAATACTGAAAAGTATTTGAGATGGGTCGAGAGTGTATACGAATTTATGACTCCTTATGTTTCAAAATCTCCACGAAGAGCTTATGTTAATTTTAGAGACATTGATTTGGGAATGTATCTTGGGTTGAATATGAAGACAAAGTACGAGGAAGCAAAGGTTTGGGGAGTGAAGTATTTCAAGAACAATTTCGATAGATTGGTGAGAGTTAAAACAAATGTTGATCCAATGGATTTCTTCTGTGATGAACAAAGTATACCAATTATGAAATATGTTAATGATATTTGA

Protein Analysis

535

Amino Acids

61.27

Weight (kDa)

8.36

Isoelectric Point (pI)

42.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAD_binding_4 PF01565 85 - 219 7.3e-23 FAD binding domain
BBE PF08031 468 - 527 5e-18 Berberine and berberine like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1037
Acc16I TGCGCA 1 cut(s) 301
AccB1I GGYRCC 1 cut(s) 1165
AccB7I CCANNNNNTGG 2 cut(s) 542, 1208
AccI GTMKAC 3 cut(s) 316, 1359, 1576
AccII CGCG 2 cut(s) 641, 1136
AccIII TCCGGA 2 cut(s) 458, 970
AciI CCGC 5 cut(s) 608, 705, 842, 1134, 1229
AclWI GGATC 3 cut(s) 167, 718, 1538
AcoI YGGCCR 1 cut(s) 522
AcsI RAATTY 3 cut(s) 196, 1056, 1364
AcyI GRCGYC 1 cut(s) 1166
AfaI GTAC 4 cut(s) 482, 575, 580, 1466
AfiI CCNNNNNNNGG 4 cut(s) 542, 977, 1176, 1208
AgeI ACCGGT 2 cut(s) 244, 443
AluBI AGCT 7 cut(s) 86, 464, 651, 717, 875, 1289, 1403
AluI AGCT 7 cut(s) 86, 464, 651, 717, 875, 1289, 1403
Alw26I GTCTC 4 cut(s) 125, 817, 1147, 1413
AlwI GGATC 3 cut(s) 167, 718, 1538
Ama87I CYCGRG 2 cut(s) 913, 1169
Aor13HI TCCGGA 2 cut(s) 458, 970
AoxI GGCC 2 cut(s) 513, 522
ApoI RAATTY 3 cut(s) 196, 1056, 1364
AsiGI ACCGGT 2 cut(s) 244, 443
Asp700I GAANNNNTTC 2 cut(s) 1496, 1508
AspLEI GCGC 2 cut(s) 302, 1168
AspS9I GGNCC 2 cut(s) 441, 929
AsuC2I CCSGG 2 cut(s) 914, 915
AsuHPI GGTGA 3 cut(s) 119, 686, 1534
AvaI CYCGRG 2 cut(s) 913, 1169
AvaII GGWCC 2 cut(s) 441, 929
BanI GGYRCC 1 cut(s) 1165
BarI GAAGNNNNNNTAC 4 cut(s) 1107, 1139, 1448, 1480
BbsI GAAGAC 1 cut(s) 1463
BccI CCATC 1 cut(s) 1338
BceAI ACGGC 1 cut(s) 320
BcgI CGANNNNNNTGC 4 cut(s) 367, 401, 884, 918
BcnI CCSGG 2 cut(s) 914, 915
BcoDI GTCTC 4 cut(s) 125, 817, 1147, 1413
BfaI CTAG 1 cut(s) 330
BfmI CTRYAG 1 cut(s) 881
BfoI RGCGCY 1 cut(s) 1169
BglI GCCNNNNNGGC 1 cut(s) 521
BglII AGATCT 1 cut(s) 1085
Bme1390I CCNGG 2 cut(s) 914, 915
Bme18I GGWCC 2 cut(s) 441, 929
BmeT110I CYCGRG 2 cut(s) 913, 1169
BmgT120I GGNCC 2 cut(s) 441, 929
BmiI GGNNCC 2 cut(s) 852, 1167
BmrFI CCNGG 2 cut(s) 914, 915
BmsI GCATC 2 cut(s) 555, 613
BpiI GAAGAC 1 cut(s) 1463
BplI GAGNNNNNCTC 4 cut(s) 131, 163, 797, 829
BpuEI CTTGAG 3 cut(s) 98, 133, 1004
BpuMI CCSGG 2 cut(s) 914, 915
BsaHI GRCGYC 1 cut(s) 1166
BsaJI CCNNGG 4 cut(s) 697, 894, 913, 1170
BsaWI WCCGGW 8 cut(s) 244, 262, 411, 438, 443, 458, 931, 970
BsaXI ACNNNNNCTCC 2 cut(s) 325, 355
Bsc4I CCNNNNNNNGG 4 cut(s) 542, 977, 1176, 1208
Bse118I RCCGGY 3 cut(s) 244, 443, 524
BseAI TCCGGA 2 cut(s) 458, 970
BseDI CCNNGG 4 cut(s) 697, 894, 913, 1170
BseLI CCNNNNNNNGG 4 cut(s) 542, 977, 1176, 1208
BseX3I CGGCCG 1 cut(s) 522
Bsh1236I CGCG 2 cut(s) 641, 1136
Bsh1285I CGRYCG 1 cut(s) 525
BshFI GGCC 2 cut(s) 515, 524
BshNI GGYRCC 1 cut(s) 1165
BshTI ACCGGT 2 cut(s) 244, 443
BsiEI CGRYCG 1 cut(s) 525
BsiHKCI CYCGRG 2 cut(s) 913, 1169
BslFI GGGAC 1 cut(s) 930
BslI CCNNNNNNNGG 4 cut(s) 542, 977, 1176, 1208
BsmAI GTCTC 4 cut(s) 125, 817, 1147, 1413
BsmBI CGTCTC 1 cut(s) 1147
BsmFI GGGAC 1 cut(s) 930
BsnI GGCC 2 cut(s) 515, 524
BsoBI CYCGRG 2 cut(s) 913, 1169
Bsp13I TCCGGA 2 cut(s) 458, 970
Bsp143I GATC 8 cut(s) 172, 710, 816, 859, 940, 1085, 1188, 1543
BspACI CCGC 5 cut(s) 608, 705, 842, 1134, 1229
BspANI GGCC 2 cut(s) 515, 524
BspEI TCCGGA 2 cut(s) 458, 970
BspFNI CGCG 2 cut(s) 641, 1136
BspHI TCATGA 1 cut(s) 343
BspLI GGNNCC 2 cut(s) 852, 1167
BspPI GGATC 3 cut(s) 167, 718, 1538
BspQI GCTCTTC 1 cut(s) 1393
BspT107I GGYRCC 1 cut(s) 1165
BsrFI RCCGGY 3 cut(s) 244, 443, 524
BssAI RCCGGY 3 cut(s) 244, 443, 524
BssECI CCNNGG 4 cut(s) 697, 894, 913, 1170
BssMI GATC 8 cut(s) 172, 710, 816, 859, 940, 1085, 1188, 1543
BssNAI GTATAC 3 cut(s) 317, 1360, 1577
BssNI GRCGYC 1 cut(s) 1166
Bst1107I GTATAC 3 cut(s) 317, 1360, 1577
Bst4CI ACNGT 6 cut(s) 314, 384, 541, 578, 599, 775
Bst6I CTCTTC 1 cut(s) 1393
BstACI GRCGYC 1 cut(s) 1166
BstC8I GCNNGC 1 cut(s) 1182
BstDSI CCRYGG 1 cut(s) 697
BstFNI CGCG 2 cut(s) 641, 1136
BstH2I RGCGCY 1 cut(s) 1169
BstHHI GCGC 2 cut(s) 302, 1168
BstKTI GATC 8 cut(s) 175, 713, 819, 862, 943, 1088, 1191, 1546
BstMAI GTCTC 4 cut(s) 125, 817, 1147, 1413
BstMBI GATC 8 cut(s) 172, 710, 816, 859, 940, 1085, 1188, 1543
BstMCI CGRYCG 1 cut(s) 525
BstMWI GCNNNNNNNGC 3 cut(s) 521, 1172, 1181
BstSCI CCNGG 2 cut(s) 912, 913
BstSFI CTRYAG 1 cut(s) 881
BstUI CGCG 2 cut(s) 641, 1136
BstV2I GAAGAC 1 cut(s) 1463
BstX2I RGATCY 2 cut(s) 172, 1085
BstYI RGATCY 2 cut(s) 172, 1085
BstZ17I GTATAC 3 cut(s) 317, 1360, 1577
BstZI CGGCCG 1 cut(s) 522
BsuRI GGCC 2 cut(s) 515, 524
BtgI CCRYGG 1 cut(s) 697
Cac8I GCNNGC 1 cut(s) 1182
CciI TCATGA 1 cut(s) 343
CfoI GCGC 2 cut(s) 302, 1168
Cfr10I RCCGGY 3 cut(s) 244, 443, 524
Cfr13I GGNCC 2 cut(s) 441, 929
Cfr9I CCCGGG 1 cut(s) 913
CpoI CGGWCCG 2 cut(s) 441, 929
CseI GACGC 1 cut(s) 647
Csp6I GTAC 4 cut(s) 481, 574, 579, 1465
CspAI ACCGGT 2 cut(s) 244, 443
CspI CGGWCCG 2 cut(s) 441, 929
CviAII CATG 5 cut(s) 101, 344, 367, 670, 735
CviQI GTAC 4 cut(s) 481, 574, 579, 1465
DinI GGCGCC 1 cut(s) 1167
DpnI GATC 8 cut(s) 174, 712, 818, 861, 942, 1087, 1190, 1545
DpnII GATC 8 cut(s) 172, 710, 816, 859, 940, 1085, 1188, 1543
DraI TTTAAA 1 cut(s) 781
EaeI YGGCCR 1 cut(s) 522
EagI CGGCCG 1 cut(s) 522
Eam1104I CTCTTC 1 cut(s) 1393
EarI CTCTTC 1 cut(s) 1393
EciI GGCGGA 2 cut(s) 623, 720
EclXI CGGCCG 1 cut(s) 522
Eco47I GGWCC 2 cut(s) 441, 929
Eco52I CGGCCG 1 cut(s) 522
Eco88I CYCGRG 2 cut(s) 913, 1169
EcoRI GAATTC 1 cut(s) 196
EgeI GGCGCC 1 cut(s) 1167
EheI GGCGCC 1 cut(s) 1167
Esp3I CGTCTC 1 cut(s) 1147
FaeI CATG 5 cut(s) 104, 347, 370, 673, 738
FalI AAGNNNNNCTT 4 cut(s) 493, 525, 1251, 1283
FaqI GGGAC 1 cut(s) 930
FatI CATG 5 cut(s) 100, 343, 366, 669, 734
FblI GTMKAC 3 cut(s) 316, 1359, 1576
FspAI RTGCGCAY 1 cut(s) 301
FspBI CTAG 1 cut(s) 330
FspI TGCGCA 1 cut(s) 301
GlaI GCGC 2 cut(s) 301, 1167
HaeII RGCGCY 1 cut(s) 1169
HaeIII GGCC 2 cut(s) 515, 524
HgaI GACGC 1 cut(s) 647
HhaI GCGC 2 cut(s) 302, 1168
Hin1I GRCGYC 1 cut(s) 1166
Hin1II CATG 5 cut(s) 104, 347, 370, 673, 738
Hin6I GCGC 2 cut(s) 300, 1166
HinP1I GCGC 2 cut(s) 300, 1166
HincII GTYRAC 1 cut(s) 637
HindII GTYRAC 1 cut(s) 637
HindIII AAGCTT 2 cut(s) 649, 715
HphI GGTGA 3 cut(s) 119, 686, 1534
Hpy166II GTNNAC 4 cut(s) 317, 637, 1360, 1577
Hpy188I TCNGA 4 cut(s) 551, 563, 799, 872
Hpy8I GTNNAC 4 cut(s) 317, 637, 1360, 1577
Hpy99I CGWCG 1 cut(s) 766
HpyAV CCTTC 5 cut(s) 84, 186, 347, 880, 1253
HpyCH4III ACNGT 6 cut(s) 314, 384, 541, 578, 599, 775
HpyCH4IV ACGT 2 cut(s) 581, 1079
HpyCH4V TGCA 2 cut(s) 626, 1184
HpyF10VI GCNNNNNNNGC 3 cut(s) 521, 1172, 1181
HpySE526I ACGT 2 cut(s) 581, 1079
Hsp92I GRCGYC 1 cut(s) 1166
Hsp92II CATG 5 cut(s) 104, 347, 370, 673, 738
HspAI GCGC 2 cut(s) 300, 1166
KasI GGCGCC 1 cut(s) 1165
Kpn2I TCCGGA 2 cut(s) 458, 970
Kzo9I GATC 8 cut(s) 172, 710, 816, 859, 940, 1085, 1188, 1543
LguI GCTCTTC 1 cut(s) 1393
LmnI GCTCC 1 cut(s) 461
LweI GCATC 2 cut(s) 555, 613
MaeI CTAG 1 cut(s) 330
MaeII ACGT 2 cut(s) 581, 1079
MaeIII GTNAC 1 cut(s) 769
MalI GATC 8 cut(s) 174, 712, 818, 861, 942, 1087, 1190, 1545
MboI GATC 8 cut(s) 172, 710, 816, 859, 940, 1085, 1188, 1543
MfeI CAATTG 1 cut(s) 468
MflI RGATCY 2 cut(s) 172, 1085
Mly113I GGCGCC 1 cut(s) 1166
MlyI GAGTC 3 cut(s) 140, 1028, 1366
MmeI TCCRAC 2 cut(s) 560, 992
MroI TCCGGA 2 cut(s) 458, 970
MroXI GAANNNNTTC 2 cut(s) 1496, 1508
MseI TTAA 6 cut(s) 294, 500, 780, 1410, 1530, 1596
MspR9I CCNGG 2 cut(s) 914, 915
MunI CAATTG 1 cut(s) 468
MvnI CGCG 2 cut(s) 641, 1136
MwoI GCNNNNNNNGC 3 cut(s) 521, 1172, 1181
NarI GGCGCC 1 cut(s) 1166
NciI CCSGG 2 cut(s) 914, 915
NdeII GATC 8 cut(s) 172, 710, 816, 859, 940, 1085, 1188, 1543
NlaIII CATG 5 cut(s) 104, 347, 370, 673, 738
NlaIV GGNNCC 2 cut(s) 852, 1167
NmeAIII GCCGAG 1 cut(s) 1156
NsbI TGCGCA 1 cut(s) 301
PagI TCATGA 1 cut(s) 343
PciSI GCTCTTC 1 cut(s) 1393
PcsI WCGNNNNNNNCGW 1 cut(s) 1167
PdmI GAANNNNTTC 2 cut(s) 1496, 1508
PfeI GAWTC 8 cut(s) 52, 132, 153, 219, 1046, 1138, 1158, 1276
PflMI CCANNNNNTGG 2 cut(s) 542, 1208
PinAI ACCGGT 2 cut(s) 244, 443
PleI GAGTC 3 cut(s) 140, 1027, 1366
PluTI GGCGCC 1 cut(s) 1169
PpsI GAGTC 3 cut(s) 140, 1027, 1366
PsiI TTATAA 1 cut(s) 1037
PspN4I GGNNCC 2 cut(s) 852, 1167
PspPI GGNCC 2 cut(s) 441, 929
PsrI GAACNNNNNNTAC 2 cut(s) 1560, 1592
PsuI RGATCY 2 cut(s) 172, 1085
RsaI GTAC 4 cut(s) 482, 575, 580, 1466
RsaNI GTAC 4 cut(s) 481, 574, 579, 1465
Rsr2I CGGWCCG 2 cut(s) 441, 929
RsrII CGGWCCG 2 cut(s) 441, 929
SapI GCTCTTC 1 cut(s) 1393
SaqAI TTAA 6 cut(s) 294, 500, 780, 1410, 1530, 1596
Sau3AI GATC 8 cut(s) 172, 710, 816, 859, 940, 1085, 1188, 1543
Sau96I GGNCC 2 cut(s) 441, 929
SchI GAGTC 3 cut(s) 140, 1028, 1366
ScrFI CCNGG 2 cut(s) 914, 915
SfaNI GCATC 2 cut(s) 555, 613
SfcI CTRYAG 1 cut(s) 881
SfiI GGCCNNNNNGGCC 1 cut(s) 521
SfoI GGCGCC 1 cut(s) 1167
SinI GGWCC 2 cut(s) 441, 929
SmaI CCCGGG 1 cut(s) 915
SmlI CTYRAG 3 cut(s) 113, 148, 983
SmoI CTYRAG 3 cut(s) 113, 148, 983
SsiI CCGC 5 cut(s) 608, 705, 842, 1134, 1229
SspDI GGCGCC 1 cut(s) 1165
SspI AATATT 1 cut(s) 1283
SspMI CTAG 1 cut(s) 330
StyD4I CCNGG 2 cut(s) 912, 913
TaaI ACNGT 6 cut(s) 314, 384, 541, 578, 599, 775
TaiI ACGT 2 cut(s) 584, 1082
TaqI TCGA 7 cut(s) 77, 231, 815, 1113, 1161, 1350, 1512
TaqII GACCGA 2 cut(s) 675, 917
TatI WGTACW 1 cut(s) 480
TfiI GAWTC 8 cut(s) 52, 132, 153, 219, 1046, 1138, 1158, 1276
Tru1I TTAA 6 cut(s) 294, 500, 780, 1410, 1530, 1596
Tru9I TTAA 6 cut(s) 294, 500, 780, 1410, 1530, 1596
TspDTI ATGAA 7 cut(s) 117, 856, 971, 1099, 1469, 1581, 1601
TspGWI ACGGA 3 cut(s) 686, 750, 1084
TspMI CCCGGG 1 cut(s) 913
Van91I CCANNNNNTGG 2 cut(s) 542, 1208
VpaK11BI GGWCC 2 cut(s) 441, 929
XapI RAATTY 3 cut(s) 196, 1056, 1364
XmaI CCCGGG 1 cut(s) 913
XmiI GTMKAC 3 cut(s) 316, 1359, 1576
XmnI GAANNNNTTC 2 cut(s) 1496, 1508
XspI CTAG 1 cut(s) 330
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.