Prupe.4G096900_v2.0.a1

Belongs to the oxygen-dependent FAD-linked oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0000925
Physical Location & Seq
Reverse (-)
4867442 .. 4868896
1455 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G096900.1

Sequence Viewer

Length: 1185 bp
ATGAAAATGGTGACCTTGCACATGAGACTACTTCCTCTACTTTTCATCCTTTTCAACTCAGTTTGCGGGGGCCACGACTATGAGGGCCTATCTTATGTATCTGAAACTCCTTTCATCATCATTGATCTTTTCAATCTTCGATCCATCGATATTGACATTGAGAATGAGAGTTCTTGGGTCGAGTCAGGTGCTACTATCGGAGAGTTTTATTACGCAATTGCACAAAAGAGTAAAGTCTGTGGATTTCCAGGAGGGATTTGTCACACAGTTGGTGTTGGGGGACATATTAGCGGAGGTGGATTTGGTACGTTGTTCAGGAAGTATGGTCTGGCAGCTGACAATGTCCTTGATGCTAAGATTGTTGACGTTAATGGGAGAGTTCTTGACAGAAAATCCATGGGAGAAGACCTCTTTTGGGCTATTAGAGGAGGGGGAGGCTCAAGCTTTGGAGTCATTCTGACATGGAAACTTAGGTTGGTTCGTGTTCCTCCATCTGTAACAGTTTACAGGGAATCAAAGACCATAGAACAAGGTGCAACCAAATTTGTATCTAAATGGCAAGTTGTCGCAGATAGAATTCCTGAAGAGCACTTCCTGCGTTTACTTGTACAAGTTGCAAATGGAGCTGGTAAAAATGATGGAAAAACTATTACAGTTATATTTGATTTCTTGTTTCTTGAGACATTTGAGAAATTTCTCCCTTGGATGCAAGACAATTTCCCAGACTTATGTTTAGACCAGAGCAAATTCACGGAAATGAGTTGGATTGAGTCTGTTCTATACTTTGAAGGCCTCCCAAGTAACGAAGTAGACGTCTTGCTTCAGCGGACTGAACCATCTAAGAGATTCTTCAAAGCAACATCAGATTATGTGACAGAACCAATTTCAGAAGCTGGCTTGGAAGATTTATGGCAAAGAATGCTTCAACTGGAGGCATCCGAGTTGATACTGACACCTTATGGTGGAAGAATGAGTGAGATTTCTGCTTCAGAAACTCCTTTCCCACATAGAAAAGGAAATTTATTTGAAATCCAGTATTTGGTCTTTTGGAATGATGACAAGGAAACTGAAAAGAATATTGGTTGGTTAAGAAGGCTGTATGCCTCCATGGCACCATATGTTTCAAAGTCCCCAAGAGCTGCCTATTTGAACTATAGGGATCTGGACTTGGGAAGGAACTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
BBE FAD_binding_4

Protein Analysis

395

Amino Acids

44.64

Weight (kDa)

5.35

Isoelectric Point (pI)

45.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 816
AccB1I GGYRCC 1 cut(s) 1111
AccB7I CCANNNNNTGG 1 cut(s) 1039
AccI GTMKAC 1 cut(s) 810
AciI CCGC 3 cut(s) 66, 291, 826
AclWI GGATC 2 cut(s) 135, 1167
AcsI RAATTY 5 cut(s) 542, 576, 692, 746, 1018
AcuI CTGAAG 3 cut(s) 603, 806, 972
AcyI GRCGYC 1 cut(s) 813
AfaI GTAC 2 cut(s) 307, 609
AfiI CCNNNNNNNGG 3 cut(s) 415, 962, 1039
AgsI TTSAA 8 cut(s) 55, 133, 788, 853, 926, 1028, 1125, 1150
AjnI CCWGG 1 cut(s) 247
AjuI GAANNNNNNNTTGG 4 cut(s) 458, 490, 1062, 1094
AluBI AGCT 5 cut(s) 335, 444, 626, 893, 1139
AluI AGCT 5 cut(s) 335, 444, 626, 893, 1139
Alw21I GWGCWC 1 cut(s) 591
Alw26I GTCTC 2 cut(s) 19, 674
AlwI GGATC 2 cut(s) 135, 1167
AlwNI CAGNNNCTG 1 cut(s) 893
AoxI GGCC 3 cut(s) 70, 85, 790
ApeKI GCWGC 2 cut(s) 332, 1139
ApoI RAATTY 5 cut(s) 542, 576, 692, 746, 1018
ArsI GACNNNNNNTTYG 2 cut(s) 798, 830
AspS9I GGNCC 2 cut(s) 70, 85
AsuHPI GGTGA 1 cut(s) 22
BanI GGYRCC 1 cut(s) 1111
BbsI GAAGAC 1 cut(s) 411
Bbv12I GWGCWC 1 cut(s) 591
BbvI GCAGC 2 cut(s) 344, 1126
BccI CCATC 4 cut(s) 152, 499, 632, 844
BcgI CGANNNNNNTGC 2 cut(s) 170, 204
BciT130I CCWGG 1 cut(s) 249
BcoDI GTCTC 2 cut(s) 19, 674
BfmI CTRYAG 1 cut(s) 1153
BglI GCCNNNNNGGC 1 cut(s) 1109
BisI GCNGC 2 cut(s) 333, 1140
BlsI GCNGC 2 cut(s) 334, 1141
Bme1390I CCNGG 1 cut(s) 249
BmgT120I GGNCC 2 cut(s) 70, 85
BmiI GGNNCC 2 cut(s) 71, 1113
BmrFI CCNGG 1 cut(s) 249
BmsI GCATC 3 cut(s) 340, 696, 944
BpiI GAAGAC 1 cut(s) 411
BplI GAGNNNNNCTC 2 cut(s) 393, 425
BpmI CTGGAG 1 cut(s) 950
BpuEI CTTGAG 2 cut(s) 424, 698
Bsa29I ATCGAT 1 cut(s) 147
BsaHI GRCGYC 1 cut(s) 813
BsaJI CCNNGG 3 cut(s) 396, 701, 1107
Bsc4I CCNNNNNNNGG 3 cut(s) 415, 962, 1039
Bse1I ACTGG 2 cut(s) 933, 1033
BseBI CCWGG 1 cut(s) 249
BseCI ATCGAT 1 cut(s) 147
BseDI CCNNGG 3 cut(s) 396, 701, 1107
BseGI GGATG 3 cut(s) 45, 711, 935
BseLI CCNNNNNNNGG 3 cut(s) 415, 962, 1039
BseMII CTCAG 1 cut(s) 72
BseNI ACTGG 2 cut(s) 933, 1033
BseRI GAGGAG 1 cut(s) 441
BseXI GCAGC 2 cut(s) 344, 1126
BshFI GGCC 3 cut(s) 72, 87, 792
BshNI GGYRCC 1 cut(s) 1111
BshVI ATCGAT 1 cut(s) 147
BsiHKAI GWGCWC 1 cut(s) 591
BslFI GGGAC 2 cut(s) 294, 1114
BslI CCNNNNNNNGG 3 cut(s) 415, 962, 1039
BsmAI GTCTC 2 cut(s) 19, 674
BsmFI GGGAC 2 cut(s) 294, 1114
BsmI GAATGC 1 cut(s) 924
BsnI GGCC 3 cut(s) 72, 87, 792
Bsp1286I GDGCHC 1 cut(s) 591
Bsp1407I TGTACA 1 cut(s) 607
Bsp143I GATC 3 cut(s) 124, 140, 1159
Bsp19I CCATGG 2 cut(s) 396, 1107
BspACI CCGC 3 cut(s) 66, 291, 826
BspANI GGCC 3 cut(s) 72, 87, 792
BspCNI CTCAG 1 cut(s) 71
BspDI ATCGAT 1 cut(s) 147
BspLI GGNNCC 2 cut(s) 71, 1113
BspPI GGATC 2 cut(s) 135, 1167
BspQI GCTCTTC 1 cut(s) 579
BspT107I GGYRCC 1 cut(s) 1111
BsrGI TGTACA 1 cut(s) 607
BsrI ACTGG 2 cut(s) 933, 1033
BssECI CCNNGG 3 cut(s) 396, 701, 1107
BssMI GATC 3 cut(s) 124, 140, 1159
BssNI GRCGYC 1 cut(s) 813
BssT1I CCWWGG 3 cut(s) 396, 701, 1107
Bst2UI CCWGG 1 cut(s) 249
Bst4CI ACNGT 3 cut(s) 268, 502, 655
Bst6I CTCTTC 1 cut(s) 579
BstACI GRCGYC 1 cut(s) 813
BstAPI GCANNNNNTGC 2 cut(s) 595, 919
BstAUI TGTACA 1 cut(s) 607
BstC8I GCNNGC 1 cut(s) 895
BstDEI CTNAG 4 cut(s) 58, 354, 470, 840
BstDSI CCRYGG 2 cut(s) 396, 1107
BstEII GGTNACC 1 cut(s) 10
BstF5I GGATG 3 cut(s) 45, 711, 935
BstKTI GATC 3 cut(s) 127, 143, 1162
BstMAI GTCTC 2 cut(s) 19, 674
BstMBI GATC 3 cut(s) 124, 140, 1159
BstMWI GCNNNNNNNGC 4 cut(s) 595, 623, 919, 1109
BstNI CCWGG 1 cut(s) 249
BstPI GGTNACC 1 cut(s) 10
BstSCI CCNGG 1 cut(s) 247
BstSFI CTRYAG 1 cut(s) 1153
BstV1I GCAGC 2 cut(s) 344, 1126
BstV2I GAAGAC 1 cut(s) 411
BstX2I RGATCY 1 cut(s) 1159
BstYI RGATCY 1 cut(s) 1159
Bsu15I ATCGAT 1 cut(s) 147
BsuRI GGCC 3 cut(s) 72, 87, 792
BsuTUI ATCGAT 1 cut(s) 147
BtgI CCRYGG 2 cut(s) 396, 1107
BtsCI GGATG 3 cut(s) 45, 711, 935
Cac8I GCNNGC 1 cut(s) 895
CaiI CAGNNNCTG 1 cut(s) 893
Cfr13I GGNCC 2 cut(s) 70, 85
ClaI ATCGAT 1 cut(s) 147
Csp6I GTAC 2 cut(s) 306, 608
CviAII CATG 4 cut(s) 22, 397, 462, 1108
CviQI GTAC 2 cut(s) 306, 608
DdeI CTNAG 4 cut(s) 58, 354, 470, 840
DpnI GATC 3 cut(s) 126, 142, 1161
DpnII GATC 3 cut(s) 124, 140, 1159
Eam1104I CTCTTC 1 cut(s) 579
EarI CTCTTC 1 cut(s) 579
Eco130I CCWWGG 3 cut(s) 396, 701, 1107
Eco147I AGGCCT 1 cut(s) 792
Eco57I CTGAAG 3 cut(s) 603, 806, 972
Eco91I GGTNACC 1 cut(s) 10
EcoO109I RGGNCCY 1 cut(s) 85
EcoO65I GGTNACC 1 cut(s) 10
EcoRI GAATTC 1 cut(s) 576
EcoRII CCWGG 1 cut(s) 247
EcoT14I CCWWGG 3 cut(s) 396, 701, 1107
ErhI CCWWGG 3 cut(s) 396, 701, 1107
FaeI CATG 4 cut(s) 25, 400, 465, 1111
FalI AAGNNNNNCTT 2 cut(s) 833, 865
FaqI GGGAC 2 cut(s) 294, 1114
FatI CATG 4 cut(s) 21, 396, 461, 1107
FauI CCCGC 1 cut(s) 59
FauNDI CATATG 1 cut(s) 1117
FblI GTMKAC 1 cut(s) 810
Fnu4HI GCNGC 2 cut(s) 333, 1140
FokI GGATG 3 cut(s) 32, 718, 922
Fsp4HI GCNGC 2 cut(s) 333, 1140
GluI GCNGC 2 cut(s) 333, 1140
GsuI CTGGAG 1 cut(s) 950
HaeIII GGCC 3 cut(s) 72, 87, 792
Hin1I GRCGYC 1 cut(s) 813
Hin1II CATG 4 cut(s) 25, 400, 465, 1111
HincII GTYRAC 1 cut(s) 364
HindII GTYRAC 1 cut(s) 364
HindIII AAGCTT 1 cut(s) 442
HinfI GANTC 5 cut(s) 182, 450, 512, 770, 846
HphI GGTGA 1 cut(s) 22
Hpy166II GTNNAC 4 cut(s) 364, 505, 602, 811
Hpy188I TCNGA 7 cut(s) 103, 200, 459, 865, 889, 940, 991
Hpy188III TCNNGA 5 cut(s) 316, 383, 581, 677, 1163
Hpy8I GTNNAC 4 cut(s) 364, 505, 602, 811
HpyAV CCTTC 3 cut(s) 782, 1086, 1167
HpyCH4III ACNGT 3 cut(s) 268, 502, 655
HpyCH4IV ACGT 3 cut(s) 308, 366, 813
HpyCH4V TGCA 5 cut(s) 19, 221, 536, 617, 709
HpyF10VI GCNNNNNNNGC 4 cut(s) 595, 623, 919, 1109
HpyF3I CTNAG 4 cut(s) 58, 354, 470, 840
HpySE526I ACGT 3 cut(s) 308, 366, 813
Hsp92I GRCGYC 1 cut(s) 813
Hsp92II CATG 4 cut(s) 25, 400, 465, 1111
Kzo9I GATC 3 cut(s) 124, 140, 1159
LguI GCTCTTC 1 cut(s) 579
LmnI GCTCC 1 cut(s) 623
Lsp1109I GCAGC 2 cut(s) 344, 1126
LweI GCATC 3 cut(s) 340, 696, 944
MaeII ACGT 3 cut(s) 308, 366, 813
MaeIII GTNAC 5 cut(s) 10, 260, 496, 800, 871
MalI GATC 3 cut(s) 126, 142, 1161
MboI GATC 3 cut(s) 124, 140, 1159
MboII GAAGA 6 cut(s) 128, 416, 596, 841, 914, 978
MfeI CAATTG 1 cut(s) 216
MflI RGATCY 1 cut(s) 1159
MhlI GDGCHC 1 cut(s) 591
MluCI AATT 8 cut(s) 216, 542, 576, 692, 715, 746, 882, 1018
MlyI GAGTC 3 cut(s) 191, 459, 779
MmeI TCCRAC 1 cut(s) 743
MseI TTAA 2 cut(s) 369, 1088
MslI CAYNNNNRTG 2 cut(s) 78, 755
MspA1I CMGCKG 2 cut(s) 335, 826
MspR9I CCNGG 1 cut(s) 249
MunI CAATTG 1 cut(s) 216
Mva1269I GAATGC 1 cut(s) 924
MvaI CCWGG 1 cut(s) 249
MwoI GCNNNNNNNGC 4 cut(s) 595, 623, 919, 1109
NcoI CCATGG 2 cut(s) 396, 1107
NdeI CATATG 1 cut(s) 1117
NdeII GATC 3 cut(s) 124, 140, 1159
NlaIII CATG 4 cut(s) 25, 400, 465, 1111
NlaIV GGNNCC 2 cut(s) 71, 1113
NmuCI GTSAC 3 cut(s) 10, 260, 871
PceI AGGCCT 1 cut(s) 792
PciSI GCTCTTC 1 cut(s) 579
PcsI WCGNNNNNNNCGW 1 cut(s) 810
PctI GAATGC 1 cut(s) 924
PfeI GAWTC 2 cut(s) 512, 846
PflFI GACNNNGTC 1 cut(s) 341
PflMI CCANNNNNTGG 1 cut(s) 1039
PfoI TCCNGGA 1 cut(s) 247
PkrI GCNGC 2 cut(s) 334, 1141
PleI GAGTC 3 cut(s) 190, 458, 778
PpsI GAGTC 3 cut(s) 190, 458, 778
Psp6I CCWGG 1 cut(s) 247
PspEI GGTNACC 1 cut(s) 10
PspGI CCWGG 1 cut(s) 247
PspN4I GGNNCC 2 cut(s) 71, 1113
PspPI GGNCC 2 cut(s) 70, 85
PstNI CAGNNNCTG 1 cut(s) 893
PsuI RGATCY 1 cut(s) 1159
PsyI GACNNNGTC 1 cut(s) 341
PvuII CAGCTG 1 cut(s) 335
RsaI GTAC 2 cut(s) 307, 609
RsaNI GTAC 2 cut(s) 306, 608
RseI CAYNNNNRTG 2 cut(s) 78, 755
SapI GCTCTTC 1 cut(s) 579
SaqAI TTAA 2 cut(s) 369, 1088
SatI GCNGC 2 cut(s) 333, 1140
Sau3AI GATC 3 cut(s) 124, 140, 1159
Sau96I GGNCC 2 cut(s) 70, 85
SchI GAGTC 3 cut(s) 191, 459, 779
ScrFI CCNGG 1 cut(s) 249
SduI GDGCHC 1 cut(s) 591
SfaNI GCATC 3 cut(s) 340, 696, 944
SfcI CTRYAG 1 cut(s) 1153
SmiMI CAYNNNNRTG 2 cut(s) 78, 755
SmlI CTYRAG 2 cut(s) 439, 677
SmoI CTYRAG 2 cut(s) 439, 677
Sse9I AATT 8 cut(s) 216, 542, 576, 692, 715, 746, 882, 1018
SseBI AGGCCT 1 cut(s) 792
SsiI CCGC 3 cut(s) 66, 291, 826
SspI AATATT 1 cut(s) 1078
StuI AGGCCT 1 cut(s) 792
StyD4I CCNGG 1 cut(s) 247
StyI CCWWGG 3 cut(s) 396, 701, 1107
TaaI ACNGT 3 cut(s) 268, 502, 655
TaiI ACGT 3 cut(s) 311, 369, 816
TaqI TCGA 3 cut(s) 139, 147, 180
TasI AATT 8 cut(s) 216, 542, 576, 692, 715, 746, 882, 1018
TatI WGTACW 1 cut(s) 607
TfiI GAWTC 2 cut(s) 512, 846
Tru1I TTAA 2 cut(s) 369, 1088
Tru9I TTAA 2 cut(s) 369, 1088
TseFI GTSAC 3 cut(s) 10, 260, 871
TseI GCWGC 2 cut(s) 332, 1139
Tsp45I GTSAC 3 cut(s) 10, 260, 871
TspDTI ATGAA 3 cut(s) 17, 34, 103
TspGWI ACGGA 1 cut(s) 767
Tth111I GACNNNGTC 1 cut(s) 341
Van91I CCANNNNNTGG 1 cut(s) 1039
XapI RAATTY 5 cut(s) 542, 576, 692, 746, 1018
XmiI GTMKAC 1 cut(s) 810
ZraI GACGTC 1 cut(s) 814
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.