RLG00000006927

Belongs to the oxygen-dependent FAD-linked oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0000925
Physical Location & Seq
Forward (+)
11954278 .. 11956731
2454 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000006927

Sequence Viewer

Length: 1422 bp
ATGTTTTTACACTCGGATGCACCATTCCAACTCAAGCAAGGAAATAATTTTCACTACAAACAGTCTGTAAATAATTTTCCTTTGAACTACAGGGATCTTGACTTGGGGAGGAACAACAATGATGGCAATACAAGCTATGCGAAAGCAAGCATTTGGGGTTTGAAGTATTTCAAGAGCAATTTCAGGAGACTTGTTCATGTTAAGATCTTGAACCTCAGATTCCTGAACAATTCCACACCTAAACCAGAGGCCATCATTACTCCCTTTGATGAATCTCAGGTTCAAGCAGCTGTAATTTGCTCCAAGAAAAGTGGCATACAAATAAGAATCCGAAGCGGGGGTCATGATTATGAGGGCCTATCTTATGTGTCTAGAGCTCCTTTCATCATCATTGACCTTTTCAATCTCCGTTCCATCGATGTTGATATAAAGAATGAGAGTGCTTGGGTCAAATCAGGCGCTACTCTTGGAGAGTTGTATTACAACATTGCACAGAGAGTAAAGTCTATGCCTTTCCAGCAGGGACTTGTCCCACCGTTTGTGCTGGGGGACACATCAGTGGAGGCGGAGTCGGCTATCAGAGGAGGAGGAGGATCAAGCTTTGGAGTCATTCTAGCATGGAAACTTAGACTGGTTCCTGTTCCCCCAACTGTAACAGTTTGCGACGTTACAAAGACAAAAGAACAAGGTGCAACCAAACTTCTTTTGAAATGGCAAAACATTGCAGACAAGCTTCCTAAAGACCTTTTCCTACATTCAGTTGTAGGAAGTAGTGACAACACTATTACAGTTGAATTCGGTTCCTTGTTTCTCGGGCGGGTCGACAAAGCTGTCCAGTTTGTTTTGGACTCTGCTGGCTACTCGATCCACAAATCCTTGGAGATTTTGCTGAAGCGCCGGCAATTCAGCTACTTCTTCAAAGCAAAATCAGACTTTGTGACTGAACCCATCTCAGAAGCTGGCTTGCAAGGCCTATGGCACATACTGCTTGAAGCAAACACATCCTTTATGATATTGACACCATATGGAGGAAAAATGAGTGAGATTTCCGATTCAGAAACTGCTTTCCCACATCGAAAAGGAAACAAATATGAAATCCAGTATATGGTTACTTGGGGTGATGGCAAGGACACCAAGAAGTATGCTGGATTTATGAGAAGGCTGTATGCATACATGGCCCCATATGTTTCAAAGTCTCCTAGAGCTGCCTATTTGAATTATAGGGATCTTGATTTGGGGAGGAACGGTTATGGCAATACAAGCTATGCACAAGCAAGCATTTGGGGTTTGAAGTACTTCAAAAACAATTTTAGGAGACTTGTTCATGTTAAGACCGTAAAACATCACGCAAAAATTAGAGATTTGATTTTTCAAATAGTTCTCAAAGCACGAGTGGAAATAAAGCAAAATTATGTTCGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
BBE FAD_binding_4

Protein Analysis

474

Amino Acids

53.64

Weight (kDa)

9.73

Isoelectric Point (pI)

40.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BBE PF08031 28 - 68 5.1e-06 Berberine and berberine like
FAD_binding_4 PF01565 82 - 183 2.8e-12 FAD binding domain
BBE PF08031 403 - 445 1.6e-08 Berberine and berberine like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 830
AccB7I CCANNNNNTGG 1 cut(s) 1105
AccI GTMKAC 1 cut(s) 822
AciI CCGC 3 cut(s) 336, 566, 817
AclWI GGATC 4 cut(s) 102, 601, 859, 1233
AcsI RAATTY 1 cut(s) 794
AcuI CTGAAG 1 cut(s) 911
AfaI GTAC 1 cut(s) 1295
AfiI CCNNNNNNNGG 3 cut(s) 337, 1028, 1105
AleI CACNNNNGTG 1 cut(s) 557
Alw21I GWGCWC 1 cut(s) 379
Alw26I GTCTC 3 cut(s) 181, 1200, 1309
AlwI GGATC 4 cut(s) 102, 601, 859, 1233
AlwNI CAGNNNCTG 2 cut(s) 959, 1061
Ama87I CYCGRG 1 cut(s) 812
AoxI GGCC 4 cut(s) 249, 355, 970, 1176
ApeKI GCWGC 2 cut(s) 287, 1205
ApoI RAATTY 1 cut(s) 794
ArsI GACNNNNNNTTYG 2 cut(s) 325, 357
Asp700I GAANNNNTTC 2 cut(s) 167, 1295
AspLEI GCGC 2 cut(s) 461, 897
AspS9I GGNCC 2 cut(s) 355, 1177
AsuHPI GGTGA 1 cut(s) 1130
AvaI CYCGRG 1 cut(s) 812
BanII GRGCYC 1 cut(s) 379
BauI CACGAG 1 cut(s) 1389
Bbv12I GWGCWC 1 cut(s) 379
BbvI GCAGC 2 cut(s) 299, 1192
BccI CCATC 5 cut(s) 116, 260, 422, 956, 1115
BcoDI GTCTC 3 cut(s) 181, 1200, 1309
BfaI CTAG 3 cut(s) 372, 614, 1200
BfmI CTRYAG 1 cut(s) 88
BfoI RGCGCY 2 cut(s) 462, 898
BglII AGATCT 1 cut(s) 204
BisI GCNGC 2 cut(s) 288, 1206
BlsI GCNGC 2 cut(s) 289, 1207
BmcAI AGTACT 1 cut(s) 1295
BmeT110I CYCGRG 1 cut(s) 812
BmgT120I GGNCC 2 cut(s) 355, 1177
BmiI GGNNCC 3 cut(s) 636, 802, 1179
BmsI GCATC 1 cut(s) 7
BpuEI CTTGAG 1 cut(s) 17
Bsa29I ATCGAT 1 cut(s) 417
BsaJI CCNNGG 1 cut(s) 876
BsaXI ACNNNNNCTCC 4 cut(s) 554, 584, 1231, 1261
Bsc4I CCNNNNNNNGG 3 cut(s) 337, 1028, 1105
Bse118I RCCGGY 1 cut(s) 897
Bse1I ACTGG 3 cut(s) 636, 835, 1099
Bse3DI GCAATG 2 cut(s) 486, 720
BseCI ATCGAT 1 cut(s) 417
BseDI CCNNGG 1 cut(s) 876
BseGI GGATG 2 cut(s) 22, 1001
BseLI CCNNNNNNNGG 3 cut(s) 337, 1028, 1105
BseMI GCAATG 2 cut(s) 486, 720
BseMII CTCAG 3 cut(s) 229, 290, 966
BseNI ACTGG 3 cut(s) 636, 835, 1099
BseRI GAGGAG 3 cut(s) 597, 600, 603
BseXI GCAGC 2 cut(s) 299, 1192
BseYI CCCAGC 1 cut(s) 544
BshFI GGCC 4 cut(s) 251, 357, 972, 1178
BshVI ATCGAT 1 cut(s) 417
BsiHKAI GWGCWC 1 cut(s) 379
BsiHKCI CYCGRG 1 cut(s) 812
BsiSI CCGG 1 cut(s) 898
BslFI GGGAC 3 cut(s) 515, 537, 563
BslI CCNNNNNNNGG 3 cut(s) 337, 1028, 1105
BsmAI GTCTC 3 cut(s) 181, 1200, 1309
BsmFI GGGAC 3 cut(s) 515, 537, 563
BsnI GGCC 4 cut(s) 251, 357, 972, 1178
BsoBI CYCGRG 1 cut(s) 812
Bsp1286I GDGCHC 1 cut(s) 379
Bsp143I GATC 5 cut(s) 94, 204, 593, 864, 1225
BspACI CCGC 3 cut(s) 336, 566, 817
BspANI GGCC 4 cut(s) 251, 357, 972, 1178
BspCNI CTCAG 3 cut(s) 228, 289, 965
BspDI ATCGAT 1 cut(s) 417
BspHI TCATGA 1 cut(s) 343
BspLI GGNNCC 3 cut(s) 636, 802, 1179
BspPI GGATC 4 cut(s) 102, 601, 859, 1233
BsrDI GCAATG 2 cut(s) 486, 720
BsrFI RCCGGY 1 cut(s) 897
BsrI ACTGG 3 cut(s) 636, 835, 1099
BssAI RCCGGY 1 cut(s) 897
BssECI CCNNGG 1 cut(s) 876
BssMI GATC 5 cut(s) 94, 204, 593, 864, 1225
BssSI CACGAG 1 cut(s) 1389
BssT1I CCWWGG 1 cut(s) 876
Bst2BI CACGAG 1 cut(s) 1389
Bst4CI ACNGT 7 cut(s) 63, 537, 652, 658, 790, 1247, 1336
BstAPI GCANNNNNTGC 1 cut(s) 985
BstC8I GCNNGC 6 cut(s) 148, 856, 899, 961, 965, 1276
BstDEI CTNAG 4 cut(s) 215, 276, 626, 952
BstF5I GGATG 2 cut(s) 22, 1001
BstH2I RGCGCY 2 cut(s) 462, 898
BstHHI GCGC 2 cut(s) 461, 897
BstKTI GATC 5 cut(s) 97, 207, 596, 867, 1228
BstMAI GTCTC 3 cut(s) 181, 1200, 1309
BstMBI GATC 5 cut(s) 94, 204, 593, 864, 1225
BstMWI GCNNNNNNNGC 7 cut(s) 132, 517, 572, 969, 985, 1175, 1260
BstSFI CTRYAG 1 cut(s) 88
BstV1I GCAGC 2 cut(s) 299, 1192
BstX2I RGATCY 3 cut(s) 94, 204, 1225
BstYI RGATCY 3 cut(s) 94, 204, 1225
Bsu15I ATCGAT 1 cut(s) 417
BsuRI GGCC 4 cut(s) 251, 357, 972, 1178
BsuTUI ATCGAT 1 cut(s) 417
BtsCI GGATG 2 cut(s) 22, 1001
BtsIMutI CAGTG 1 cut(s) 564
Cac8I GCNNGC 6 cut(s) 148, 856, 899, 961, 965, 1276
CaiI CAGNNNCTG 2 cut(s) 959, 1061
CciI TCATGA 1 cut(s) 343
CfoI GCGC 2 cut(s) 461, 897
Cfr10I RCCGGY 1 cut(s) 897
Cfr13I GGNCC 2 cut(s) 355, 1177
ClaI ATCGAT 1 cut(s) 417
Csp6I GTAC 1 cut(s) 1294
CspCI CAANNNNNGTGG 2 cut(s) 292, 327
CviAII CATG 5 cut(s) 197, 344, 618, 1174, 1325
CviQI GTAC 1 cut(s) 1294
DdeI CTNAG 4 cut(s) 215, 276, 626, 952
DpnI GATC 5 cut(s) 96, 206, 595, 866, 1227
DpnII GATC 5 cut(s) 94, 204, 593, 864, 1225
DrdI GACNNNNNNGTC 1 cut(s) 830
DseDI GACNNNNNNGTC 1 cut(s) 830
EciI GGCGGA 1 cut(s) 581
Ecl136II GAGCTC 1 cut(s) 377
Eco130I CCWWGG 1 cut(s) 876
Eco147I AGGCCT 1 cut(s) 972
Eco24I GRGCYC 1 cut(s) 379
Eco53kI GAGCTC 1 cut(s) 377
Eco57I CTGAAG 1 cut(s) 911
Eco88I CYCGRG 1 cut(s) 812
EcoICRI GAGCTC 1 cut(s) 377
EcoO109I RGGNCCY 1 cut(s) 355
EcoRI GAATTC 1 cut(s) 794
EcoT14I CCWWGG 1 cut(s) 876
EcoT22I ATGCAT 1 cut(s) 1171
EcoT38I GRGCYC 1 cut(s) 379
ErhI CCWWGG 1 cut(s) 876
FaeI CATG 5 cut(s) 200, 347, 621, 1177, 1328
FaqI GGGAC 3 cut(s) 515, 537, 563
FatI CATG 5 cut(s) 196, 343, 617, 1173, 1324
FauI CCCGC 2 cut(s) 329, 810
FauNDI CATATG 2 cut(s) 1024, 1183
FblI GTMKAC 1 cut(s) 822
Fnu4HI GCNGC 2 cut(s) 288, 1206
FokI GGATG 2 cut(s) 29, 988
FriOI GRGCYC 1 cut(s) 379
Fsp4HI GCNGC 2 cut(s) 288, 1206
FspBI CTAG 3 cut(s) 372, 614, 1200
GlaI GCGC 2 cut(s) 460, 896
GluI GCNGC 2 cut(s) 288, 1206
GsaI CCCAGC 1 cut(s) 548
HaeII RGCGCY 2 cut(s) 462, 898
HaeIII GGCC 4 cut(s) 251, 357, 972, 1178
HapII CCGG 1 cut(s) 898
HhaI GCGC 2 cut(s) 461, 897
Hin1II CATG 5 cut(s) 200, 347, 621, 1177, 1328
Hin6I GCGC 2 cut(s) 459, 895
HinP1I GCGC 2 cut(s) 459, 895
HincII GTYRAC 1 cut(s) 823
HindII GTYRAC 1 cut(s) 823
HindIII AAGCTT 2 cut(s) 598, 731
HinfI GANTC 7 cut(s) 219, 272, 327, 569, 606, 848, 1052
HpaII CCGG 1 cut(s) 898
HphI GGTGA 1 cut(s) 1130
Hpy166II GTNNAC 1 cut(s) 823
Hpy188I TCNGA 8 cut(s) 16, 218, 332, 581, 931, 955, 1051, 1057
Hpy188III TCNNGA 8 cut(s) 98, 172, 184, 208, 223, 344, 372, 1229
Hpy8I GTNNAC 1 cut(s) 823
Hpy99I CGWCG 1 cut(s) 668
HpyAV CCTTC 1 cut(s) 1152
HpyCH4III ACNGT 7 cut(s) 63, 537, 652, 658, 790, 1247, 1336
HpyCH4IV ACGT 1 cut(s) 666
HpyCH4V TGCA 7 cut(s) 20, 491, 692, 725, 967, 1169, 1268
HpyF10VI GCNNNNNNNGC 7 cut(s) 132, 517, 572, 969, 985, 1175, 1260
HpyF3I CTNAG 4 cut(s) 215, 276, 626, 952
HpySE526I ACGT 1 cut(s) 666
Hsp92II CATG 5 cut(s) 200, 347, 621, 1177, 1328
HspAI GCGC 2 cut(s) 459, 895
KroI GCCGGC 1 cut(s) 897
KroNI GCCGGC 1 cut(s) 899
Kzo9I GATC 5 cut(s) 94, 204, 593, 864, 1225
LmnI GCTCC 2 cut(s) 305, 382
Lsp1109I GCAGC 2 cut(s) 299, 1192
LweI GCATC 1 cut(s) 7
MaeI CTAG 3 cut(s) 372, 614, 1200
MaeII ACGT 1 cut(s) 666
MaeIII GTNAC 5 cut(s) 652, 667, 773, 937, 1108
MalI GATC 5 cut(s) 96, 206, 595, 866, 1227
MboI GATC 5 cut(s) 94, 204, 593, 864, 1225
MboII GAAGA 1 cut(s) 907
MflI RGATCY 3 cut(s) 94, 204, 1225
MhlI GDGCHC 1 cut(s) 379
MlyI GAGTC 3 cut(s) 578, 615, 842
MmeI TCCRAC 1 cut(s) 52
Mph1103I ATGCAT 1 cut(s) 1171
MroNI GCCGGC 1 cut(s) 897
MroXI GAANNNNTTC 2 cut(s) 167, 1295
MseI TTAA 2 cut(s) 201, 1329
MslI CAYNNNNRTG 3 cut(s) 15, 348, 557
MspA1I CMGCKG 1 cut(s) 290
MspI CCGG 1 cut(s) 898
MwoI GCNNNNNNNGC 7 cut(s) 132, 517, 572, 969, 985, 1175, 1260
NaeI GCCGGC 1 cut(s) 899
NdeI CATATG 2 cut(s) 1024, 1183
NdeII GATC 5 cut(s) 94, 204, 593, 864, 1225
NgoMIV GCCGGC 1 cut(s) 897
NlaIII CATG 5 cut(s) 200, 347, 621, 1177, 1328
NlaIV GGNNCC 3 cut(s) 636, 802, 1179
NmuCI GTSAC 2 cut(s) 773, 937
NsiI ATGCAT 1 cut(s) 1171
OliI CACNNNNGTG 1 cut(s) 557
PagI TCATGA 1 cut(s) 343
PceI AGGCCT 1 cut(s) 972
PcsI WCGNNNNNNNCGW 1 cut(s) 819
PdiI GCCGGC 1 cut(s) 899
PdmI GAANNNNTTC 2 cut(s) 167, 1295
PfeI GAWTC 4 cut(s) 219, 272, 327, 1052
PflMI CCANNNNNTGG 1 cut(s) 1105
PkrI GCNGC 2 cut(s) 289, 1207
PleI GAGTC 3 cut(s) 577, 614, 842
PpsI GAGTC 3 cut(s) 577, 614, 842
Psp124BI GAGCTC 1 cut(s) 379
PspFI CCCAGC 1 cut(s) 544
PspN4I GGNNCC 3 cut(s) 636, 802, 1179
PspPI GGNCC 2 cut(s) 355, 1177
PstNI CAGNNNCTG 2 cut(s) 959, 1061
PsuI RGATCY 3 cut(s) 94, 204, 1225
PvuII CAGCTG 1 cut(s) 290
RsaI GTAC 1 cut(s) 1295
RsaNI GTAC 1 cut(s) 1294
RseI CAYNNNNRTG 3 cut(s) 15, 348, 557
SacI GAGCTC 1 cut(s) 379
SalI GTCGAC 1 cut(s) 821
SaqAI TTAA 2 cut(s) 201, 1329
SatI GCNGC 2 cut(s) 288, 1206
Sau3AI GATC 5 cut(s) 94, 204, 593, 864, 1225
Sau96I GGNCC 2 cut(s) 355, 1177
ScaI AGTACT 1 cut(s) 1295
SchI GAGTC 3 cut(s) 578, 615, 842
SduI GDGCHC 1 cut(s) 379
SfaNI GCATC 1 cut(s) 7
SfcI CTRYAG 1 cut(s) 88
SmiMI CAYNNNNRTG 3 cut(s) 15, 348, 557
SmlI CTYRAG 1 cut(s) 32
SmoI CTYRAG 1 cut(s) 32
SseBI AGGCCT 1 cut(s) 972
SsiI CCGC 3 cut(s) 336, 566, 817
SspMI CTAG 3 cut(s) 372, 614, 1200
SstI GAGCTC 1 cut(s) 379
StuI AGGCCT 1 cut(s) 972
StyI CCWWGG 1 cut(s) 876
TaaI ACNGT 7 cut(s) 63, 537, 652, 658, 790, 1247, 1336
TaiI ACGT 1 cut(s) 669
TaqI TCGA 5 cut(s) 417, 822, 863, 1075, 1417
TatI WGTACW 1 cut(s) 1293
TfiI GAWTC 4 cut(s) 219, 272, 327, 1052
Tru1I TTAA 2 cut(s) 201, 1329
Tru9I TTAA 2 cut(s) 201, 1329
TscAI CASTG 1 cut(s) 564
TseFI GTSAC 2 cut(s) 773, 937
TseI GCWGC 2 cut(s) 287, 1205
Tsp45I GTSAC 2 cut(s) 773, 937
TspDTI ATGAA 5 cut(s) 185, 285, 373, 1107, 1313
TspGWI ACGGA 1 cut(s) 398
TspRI CASTG 1 cut(s) 564
Van91I CCANNNNNTGG 1 cut(s) 1105
XapI RAATTY 1 cut(s) 794
XbaI TCTAGA 1 cut(s) 371
XmiI GTMKAC 1 cut(s) 822
XmnI GAANNNNTTC 2 cut(s) 167, 1295
XspI CTAG 3 cut(s) 372, 614, 1200
ZrmI AGTACT 1 cut(s) 1295
Zsp2I ATGCAT 1 cut(s) 1171
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.