Rmu_sc0009555.1_g000002

Belongs to the oxygen-dependent FAD-linked oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009555.1
OG0000925
Physical Location & Seq
Reverse (-)
3613 .. 9173
5561 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009555.1_g000002.1.cds

Sequence Viewer

Length: 1044 bp
atgagaagaagaaattttggtgaggaggtgtggatcttggtgaggagaagaaatagagagagattgaattgtggtgtgcggcttgggaggatagatgaatgggtggtggaattgattatggtgaggttgtatgtttcttgccgaagaggaagaatgggaatggatagtctggtcactggtggtgtgcggctagggaggatgatggataattgtagggctgccactttagtttgcgacgttacaaagacaaaagaacaaggtgcaaccaaacttcttttgaaatggcaaaacattgcagacaagcttccggaagaccttttcctacattctgttgtaggaagtagtgacaacgctattacagttgaattcggttccctgtttcttgggcgggtcgacaaagctgtccaggtgatacaggaaaacttcccagagttgagtttagagagcagccattgcagtgagatgagttggattcagtctgttttggactctgctggttactcgatacacgaatccttggagattttgctgaagcgccggcaattcagcaacttcttcaaagcaaaatcagactttgtgactgaacccatctcagaagctggcttggaaggcttatggcacatattgcttgaagcaaacacatcctttatgatattgacaccatatggaggaaaaatgagtgagatttccgattcagaaactgctttcccacatcgaaaaggaaacaaatacgaaatccagtatatggttacttggggtgatggcaaggacacgaagaagtatgttggatttatgagaaggctgtatgcatacatggccccgtatgtttcgaagtctcctagagctgcctatttgaattatagggatcttgatttggggaggaacagttatggcaatacaagctatgcacaagcaagcatttggggtttgaagtacttcaagaacaactttaggagacttgttcatgttaagaccttggttgatcctggcaacttctttaggaatgagcaaagcatccccgtgttttcgtcaggaaaaaagtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
BBE FAD_binding_4

Protein Analysis

347

Amino Acids

39.85

Weight (kDa)

9.42

Isoelectric Point (pI)

47.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 401
AccB7I CCANNNNNTGG 1 cut(s) 745
AccI GTMKAC 1 cut(s) 393
AccIII TCCGGA 1 cut(s) 307
AciI CCGC 3 cut(s) 79, 187, 388
AclWI GGATC 3 cut(s) 41, 873, 977
AcsI RAATTY 2 cut(s) 13, 365
AcuI CTGAAG 1 cut(s) 551
AfaI GTAC 1 cut(s) 935
AfiI CCNNNNNNNGG 2 cut(s) 668, 745
AgsI TTSAA 8 cut(s) 67, 280, 365, 559, 632, 856, 931, 940
AjnI CCWGG 2 cut(s) 405, 985
AluBI AGCT 5 cut(s) 304, 401, 599, 845, 903
AluI AGCT 5 cut(s) 304, 401, 599, 845, 903
Alw26I GTCTC 2 cut(s) 840, 949
AlwI GGATC 3 cut(s) 41, 873, 977
AlwNI CAGNNNCTG 2 cut(s) 599, 701
Aor13HI TCCGGA 1 cut(s) 307
AoxI GGCC 1 cut(s) 816
ApeKI GCWGC 3 cut(s) 218, 447, 845
ApoI RAATTY 2 cut(s) 13, 365
Asp700I GAANNNNTTC 1 cut(s) 935
AspLEI GCGC 1 cut(s) 537
AspS9I GGNCC 1 cut(s) 817
AsuHPI GGTGA 5 cut(s) 32, 52, 133, 421, 770
AsuII TTCGAA 1 cut(s) 830
BbsI GAAGAC 1 cut(s) 318
BbvI GCAGC 3 cut(s) 205, 459, 832
BccI CCATC 3 cut(s) 196, 596, 755
BciT130I CCWGG 2 cut(s) 407, 987
BcoDI GTCTC 2 cut(s) 840, 949
BfaI CTAG 2 cut(s) 191, 840
BfoI RGCGCY 1 cut(s) 538
BisI GCNGC 5 cut(s) 80, 188, 219, 448, 846
BlsI GCNGC 5 cut(s) 81, 189, 220, 449, 847
BmcAI AGTACT 1 cut(s) 935
Bme1390I CCNGG 2 cut(s) 407, 987
BmgT120I GGNCC 1 cut(s) 817
BmiI GGNNCC 2 cut(s) 373, 819
BmrFI CCNGG 2 cut(s) 407, 987
BmsI GCATC 1 cut(s) 1023
BpiI GAAGAC 1 cut(s) 318
Bpu14I TTCGAA 1 cut(s) 830
BsaJI CCNNGG 2 cut(s) 516, 975
BsaWI WCCGGW 1 cut(s) 307
BsaXI ACNNNNNCTCC 2 cut(s) 871, 901
Bsc4I CCNNNNNNNGG 2 cut(s) 668, 745
Bse118I RCCGGY 1 cut(s) 537
Bse1I ACTGG 2 cut(s) 181, 739
Bse3DI GCAATG 2 cut(s) 291, 451
BseAI TCCGGA 1 cut(s) 307
BseBI CCWGG 2 cut(s) 407, 987
BseDI CCNNGG 2 cut(s) 516, 975
BseGI GGATG 3 cut(s) 204, 641, 1014
BseLI CCNNNNNNNGG 2 cut(s) 668, 745
BseMI GCAATG 2 cut(s) 291, 451
BseMII CTCAG 1 cut(s) 606
BseNI ACTGG 2 cut(s) 181, 739
BseRI GAGGAG 2 cut(s) 38, 58
BseXI GCAGC 3 cut(s) 205, 459, 832
BshFI GGCC 1 cut(s) 818
BsiSI CCGG 2 cut(s) 308, 538
BslI CCNNNNNNNGG 2 cut(s) 668, 745
BsmAI GTCTC 2 cut(s) 840, 949
BsnI GGCC 1 cut(s) 818
Bsp119I TTCGAA 1 cut(s) 830
Bsp13I TCCGGA 1 cut(s) 307
Bsp143I GATC 3 cut(s) 33, 865, 982
BspACI CCGC 3 cut(s) 79, 187, 388
BspANI GGCC 1 cut(s) 818
BspCNI CTCAG 1 cut(s) 605
BspEI TCCGGA 1 cut(s) 307
BspLI GGNNCC 2 cut(s) 373, 819
BspPI GGATC 3 cut(s) 41, 873, 977
BspT104I TTCGAA 1 cut(s) 830
BsrDI GCAATG 2 cut(s) 291, 451
BsrFI RCCGGY 1 cut(s) 537
BsrI ACTGG 2 cut(s) 181, 739
BssAI RCCGGY 1 cut(s) 537
BssECI CCNNGG 2 cut(s) 516, 975
BssMI GATC 3 cut(s) 33, 865, 982
BssT1I CCWWGG 2 cut(s) 516, 975
Bst2UI CCWGG 2 cut(s) 407, 987
Bst4CI ACNGT 2 cut(s) 361, 887
Bst6I CTCTTC 1 cut(s) 139
BstAPI GCANNNNNTGC 2 cut(s) 453, 625
BstBI TTCGAA 1 cut(s) 830
BstC8I GCNNGC 3 cut(s) 539, 601, 916
BstDEI CTNAG 1 cut(s) 592
BstF5I GGATG 3 cut(s) 204, 641, 1014
BstH2I RGCGCY 1 cut(s) 538
BstHHI GCGC 1 cut(s) 537
BstKTI GATC 3 cut(s) 36, 868, 985
BstMAI GTCTC 2 cut(s) 840, 949
BstMBI GATC 3 cut(s) 33, 865, 982
BstMWI GCNNNNNNNGC 5 cut(s) 453, 609, 625, 815, 900
BstNI CCWGG 2 cut(s) 407, 987
BstSCI CCNGG 2 cut(s) 405, 985
BstV1I GCAGC 3 cut(s) 205, 459, 832
BstV2I GAAGAC 1 cut(s) 318
BstX2I RGATCY 2 cut(s) 33, 865
BstYI RGATCY 2 cut(s) 33, 865
BsuRI GGCC 1 cut(s) 818
BtsCI GGATG 3 cut(s) 204, 641, 1014
BtsI GCAGTG 1 cut(s) 463
BtsIMutI CAGTG 2 cut(s) 174, 463
Cac8I GCNNGC 3 cut(s) 539, 601, 916
CaiI CAGNNNCTG 2 cut(s) 599, 701
CfoI GCGC 1 cut(s) 537
Cfr10I RCCGGY 1 cut(s) 537
Cfr13I GGNCC 1 cut(s) 817
Csp6I GTAC 1 cut(s) 934
CviAII CATG 2 cut(s) 814, 965
CviQI GTAC 1 cut(s) 934
DdeI CTNAG 1 cut(s) 592
DpnI GATC 3 cut(s) 35, 867, 984
DpnII GATC 3 cut(s) 33, 865, 982
DrdI GACNNNNNNGTC 1 cut(s) 401
DseDI GACNNNNNNGTC 1 cut(s) 401
Eam1104I CTCTTC 1 cut(s) 139
EarI CTCTTC 1 cut(s) 139
Eco130I CCWWGG 2 cut(s) 516, 975
Eco57I CTGAAG 1 cut(s) 551
EcoRI GAATTC 1 cut(s) 365
EcoRII CCWGG 2 cut(s) 405, 985
EcoT14I CCWWGG 2 cut(s) 516, 975
EcoT22I ATGCAT 1 cut(s) 811
ErhI CCWWGG 2 cut(s) 516, 975
FaeI CATG 2 cut(s) 817, 968
FalI AAGNNNNNCTT 2 cut(s) 932, 964
FatI CATG 2 cut(s) 813, 964
FauI CCCGC 1 cut(s) 381
FauNDI CATATG 1 cut(s) 664
FblI GTMKAC 1 cut(s) 393
Fnu4HI GCNGC 5 cut(s) 80, 188, 219, 448, 846
FokI GGATG 3 cut(s) 211, 628, 1001
Fsp4HI GCNGC 5 cut(s) 80, 188, 219, 448, 846
FspBI CTAG 2 cut(s) 191, 840
GlaI GCGC 1 cut(s) 536
GluI GCNGC 5 cut(s) 80, 188, 219, 448, 846
HaeII RGCGCY 1 cut(s) 538
HaeIII GGCC 1 cut(s) 818
HapII CCGG 2 cut(s) 308, 538
HhaI GCGC 1 cut(s) 537
Hin1II CATG 2 cut(s) 817, 968
Hin6I GCGC 1 cut(s) 535
HinP1I GCGC 1 cut(s) 535
HincII GTYRAC 1 cut(s) 394
HindII GTYRAC 1 cut(s) 394
HindIII AAGCTT 1 cut(s) 302
HinfI GANTC 4 cut(s) 472, 488, 512, 692
HpaII CCGG 2 cut(s) 308, 538
HphI GGTGA 5 cut(s) 32, 52, 133, 421, 770
Hpy166II GTNNAC 1 cut(s) 394
Hpy188I TCNGA 4 cut(s) 571, 595, 691, 697
Hpy188III TCNNGA 4 cut(s) 308, 869, 940, 1032
Hpy8I GTNNAC 1 cut(s) 394
Hpy99I CGWCG 1 cut(s) 239
HpyAV CCTTC 2 cut(s) 602, 792
HpyCH4III ACNGT 2 cut(s) 361, 887
HpyCH4IV ACGT 1 cut(s) 237
HpyCH4V TGCA 5 cut(s) 263, 296, 456, 809, 908
HpyF10VI GCNNNNNNNGC 5 cut(s) 453, 609, 625, 815, 900
HpyF3I CTNAG 1 cut(s) 592
HpySE526I ACGT 1 cut(s) 237
Hsp92II CATG 2 cut(s) 817, 968
HspAI GCGC 1 cut(s) 535
Kpn2I TCCGGA 1 cut(s) 307
KroI GCCGGC 1 cut(s) 537
KroNI GCCGGC 1 cut(s) 539
Kzo9I GATC 3 cut(s) 33, 865, 982
Lsp1109I GCAGC 3 cut(s) 205, 459, 832
LweI GCATC 1 cut(s) 1023
MaeI CTAG 2 cut(s) 191, 840
MaeII ACGT 1 cut(s) 237
MaeIII GTNAC 6 cut(s) 172, 238, 344, 497, 577, 748
MalI GATC 3 cut(s) 35, 867, 984
MboI GATC 3 cut(s) 33, 865, 982
MboII GAAGA 8 cut(s) 18, 21, 60, 156, 162, 323, 547, 787
MflI RGATCY 2 cut(s) 33, 865
MluCI AATT 7 cut(s) 13, 67, 110, 208, 365, 542, 856
MlyI GAGTC 1 cut(s) 482
MmeI TCCRAC 2 cut(s) 449, 766
MnlI CCTC 9 cut(s) 16, 19, 36, 81, 117, 140, 189, 662, 873
Mph1103I ATGCAT 1 cut(s) 811
MroI TCCGGA 1 cut(s) 307
MroNI GCCGGC 1 cut(s) 537
MroXI GAANNNNTTC 1 cut(s) 935
MseI TTAA 1 cut(s) 969
MslI CAYNNNNRTG 2 cut(s) 456, 1019
MspI CCGG 2 cut(s) 308, 538
MspR9I CCNGG 2 cut(s) 407, 987
MvaI CCWGG 2 cut(s) 407, 987
MwoI GCNNNNNNNGC 5 cut(s) 453, 609, 625, 815, 900
NaeI GCCGGC 1 cut(s) 539
NdeI CATATG 1 cut(s) 664
NdeII GATC 3 cut(s) 33, 865, 982
NgoMIV GCCGGC 1 cut(s) 537
NlaIII CATG 2 cut(s) 817, 968
NlaIV GGNNCC 2 cut(s) 373, 819
NmuCI GTSAC 3 cut(s) 172, 344, 577
NsiI ATGCAT 1 cut(s) 811
NspV TTCGAA 1 cut(s) 830
PdiI GCCGGC 1 cut(s) 539
PdmI GAANNNNTTC 1 cut(s) 935
PfeI GAWTC 3 cut(s) 472, 512, 692
PflMI CCANNNNNTGG 1 cut(s) 745
PkrI GCNGC 5 cut(s) 81, 189, 220, 449, 847
PleI GAGTC 1 cut(s) 482
PpsI GAGTC 1 cut(s) 482
Psp6I CCWGG 2 cut(s) 405, 985
PspGI CCWGG 2 cut(s) 405, 985
PspN4I GGNNCC 2 cut(s) 373, 819
PspPI GGNCC 1 cut(s) 817
PstNI CAGNNNCTG 2 cut(s) 599, 701
PsuI RGATCY 2 cut(s) 33, 865
RsaI GTAC 1 cut(s) 935
RsaNI GTAC 1 cut(s) 934
RseI CAYNNNNRTG 2 cut(s) 456, 1019
SalI GTCGAC 1 cut(s) 392
SaqAI TTAA 1 cut(s) 969
SatI GCNGC 5 cut(s) 80, 188, 219, 448, 846
Sau3AI GATC 3 cut(s) 33, 865, 982
Sau96I GGNCC 1 cut(s) 817
ScaI AGTACT 1 cut(s) 935
SchI GAGTC 1 cut(s) 482
ScrFI CCNGG 2 cut(s) 407, 987
SfaNI GCATC 1 cut(s) 1023
SfuI TTCGAA 1 cut(s) 830
SmiMI CAYNNNNRTG 2 cut(s) 456, 1019
Sse9I AATT 7 cut(s) 13, 67, 110, 208, 365, 542, 856
SsiI CCGC 3 cut(s) 79, 187, 388
SspMI CTAG 2 cut(s) 191, 840
StyD4I CCNGG 2 cut(s) 405, 985
StyI CCWWGG 2 cut(s) 516, 975
TaaI ACNGT 2 cut(s) 361, 887
TaiI ACGT 1 cut(s) 240
TaqI TCGA 4 cut(s) 393, 503, 715, 830
TasI AATT 7 cut(s) 13, 67, 110, 208, 365, 542, 856
TatI WGTACW 1 cut(s) 933
TauI GCSGC 2 cut(s) 82, 190
TfiI GAWTC 3 cut(s) 472, 512, 692
Tru1I TTAA 1 cut(s) 969
Tru9I TTAA 1 cut(s) 969
TscAI CASTG 2 cut(s) 181, 463
TseFI GTSAC 3 cut(s) 172, 344, 577
TseI GCWGC 3 cut(s) 218, 447, 845
Tsp45I GTSAC 3 cut(s) 172, 344, 577
TspDTI ATGAA 2 cut(s) 111, 953
TspRI CASTG 2 cut(s) 181, 463
Van91I CCANNNNNTGG 1 cut(s) 745
XapI RAATTY 2 cut(s) 13, 365
XmiI GTMKAC 1 cut(s) 393
XmnI GAANNNNTTC 1 cut(s) 935
XspI CTAG 2 cut(s) 191, 840
ZrmI AGTACT 1 cut(s) 935
Zsp2I ATGCAT 1 cut(s) 811
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.