Rh5BG129000

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
Physical Location & Seq
Reverse (-)
12512704 .. 12513015
312 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG129000.1

Sequence Viewer

Length: 312 bp
ATGAATTTTAGTCCTAGATTGATTTTGTGTAAGAGGCTCTCAAGCATTAAAAAATTGTGGAGATTCTTCACCTCATACTTGAAGAAATATCTGCTGCAGCCTACAGATTGCTCAAAGTCACAATGTTTGTTCCTCTCACATGGCATATGCTTTAAAGTGAGTATGAAACACCTATCATTGAAAGCTGTATTTGCCAAGAACCCTCCCTTAGGGGTAGGACTTGACTTTATGGTAGTTTCCAATACATGGTTAGAATTATGGCTGTGGATCCCATTTCGTACTATTAGATGGAGTACAGTTATACAAGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

103

Amino Acids

12.09

Weight (kDa)

10.17

Isoelectric Point (pI)

33.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 246
AclWI GGATC 2 cut(s) 262, 275
AcsI RAATTY 1 cut(s) 4
AfaI GTAC 2 cut(s) 280, 295
AfiI CCNNNNNNNGG 2 cut(s) 209, 246
AgsI TTSAA 2 cut(s) 82, 181
AluBI AGCT 1 cut(s) 185
AluI AGCT 1 cut(s) 185
AlwI GGATC 2 cut(s) 262, 275
ApeKI GCWGC 2 cut(s) 94, 97
ApoI RAATTY 1 cut(s) 4
AsuHPI GGTGA 1 cut(s) 61
AxyI CCTNAGG 1 cut(s) 208
BamHI GGATCC 1 cut(s) 267
BbvI GCAGC 2 cut(s) 81, 109
BccI CCATC 1 cut(s) 282
BfaI CTAG 2 cut(s) 15, 310
BfmI CTRYAG 2 cut(s) 95, 102
BisI GCNGC 2 cut(s) 95, 98
BlsI GCNGC 2 cut(s) 96, 99
BmiI GGNNCC 1 cut(s) 269
BpuEI CTTGAG 1 cut(s) 25
Bsc4I CCNNNNNNNGG 2 cut(s) 209, 246
Bse21I CCTNAGG 1 cut(s) 208
BseLI CCNNNNNNNGG 2 cut(s) 209, 246
BseXI GCAGC 2 cut(s) 81, 109
BslI CCNNNNNNNGG 2 cut(s) 209, 246
Bsp143I GATC 1 cut(s) 267
BspLI GGNNCC 1 cut(s) 269
BspMAI CTGCAG 1 cut(s) 99
BspPI GGATC 2 cut(s) 262, 275
BssMI GATC 1 cut(s) 267
Bst4CI ACNGT 1 cut(s) 298
BstDEI CTNAG 1 cut(s) 208
BstENI CCTNNNNNAGG 1 cut(s) 207
BstKTI GATC 1 cut(s) 270
BstMBI GATC 1 cut(s) 267
BstMWI GCNNNNNNNGC 1 cut(s) 191
BstSFI CTRYAG 2 cut(s) 95, 102
BstV1I GCAGC 2 cut(s) 81, 109
BstX2I RGATCY 1 cut(s) 267
BstYI RGATCY 1 cut(s) 267
Bsu36I CCTNAGG 1 cut(s) 208
Csp6I GTAC 2 cut(s) 279, 294
CviAII CATG 2 cut(s) 140, 246
CviJI RGCY 5 cut(s) 37, 100, 185, 262, 309
CviKI_1 RGCY 5 cut(s) 37, 100, 185, 262, 309
CviQI GTAC 2 cut(s) 279, 294
DdeI CTNAG 1 cut(s) 208
DpnI GATC 1 cut(s) 269
DpnII GATC 1 cut(s) 267
DraI TTTAAA 1 cut(s) 154
Eco81I CCTNAGG 1 cut(s) 208
EcoNI CCTNNNNNAGG 1 cut(s) 207
FaeI CATG 2 cut(s) 143, 249
FaiI YATR 9 cut(s) 76, 141, 146, 148, 164, 230, 247, 259, 302
FatI CATG 2 cut(s) 139, 245
FauNDI CATATG 1 cut(s) 146
Fnu4HI GCNGC 2 cut(s) 95, 98
Fsp4HI GCNGC 2 cut(s) 95, 98
FspBI CTAG 2 cut(s) 15, 310
GluI GCNGC 2 cut(s) 95, 98
Hin1II CATG 2 cut(s) 143, 249
HinfI GANTC 1 cut(s) 63
HphI GGTGA 1 cut(s) 61
HpyCH4III ACNGT 1 cut(s) 298
HpyCH4V TGCA 1 cut(s) 97
HpyF10VI GCNNNNNNNGC 1 cut(s) 191
HpyF3I CTNAG 1 cut(s) 208
Hsp92II CATG 2 cut(s) 143, 249
Kzo9I GATC 1 cut(s) 267
Lsp1109I GCAGC 2 cut(s) 81, 109
MaeI CTAG 2 cut(s) 15, 310
MaeIII GTNAC 1 cut(s) 117
MalI GATC 1 cut(s) 269
MboI GATC 1 cut(s) 267
MboII GAAGA 2 cut(s) 58, 94
MflI RGATCY 1 cut(s) 267
MluCI AATT 3 cut(s) 4, 53, 254
MnlI CCTC 4 cut(s) 27, 82, 143, 213
MseI TTAA 2 cut(s) 48, 153
MwoI GCNNNNNNNGC 1 cut(s) 191
NdeI CATATG 1 cut(s) 146
NdeII GATC 1 cut(s) 267
NlaIII CATG 2 cut(s) 143, 249
NlaIV GGNNCC 1 cut(s) 269
NmuCI GTSAC 1 cut(s) 117
PfeI GAWTC 1 cut(s) 63
PflMI CCANNNNNTGG 1 cut(s) 246
PkrI GCNGC 2 cut(s) 96, 99
PspN4I GGNNCC 1 cut(s) 269
PstI CTGCAG 1 cut(s) 99
PsuI RGATCY 1 cut(s) 267
RsaI GTAC 2 cut(s) 280, 295
RsaNI GTAC 2 cut(s) 279, 294
SaqAI TTAA 2 cut(s) 48, 153
SatI GCNGC 2 cut(s) 95, 98
Sau3AI GATC 1 cut(s) 267
SetI ASST 3 cut(s) 74, 174, 187
SfcI CTRYAG 2 cut(s) 95, 102
SgeI CNNG 7 cut(s) 27, 54, 91, 152, 208, 233, 258
SmlI CTYRAG 1 cut(s) 40
SmoI CTYRAG 1 cut(s) 40
Sse9I AATT 3 cut(s) 4, 53, 254
SspMI CTAG 2 cut(s) 15, 310
TaaI ACNGT 1 cut(s) 298
TasI AATT 3 cut(s) 4, 53, 254
TatI WGTACW 1 cut(s) 293
TfiI GAWTC 1 cut(s) 63
Tru1I TTAA 2 cut(s) 48, 153
Tru9I TTAA 2 cut(s) 48, 153
TseFI GTSAC 1 cut(s) 117
TseI GCWGC 2 cut(s) 94, 97
Tsp45I GTSAC 1 cut(s) 117
TspDTI ATGAA 2 cut(s) 17, 179
Van91I CCANNNNNTGG 1 cut(s) 246
XagI CCTNNNNNAGG 1 cut(s) 207
XapI RAATTY 1 cut(s) 4
XspI CTAG 2 cut(s) 15, 310
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.