AT4G20820

Belongs to the oxygen-dependent FAD-linked oxidoreductase family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
Physical Location & Seq
Forward (+)
11150049 .. 11152003
1955 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G20820.1

Sequence Viewer

Length: 1599 bp
ATGAAATTCCAAAGCTTCTTTAGCTCTGTTCTGATCTTCTTCACTACTAGTACTTTACTTCTATCAATTCCTCATCCGGTTTCAGCTAACCGGTCTAATCAATCCAGTTTCCTCCAATGTCTATCTCTCCAGTTAAACGACTCCAACATCGTCTCAAAAGTCATACACACACCAAACGACACTTCTTTCTCCTCAGTCTTAGCTTCATCAATACAAAATCAAAGATTCTCTGCTCCTGATGTACCTAAACCGGTTTTAATCCTAACTCCGGTTCAACCTTCTGATGTTCAATCAGCGGTTAAATGCGCACGCCGGTTCGGTATCCACATCAGAACCCGAAGCGGAGGACACGACTACGAAGGCCTCTCTTACGTTACACACAAACCCTTCGTAATCCTCGATTTAAGAAACCTCCGGTCTATCACAGTTGACGTCGATAACCGGTCGGTTTGGGTCCAAACCGGAGCCACGATCGGTGAACTATATTACGAAATCGGTAAAAAGAATCGTACTTTAGCGTTTCCCGCCGGAGTTTGCCCCACCGTCGGCGTCGGAGGACATTTTAGCGGCGGAGGATACGGTACTTTACTGAGAAAACACGGTTTAGCAGCTGATCACGTGATAGACGCACGTGTTGTCGACGCAAGAGGAAGGATTCTTGAGAGACGAGAGATGGGTGAAGATTTCTTCTGGGCGATTCGTGGAGGTGGTGGATCAAGCTTTTGCGTTGTTCTTTCATGGAAGATCGGTTTAATCAATGTTCCATCAACAGTAACTGTCTTCAACGTCACGAAATTCTCAGAACAGAGTGCTTTAAAGATCATTCATCGTTGGCAATTCGTGGCTGATAAAGTCTCTGATGATTTATTCATAAGAGTTATGTTGCAGAGATACAAGAACATGGTTCGAGCTTCGTTTCCGGGTTTGTATCTTGGTTCGGTTAAGAATCTGTTGAAAATGGTAAACAAAGAATTTCCTGAATTGGGTTTGGAGGAAGATGATTGTACAGAGATGAGTTGGATTGAGTCAGTAATTTGGTTTGCTGAGTTAGGAGAAGAACCAATCAATGTTCTTACTAAACGTACACGAGCATCGTTGGCTTTCAAGGCTAAATCTGATTTTGTTCAAGAACCGATGCCTAAAACCGCGATTTCGAAGCTTTGGAGACGGTTGCAAGAACCGGAAGCAGAGCATGCTCAGCTAATTTTCACTCCATTTGGTGGTAAAATGAGTGAGATTGCAGATTACGAAACACCATTTCCGCATAGGAAGGGGAATATATATGAGATTCAGTACTTGAATTACTGGAGAGGAGACGTGAAAGAGAAGTATATGAGATGGGTGGAGAGAGTTTACGATGATATGAGTGAGTTTGTGGCGAAGTCTCCGAGAGGAGCTTATATAAATCTGAGAGATCTTGATTTGGGAATGTATGTTGGAGTTAAGAGGAGTAAGTACGAGGAAGGGAAGAGTTGGGGAGTGAAGTATTTTAAGAATAATTTTGAGAGATTGGTGAGAGTTAAGACAAGTGTTGATCCTTCTGATTTCTTCTGTGATGAACAGAGTATTCCTCCTTTTACGTTTGTTGAAGTTATTTGA

Protein Analysis

532

Amino Acids

60.39

Weight (kDa)

8.96

Isoelectric Point (pI)

51.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAD_binding_4 PF01565 86 - 221 2e-28 FAD binding domain
BBE PF08031 466 - 524 5.5e-18 Berberine and berberine like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 435
Acc16I TGCGCA 1 cut(s) 307
AccB7I CCANNNNNTGG 1 cut(s) 1220
AccI GTMKAC 1 cut(s) 639
AccII CGCG 1 cut(s) 1148
AciI CCGC 7 cut(s) 296, 342, 525, 567, 570, 1146, 1262
AclWI GGATC 2 cut(s) 721, 1529
AcsI RAATTY 3 cut(s) 5, 794, 971
AcvI CACGTG 2 cut(s) 619, 632
AcyI GRCGYC 2 cut(s) 432, 549
AfaI GTAC 8 cut(s) 52, 243, 511, 583, 1006, 1084, 1295, 1457
AfiI CCNNNNNNNGG 4 cut(s) 268, 545, 983, 1220
AflIII ACRYGT 1 cut(s) 631
AgeI ACCGGT 3 cut(s) 90, 250, 441
AgsI TTSAA 8 cut(s) 275, 290, 784, 955, 1105, 1127, 1300, 1589
AhlI ACTAGT 1 cut(s) 47
AjiI CACGTC 1 cut(s) 1318
AjuI GAANNNNNNNTTGG 2 cut(s) 166, 198
Alw26I GTCTC 6 cut(s) 157, 658, 859, 1159, 1308, 1389
AlwI GGATC 2 cut(s) 721, 1529
AlwNI CAGNNNCTG 1 cut(s) 776
AoxI GGCC 1 cut(s) 361
ApeKI GCWGC 1 cut(s) 608
ApoI RAATTY 3 cut(s) 5, 794, 971
AsiGI ACCGGT 3 cut(s) 90, 250, 441
AspLEI GCGC 1 cut(s) 308
AspS9I GGNCC 1 cut(s) 454
AsuC2I CCSGG 1 cut(s) 921
AsuHPI GGTGA 3 cut(s) 488, 689, 1525
AsuII TTCGAA 1 cut(s) 1154
AvaII GGWCC 1 cut(s) 454
BauI CACGAG 1 cut(s) 1086
BbrPI CACGTG 2 cut(s) 619, 632
BbsI GAAGAC 1 cut(s) 772
BbvI GCAGC 1 cut(s) 620
BccI CCATC 3 cut(s) 667, 772, 1332
BciVI GTATCC 2 cut(s) 332, 569
BclI TGATCA 1 cut(s) 613
BcnI CCSGG 1 cut(s) 921
BcoDI GTCTC 6 cut(s) 157, 658, 859, 1159, 1308, 1389
BcuI ACTAGT 1 cut(s) 47
BfaI CTAG 1 cut(s) 48
BfuI GTATCC 2 cut(s) 332, 569
BglII AGATCT 1 cut(s) 1414
BisI GCNGC 2 cut(s) 568, 609
BlpI GCTNAGC 1 cut(s) 1197
BlsI GCNGC 2 cut(s) 569, 610
BmcAI AGTACT 2 cut(s) 52, 1295
Bme1390I CCNGG 1 cut(s) 921
Bme18I GGWCC 1 cut(s) 454
BmgBI CACGTC 1 cut(s) 1318
BmgT120I GGNCC 1 cut(s) 454
BmiI GGNNCC 2 cut(s) 455, 466
BmrFI CCNGG 1 cut(s) 921
BmsI GCATC 2 cut(s) 1100, 1125
BpiI GAAGAC 1 cut(s) 772
BplI GAGNNNNNCTC 2 cut(s) 1555, 1587
BpmI CTGGAG 2 cut(s) 113, 1327
Bpu1102I GCTNAGC 1 cut(s) 1197
Bpu14I TTCGAA 1 cut(s) 1154
BpuEI CTTGAG 1 cut(s) 680
BpuMI CCSGG 1 cut(s) 921
BsaAI YACGTR 2 cut(s) 619, 632
BsaHI GRCGYC 2 cut(s) 432, 549
BsaWI WCCGGW 8 cut(s) 76, 90, 250, 268, 414, 441, 461, 1180
Bsc4I CCNNNNNNNGG 4 cut(s) 268, 545, 983, 1220
Bse118I RCCGGY 4 cut(s) 90, 250, 312, 441
Bse1I ACTGG 3 cut(s) 105, 130, 1310
BseGI GGATG 1 cut(s) 73
BseLI CCNNNNNNNGG 4 cut(s) 268, 545, 983, 1220
BseMII CTCAG 6 cut(s) 207, 581, 813, 1035, 1211, 1400
BseNI ACTGG 3 cut(s) 105, 130, 1310
BseRI GAGGAG 4 cut(s) 181, 1326, 1407, 1462
BseXI GCAGC 1 cut(s) 620
Bsh1236I CGCG 1 cut(s) 1148
Bsh1285I CGRYCG 2 cut(s) 446, 474
BshFI GGCC 1 cut(s) 363
BshTI ACCGGT 3 cut(s) 90, 250, 441
BsiEI CGRYCG 2 cut(s) 446, 474
BslI CCNNNNNNNGG 4 cut(s) 268, 545, 983, 1220
BsmAI GTCTC 6 cut(s) 157, 658, 859, 1159, 1308, 1389
BsmBI CGTCTC 4 cut(s) 157, 658, 1159, 1308
BsnI GGCC 1 cut(s) 363
Bsp119I TTCGAA 1 cut(s) 1154
Bsp1407I TGTACA 1 cut(s) 1004
Bsp143I GATC 8 cut(s) 33, 471, 613, 713, 744, 819, 1414, 1534
Bsp1720I GCTNAGC 1 cut(s) 1197
BspACI CCGC 7 cut(s) 296, 342, 525, 567, 570, 1146, 1262
BspANI GGCC 1 cut(s) 363
BspCNI CTCAG 6 cut(s) 206, 582, 812, 1036, 1210, 1401
BspFNI CGCG 1 cut(s) 1148
BspLI GGNNCC 2 cut(s) 455, 466
BspPI GGATC 2 cut(s) 721, 1529
BspT104I TTCGAA 1 cut(s) 1154
BsrFI RCCGGY 4 cut(s) 90, 250, 312, 441
BsrGI TGTACA 1 cut(s) 1004
BsrI ACTGG 3 cut(s) 105, 130, 1310
BssAI RCCGGY 4 cut(s) 90, 250, 312, 441
BssMI GATC 8 cut(s) 33, 471, 613, 713, 744, 819, 1414, 1534
BssNI GRCGYC 2 cut(s) 432, 549
BssSI CACGAG 1 cut(s) 1086
Bst2BI CACGAG 1 cut(s) 1086
Bst4CI ACNGT 7 cut(s) 427, 544, 581, 602, 772, 778, 1170
Bst6I CTCTTC 1 cut(s) 1463
BstACI GRCGYC 2 cut(s) 432, 549
BstAPI GCANNNNNTGC 1 cut(s) 1193
BstAUI TGTACA 1 cut(s) 1004
BstBAI YACGTR 2 cut(s) 619, 632
BstBI TTCGAA 1 cut(s) 1154
BstC8I GCNNGC 2 cut(s) 310, 1194
BstDEI CTNAG 7 cut(s) 193, 199, 590, 799, 1044, 1197, 1409
BstF5I GGATG 1 cut(s) 73
BstFNI CGCG 1 cut(s) 1148
BstHHI GCGC 1 cut(s) 308
BstKTI GATC 8 cut(s) 36, 474, 616, 716, 747, 822, 1417, 1537
BstMAI GTCTC 6 cut(s) 157, 658, 859, 1159, 1308, 1389
BstMBI GATC 8 cut(s) 33, 471, 613, 713, 744, 819, 1414, 1534
BstMCI CGRYCG 2 cut(s) 446, 474
BstMWI GCNNNNNNNGC 6 cut(s) 21, 524, 1097, 1106, 1193, 1198
BstNSI RCATGY 1 cut(s) 1196
BstSCI CCNGG 1 cut(s) 919
BstUI CGCG 1 cut(s) 1148
BstV1I GCAGC 1 cut(s) 620
BstV2I GAAGAC 1 cut(s) 772
BstX2I RGATCY 1 cut(s) 1414
BstYI RGATCY 1 cut(s) 1414
BsuI GTATCC 2 cut(s) 332, 569
BsuRI GGCC 1 cut(s) 363
BtrI CACGTC 1 cut(s) 1318
BtsCI GGATG 1 cut(s) 73
Cac8I GCNNGC 2 cut(s) 310, 1194
CaiI CAGNNNCTG 1 cut(s) 776
CfoI GCGC 1 cut(s) 308
Cfr10I RCCGGY 4 cut(s) 90, 250, 312, 441
Cfr13I GGNCC 1 cut(s) 454
CseI GACGC 3 cut(s) 538, 635, 650
Csp6I GTAC 8 cut(s) 51, 242, 510, 582, 1005, 1083, 1294, 1456
CspAI ACCGGT 3 cut(s) 90, 250, 441
CviAII CATG 3 cut(s) 738, 901, 1193
CviQI GTAC 8 cut(s) 51, 242, 510, 582, 1005, 1083, 1294, 1456
DdeI CTNAG 7 cut(s) 193, 199, 590, 799, 1044, 1197, 1409
DpnI GATC 8 cut(s) 35, 473, 615, 715, 746, 821, 1416, 1536
DpnII GATC 8 cut(s) 33, 471, 613, 713, 744, 819, 1414, 1534
DraI TTTAAA 1 cut(s) 816
Eam1104I CTCTTC 1 cut(s) 1463
EarI CTCTTC 1 cut(s) 1463
EciI GGCGGA 1 cut(s) 585
Eco147I AGGCCT 1 cut(s) 363
Eco47I GGWCC 1 cut(s) 454
Eco72I CACGTG 2 cut(s) 619, 632
Esp3I CGTCTC 4 cut(s) 157, 658, 1159, 1308
FaeI CATG 3 cut(s) 741, 904, 1196
FatI CATG 3 cut(s) 737, 900, 1192
FauI CCCGC 1 cut(s) 532
FbaI TGATCA 1 cut(s) 613
FblI GTMKAC 1 cut(s) 639
Fnu4HI GCNGC 2 cut(s) 568, 609
FokI GGATG 1 cut(s) 60
Fsp4HI GCNGC 2 cut(s) 568, 609
FspAI RTGCGCAY 1 cut(s) 307
FspBI CTAG 1 cut(s) 48
FspI TGCGCA 1 cut(s) 307
GlaI GCGC 1 cut(s) 307
GluI GCNGC 2 cut(s) 568, 609
GsuI CTGGAG 2 cut(s) 113, 1327
HaeIII GGCC 1 cut(s) 363
HgaI GACGC 3 cut(s) 538, 635, 650
HhaI GCGC 1 cut(s) 308
Hin1I GRCGYC 2 cut(s) 432, 549
Hin1II CATG 3 cut(s) 741, 904, 1196
Hin6I GCGC 1 cut(s) 306
HinP1I GCGC 1 cut(s) 306
HincII GTYRAC 2 cut(s) 430, 640
HindII GTYRAC 2 cut(s) 430, 640
HindIII AAGCTT 3 cut(s) 13, 718, 1157
HinfI GANTC 8 cut(s) 140, 225, 505, 655, 697, 946, 1025, 1288
HphI GGTGA 3 cut(s) 488, 689, 1525
Hpy166II GTNNAC 6 cut(s) 430, 479, 640, 964, 1085, 1354
Hpy188III TCNNGA 6 cut(s) 236, 659, 790, 977, 1127, 1418
Hpy8I GTNNAC 6 cut(s) 430, 479, 640, 964, 1085, 1354
Hpy99I CGWCG 4 cut(s) 437, 548, 554, 644
HpyAV CCTTC 7 cut(s) 288, 353, 397, 645, 1264, 1457, 1548
HpyCH4III ACNGT 7 cut(s) 427, 544, 581, 602, 772, 778, 1170
HpyCH4IV ACGT 8 cut(s) 372, 432, 618, 631, 786, 1081, 1317, 1580
HpyCH4V TGCA 3 cut(s) 886, 1174, 1241
HpyF10VI GCNNNNNNNGC 6 cut(s) 21, 524, 1097, 1106, 1193, 1198
HpyF3I CTNAG 7 cut(s) 193, 199, 590, 799, 1044, 1197, 1409
HpySE526I ACGT 8 cut(s) 372, 432, 618, 631, 786, 1081, 1317, 1580
Hsp92I GRCGYC 2 cut(s) 432, 549
Hsp92II CATG 3 cut(s) 741, 904, 1196
HspAI GCGC 1 cut(s) 306
Ksp22I TGATCA 1 cut(s) 613
Kzo9I GATC 8 cut(s) 33, 471, 613, 713, 744, 819, 1414, 1534
LmnI GCTCC 3 cut(s) 238, 464, 1394
Lsp1109I GCAGC 1 cut(s) 620
LweI GCATC 2 cut(s) 1100, 1125
MaeI CTAG 1 cut(s) 48
MaeII ACGT 8 cut(s) 372, 432, 618, 631, 786, 1081, 1317, 1580
MaeIII GTNAC 3 cut(s) 373, 772, 787
MalI GATC 8 cut(s) 35, 473, 615, 715, 746, 821, 1416, 1536
MboI GATC 8 cut(s) 33, 471, 613, 713, 744, 819, 1414, 1534
MflI RGATCY 1 cut(s) 1414
MlyI GAGTC 2 cut(s) 134, 1034
MmeI TCCRAC 4 cut(s) 168, 532, 998, 1417
MspA1I CMGCKG 2 cut(s) 296, 611
MspR9I CCNGG 1 cut(s) 921
MvnI CGCG 1 cut(s) 1148
MwoI GCNNNNNNNGC 6 cut(s) 21, 524, 1097, 1106, 1193, 1198
NciI CCSGG 1 cut(s) 921
NdeII GATC 8 cut(s) 33, 471, 613, 713, 744, 819, 1414, 1534
NlaIII CATG 3 cut(s) 741, 904, 1196
NlaIV GGNNCC 2 cut(s) 455, 466
NmuCI GTSAC 1 cut(s) 787
NsbI TGCGCA 1 cut(s) 307
NspI RCATGY 1 cut(s) 1196
NspV TTCGAA 1 cut(s) 1154
PaeI GCATGC 1 cut(s) 1196
PceI AGGCCT 1 cut(s) 363
PcsI WCGNNNNNNNCGW 1 cut(s) 396
PfeI GAWTC 6 cut(s) 225, 505, 655, 697, 946, 1288
PflMI CCANNNNNTGG 1 cut(s) 1220
PinAI ACCGGT 3 cut(s) 90, 250, 441
PkrI GCNGC 2 cut(s) 569, 610
Ple19I CGATCG 1 cut(s) 474
PleI GAGTC 2 cut(s) 134, 1033
PmaCI CACGTG 2 cut(s) 619, 632
PmlI CACGTG 2 cut(s) 619, 632
PpsI GAGTC 2 cut(s) 134, 1033
Ppu21I YACGTR 2 cut(s) 619, 632
PspCI CACGTG 2 cut(s) 619, 632
PspN4I GGNNCC 2 cut(s) 455, 466
PspPI GGNCC 1 cut(s) 454
PstNI CAGNNNCTG 1 cut(s) 776
PsuI RGATCY 1 cut(s) 1414
PvuI CGATCG 1 cut(s) 474
PvuII CAGCTG 1 cut(s) 611
RsaI GTAC 8 cut(s) 52, 243, 511, 583, 1006, 1084, 1295, 1457
RsaNI GTAC 8 cut(s) 51, 242, 510, 582, 1005, 1083, 1294, 1456
SalI GTCGAC 1 cut(s) 638
SatI GCNGC 2 cut(s) 568, 609
Sau3AI GATC 8 cut(s) 33, 471, 613, 713, 744, 819, 1414, 1534
Sau96I GGNCC 1 cut(s) 454
ScaI AGTACT 2 cut(s) 52, 1295
SchI GAGTC 2 cut(s) 134, 1034
ScrFI CCNGG 1 cut(s) 921
SfaNI GCATC 2 cut(s) 1100, 1125
SfuI TTCGAA 1 cut(s) 1154
SinI GGWCC 1 cut(s) 454
SmlI CTYRAG 1 cut(s) 659
SmoI CTYRAG 1 cut(s) 659
SpeI ACTAGT 1 cut(s) 47
SphI GCATGC 1 cut(s) 1196
SseBI AGGCCT 1 cut(s) 363
SsiI CCGC 7 cut(s) 296, 342, 525, 567, 570, 1146, 1262
SspMI CTAG 1 cut(s) 48
StuI AGGCCT 1 cut(s) 363
StyD4I CCNGG 1 cut(s) 919
TaaI ACNGT 7 cut(s) 427, 544, 581, 602, 772, 778, 1170
TaiI ACGT 8 cut(s) 375, 435, 621, 634, 789, 1084, 1320, 1583
TaqI TCGA 5 cut(s) 399, 435, 639, 907, 1154
TatI WGTACW 3 cut(s) 50, 1004, 1293
TauI GCSGC 1 cut(s) 570
TfiI GAWTC 6 cut(s) 225, 505, 655, 697, 946, 1288
TseFI GTSAC 1 cut(s) 787
TseI GCWGC 1 cut(s) 608
Tsp45I GTSAC 1 cut(s) 787
TspDTI ATGAA 6 cut(s) 17, 195, 726, 815, 859, 1572
Van91I CCANNNNNTGG 1 cut(s) 1220
VpaK11BI GGWCC 1 cut(s) 454
XapI RAATTY 3 cut(s) 5, 794, 971
XceI RCATGY 1 cut(s) 1196
XmiI GTMKAC 1 cut(s) 639
XspI CTAG 1 cut(s) 48
ZraI GACGTC 1 cut(s) 433
ZrmI AGTACT 2 cut(s) 52, 1295
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.