Prupe.4G097000_v2.0.a1

Belongs to the oxygen-dependent FAD-linked oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0000925
Physical Location & Seq
Reverse (-)
4874898 .. 4876487
1590 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G097000.1

Sequence Viewer

Length: 1590 bp
ATGGAGATCTCTTACGTAAAACTAGTTCCAGTCCTACTTTTCATCCTTCTCAATTCAGTTTGGTGCACAACATCAAACTCAATTTCTGAAAGCTTTCTTCAATGTTTTTCCTCCCACATACATTCTAACTCAAGCAGCAAAATTATTCTCACCAAACACAGTTCTGCTTATTCCTCAGTTTTGCAATCTTCCATACAGAATCTCAGATTCTTGAACACTTCAACACCAAAACCAGAAGCTATCATTACTCCTTTTAAACACTCTCATGTTCAAGCAGCTGTAATTTGTTCCAAGAAAGAGGGCATACAAATAAGAACCCGAAGCGGGGGGCATGACTACGAGGGCCTATCTTATGTATCGACAACTCCTTTCATCATGATTGATCTTTTCGAACTTCGGTCCATTGATATTGACATAGAGAATGAGATCGCTTGGGTAGAGTCTGGTGCTACTCTTGGGGAGTTGTATTACGCAATTGCACAAAAGAGTAAAGTCTATGGCTTTCCAGCAGGGACTTGTCCAACTATTGGTGTGGGGGGACATATTAGTGGAGGTGGATTTGGTTCCTTGTTCAGGAAGTATGGTCTGGCAGCTGACAATGTCCTTGATGCTAAGATTGTCGATGTTAATGGCAGAGTTCTTGACAGAAAATCCATGGGAGAAGAACTCTTTTGGGCTATTAGAGGAGGGGGAGGCTCAAGCTTTGGAGTCATTCTATCATGGAAACTTAGGTTGGTTCCGGTTCCTCCATCTGTAACAGGTTACATGGAATCAAAGACCATAGAACAAGGTGCAACCAAACTTGTTTCTAAATGGCAAGCAATAGCAGATAGGATTCCTGAAGGGAATTTCCTGCGTTTGGTTTTACAAGTTGAAAATGGTACAAACGGTGGAAAAACTATTCAAGTTGTATTCAATTTCTTGTTTCTCGAGACTTACAAGGAACTTCTTCCTTGGATGAAAGAAAACTTCCCAGAGTTAAATTTAGACCAGACCGCATTCACTGAAATGAGTTGGATTGAGTCTGTTCTATTTTTGGCTAACTTTCCAATAAATGAAACAGAAGTTCTGCTTCAGCGGACTCAACAATCTAGGAGCTTCTTTAAAGCAAAATCAGACTACGTGACAGAACCAATTTCAGAAGCTGGCTTGGAAGGTTTATATCAGAGAATGCTTCAGCTAGACACATCCATGTTGATACTGTCACCTTTTGGCGGAAGAATGAGTGAGATTTCCGAATCAGAAATTCCTTTCCCACATAGAAAAGGAAACTTATATGAAATCCAGTATTATGTCACTTGGGATGATGACAAAGAAACTAAGAAACATATTAGCTGGACAAGAATGGTGTATGGCTACATGGCAGCATATGTTTCCAAGTCCCCAAGAGCTGCCTATTTGAACTACAGGGATCTTGACTTGGGGACGGACAAGGATGCTAACACAAGCTATGCACAAGCAACCATTTGGGGTTTGAGCTACTTCAAGAATAACTTCAGGAGACTTGCTCAAGTGAAGACCTTAGTTGATCCTGGTAACTTCTTTAGAAATGAACAAAGCATCCCTGTGTTACGATCTGGGGAAAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
BBE FAD_binding_4

Protein Analysis

530

Amino Acids

59.43

Weight (kDa)

6.78

Isoelectric Point (pI)

43.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 527
AciI CCGC 4 cut(s) 324, 996, 1078, 1215
AclWI GGATC 2 cut(s) 1419, 1523
AcsI RAATTY 3 cut(s) 847, 982, 1245
AcuI CTGAAG 4 cut(s) 861, 1058, 1160, 1480
AfaI GTAC 1 cut(s) 883
AfiI CCNNNNNNNGG 6 cut(s) 324, 325, 527, 573, 859, 1214
AgsI TTSAA 9 cut(s) 101, 214, 222, 272, 875, 905, 916, 1402, 1486
AhlI ACTAGT 1 cut(s) 22
AjnI CCWGG 1 cut(s) 1531
AjuI GAANNNNNNNTTGG 2 cut(s) 716, 748
AloI GAACNNNNNNTCC 2 cut(s) 1545, 1577
Alw21I GWGCWC 1 cut(s) 68
Alw26I GTCTC 2 cut(s) 926, 1495
Alw44I GTGCAC 1 cut(s) 64
AlwI GGATC 2 cut(s) 1419, 1523
AlwNI CAGNNNCTG 1 cut(s) 1145
Ama87I CYCGRG 1 cut(s) 929
AoxI GGCC 1 cut(s) 343
ApaLI GTGCAC 1 cut(s) 64
ApeKI GCWGC 5 cut(s) 135, 275, 590, 1364, 1391
ApoI RAATTY 3 cut(s) 847, 982, 1245
Asp700I GAANNNNTTC 3 cut(s) 93, 948, 1493
AspS9I GGNCC 2 cut(s) 343, 399
AsuHPI GGTGA 2 cut(s) 142, 1197
AsuII TTCGAA 1 cut(s) 390
AvaI CYCGRG 1 cut(s) 929
AvaII GGWCC 1 cut(s) 399
BaeGI GKGCMC 1 cut(s) 68
BbsI GAAGAC 1 cut(s) 1523
Bbv12I GWGCWC 1 cut(s) 68
BbvI GCAGC 5 cut(s) 147, 287, 602, 1376, 1378
BccI CCATC 1 cut(s) 757
BciT130I CCWGG 1 cut(s) 1533
BcoDI GTCTC 2 cut(s) 926, 1495
BcuI ACTAGT 1 cut(s) 22
BfaI CTAG 3 cut(s) 23, 1092, 1181
BfmI CTRYAG 1 cut(s) 1405
BglII AGATCT 1 cut(s) 6
BisI GCNGC 5 cut(s) 136, 276, 591, 1365, 1392
BlsI GCNGC 5 cut(s) 137, 277, 592, 1366, 1393
Bme1390I CCNGG 1 cut(s) 1533
Bme18I GGWCC 1 cut(s) 399
BmeT110I CYCGRG 1 cut(s) 929
BmgT120I GGNCC 2 cut(s) 343, 399
BmiI GGNNCC 3 cut(s) 565, 738, 744
BmrFI CCNGG 1 cut(s) 1533
BmsI GCATC 3 cut(s) 598, 1426, 1569
BpiI GAAGAC 1 cut(s) 1523
BplI GAGNNNNNCTC 4 cut(s) 651, 683, 1492, 1524
Bpu14I TTCGAA 1 cut(s) 390
BpuEI CTTGAG 3 cut(s) 115, 682, 1494
BsaAI YACGTR 2 cut(s) 16, 1123
BsaJI CCNNGG 2 cut(s) 654, 953
BsaWI WCCGGW 1 cut(s) 739
Bsc4I CCNNNNNNNGG 6 cut(s) 324, 325, 527, 573, 859, 1214
Bse1I ACTGG 2 cut(s) 29, 1285
BseBI CCWGG 1 cut(s) 1533
BseDI CCNNGG 2 cut(s) 654, 953
BseGI GGATG 6 cut(s) 42, 963, 1187, 1309, 1441, 1560
BseLI CCNNNNNNNGG 6 cut(s) 324, 325, 527, 573, 859, 1214
BseMII CTCAG 2 cut(s) 189, 217
BseNI ACTGG 2 cut(s) 29, 1285
BseRI GAGGAG 1 cut(s) 699
BseSI GKGCMC 1 cut(s) 68
BseXI GCAGC 5 cut(s) 147, 287, 602, 1376, 1378
BshFI GGCC 1 cut(s) 345
BsiHKAI GWGCWC 1 cut(s) 68
BsiHKCI CYCGRG 1 cut(s) 929
BsiSI CCGG 1 cut(s) 740
BslFI GGGAC 4 cut(s) 526, 552, 1366, 1438
BslI CCNNNNNNNGG 6 cut(s) 324, 325, 527, 573, 859, 1214
BsmAI GTCTC 2 cut(s) 926, 1495
BsmFI GGGAC 4 cut(s) 526, 552, 1366, 1438
BsmI GAATGC 2 cut(s) 998, 1176
BsnI GGCC 1 cut(s) 345
BsoBI CYCGRG 1 cut(s) 929
Bsp119I TTCGAA 1 cut(s) 390
Bsp1286I GDGCHC 1 cut(s) 68
Bsp143I GATC 6 cut(s) 6, 382, 426, 1411, 1528, 1574
Bsp19I CCATGG 1 cut(s) 654
BspACI CCGC 4 cut(s) 324, 996, 1078, 1215
BspANI GGCC 1 cut(s) 345
BspCNI CTCAG 2 cut(s) 188, 216
BspHI TCATGA 1 cut(s) 375
BspLI GGNNCC 3 cut(s) 565, 738, 744
BspPI GGATC 2 cut(s) 1419, 1523
BspT104I TTCGAA 1 cut(s) 390
BsrI ACTGG 2 cut(s) 29, 1285
BssECI CCNNGG 2 cut(s) 654, 953
BssMI GATC 6 cut(s) 6, 382, 426, 1411, 1528, 1574
BssT1I CCWWGG 2 cut(s) 654, 953
Bst2UI CCWGG 1 cut(s) 1533
Bst4CI ACNGT 3 cut(s) 161, 890, 1203
BstBAI YACGTR 2 cut(s) 16, 1123
BstBI TTCGAA 1 cut(s) 390
BstC8I GCNNGC 2 cut(s) 819, 1147
BstDEI CTNAG 6 cut(s) 175, 203, 612, 728, 1320, 1522
BstDSI CCRYGG 1 cut(s) 654
BstENI CCTNNNNNAGG 1 cut(s) 571
BstF5I GGATG 6 cut(s) 42, 963, 1187, 1309, 1441, 1560
BstKTI GATC 6 cut(s) 9, 385, 429, 1414, 1531, 1577
BstMAI GTCTC 2 cut(s) 926, 1495
BstMBI GATC 6 cut(s) 6, 382, 426, 1411, 1528, 1574
BstNI CCWGG 1 cut(s) 1533
BstSCI CCNGG 1 cut(s) 1531
BstSFI CTRYAG 1 cut(s) 1405
BstSLI GKGCMC 1 cut(s) 68
BstSNI TACGTA 1 cut(s) 16
BstV1I GCAGC 5 cut(s) 147, 287, 602, 1376, 1378
BstV2I GAAGAC 1 cut(s) 1523
BstX2I RGATCY 2 cut(s) 6, 1411
BstYI RGATCY 2 cut(s) 6, 1411
BsuRI GGCC 1 cut(s) 345
BtgI CCRYGG 1 cut(s) 654
BtsCI GGATG 6 cut(s) 42, 963, 1187, 1309, 1441, 1560
BtsIMutI CAGTG 1 cut(s) 1002
Cac8I GCNNGC 2 cut(s) 819, 1147
CaiI CAGNNNCTG 1 cut(s) 1145
CciI TCATGA 1 cut(s) 375
Cfr13I GGNCC 2 cut(s) 343, 399
Csp6I GTAC 1 cut(s) 882
CviAII CATG 8 cut(s) 266, 332, 376, 655, 720, 766, 1192, 1360
CviQI GTAC 1 cut(s) 882
DdeI CTNAG 6 cut(s) 175, 203, 612, 728, 1320, 1522
DpnI GATC 6 cut(s) 8, 384, 428, 1413, 1530, 1576
DpnII GATC 6 cut(s) 6, 382, 426, 1411, 1528, 1574
DraI TTTAAA 2 cut(s) 256, 1105
EciI GGCGGA 1 cut(s) 1230
Eco105I TACGTA 1 cut(s) 16
Eco130I CCWWGG 2 cut(s) 654, 953
Eco47I GGWCC 1 cut(s) 399
Eco57I CTGAAG 4 cut(s) 861, 1058, 1160, 1480
Eco88I CYCGRG 1 cut(s) 929
EcoNI CCTNNNNNAGG 1 cut(s) 571
EcoO109I RGGNCCY 1 cut(s) 343
EcoRII CCWGG 1 cut(s) 1531
EcoT14I CCWWGG 2 cut(s) 654, 953
ErhI CCWWGG 2 cut(s) 654, 953
FaeI CATG 8 cut(s) 269, 335, 379, 658, 723, 769, 1195, 1363
FalI AAGNNNNNCTT 4 cut(s) 1056, 1088, 1478, 1510
FaqI GGGAC 4 cut(s) 526, 552, 1366, 1438
FatI CATG 8 cut(s) 265, 331, 375, 654, 719, 765, 1191, 1359
FauI CCCGC 1 cut(s) 317
FauNDI CATATG 1 cut(s) 1369
Fnu4HI GCNGC 5 cut(s) 136, 276, 591, 1365, 1392
FokI GGATG 6 cut(s) 29, 970, 1174, 1316, 1448, 1547
Fsp4HI GCNGC 5 cut(s) 136, 276, 591, 1365, 1392
FspBI CTAG 3 cut(s) 23, 1092, 1181
GluI GCNGC 5 cut(s) 136, 276, 591, 1365, 1392
HaeIII GGCC 1 cut(s) 345
HapII CCGG 1 cut(s) 740
Hin1II CATG 8 cut(s) 269, 335, 379, 658, 723, 769, 1195, 1363
HindIII AAGCTT 2 cut(s) 91, 700
HinfI GANTC 9 cut(s) 199, 207, 440, 708, 770, 835, 1022, 1081, 1238
HpaII CCGG 1 cut(s) 740
HphI GGTGA 2 cut(s) 142, 1197
Hpy166II GTNNAC 1 cut(s) 66
Hpy188I TCNGA 7 cut(s) 88, 206, 1117, 1141, 1167, 1237, 1243
Hpy8I GTNNAC 1 cut(s) 66
HpyAV CCTTC 3 cut(s) 56, 836, 1148
HpyCH4III ACNGT 3 cut(s) 161, 890, 1203
HpyCH4IV ACGT 2 cut(s) 15, 1122
HpyCH4V TGCA 5 cut(s) 66, 184, 479, 794, 1454
HpyF3I CTNAG 6 cut(s) 175, 203, 612, 728, 1320, 1522
HpySE526I ACGT 2 cut(s) 15, 1122
Hsp92II CATG 8 cut(s) 269, 335, 379, 658, 723, 769, 1195, 1363
Kzo9I GATC 6 cut(s) 6, 382, 426, 1411, 1528, 1574
LmnI GCTCC 1 cut(s) 1095
Lsp1109I GCAGC 5 cut(s) 147, 287, 602, 1376, 1378
LweI GCATC 3 cut(s) 598, 1426, 1569
MaeI CTAG 3 cut(s) 23, 1092, 1181
MaeII ACGT 2 cut(s) 15, 1122
MaeIII GTNAC 7 cut(s) 754, 761, 1123, 1203, 1294, 1535, 1569
MalI GATC 6 cut(s) 8, 384, 428, 1413, 1530, 1576
MboI GATC 6 cut(s) 6, 382, 426, 1411, 1528, 1574
MboII GAAGA 6 cut(s) 89, 180, 674, 941, 1230, 1528
MfeI CAATTG 1 cut(s) 474
MflI RGATCY 2 cut(s) 6, 1411
MhlI GDGCHC 1 cut(s) 68
MlyI GAGTC 4 cut(s) 449, 717, 1031, 1075
MmeI TCCRAC 2 cut(s) 545, 995
MnlI CCTC 9 cut(s) 121, 184, 292, 334, 545, 677, 680, 686, 756
MroXI GAANNNNTTC 3 cut(s) 93, 948, 1493
MseI TTAA 4 cut(s) 255, 627, 980, 1104
MslI CAYNNNNRTG 5 cut(s) 264, 546, 1007, 1190, 1565
MspA1I CMGCKG 3 cut(s) 278, 593, 1078
MspI CCGG 1 cut(s) 740
MspR9I CCNGG 1 cut(s) 1533
MunI CAATTG 1 cut(s) 474
Mva1269I GAATGC 2 cut(s) 998, 1176
MvaI CCWGG 1 cut(s) 1533
NcoI CCATGG 1 cut(s) 654
NdeI CATATG 1 cut(s) 1369
NdeII GATC 6 cut(s) 6, 382, 426, 1411, 1528, 1574
NlaIII CATG 8 cut(s) 269, 335, 379, 658, 723, 769, 1195, 1363
NlaIV GGNNCC 3 cut(s) 565, 738, 744
NmuCI GTSAC 3 cut(s) 1123, 1203, 1294
NspV TTCGAA 1 cut(s) 390
PaeR7I CTCGAG 1 cut(s) 929
PagI TCATGA 1 cut(s) 375
PctI GAATGC 2 cut(s) 998, 1176
PdmI GAANNNNTTC 3 cut(s) 93, 948, 1493
PfeI GAWTC 5 cut(s) 199, 207, 770, 835, 1238
PflFI GACNNNGTC 1 cut(s) 599
PflMI CCANNNNNTGG 1 cut(s) 527
PkrI GCNGC 5 cut(s) 137, 277, 592, 1366, 1393
PleI GAGTC 4 cut(s) 448, 716, 1030, 1075
PpsI GAGTC 4 cut(s) 448, 716, 1030, 1075
Ppu21I YACGTR 2 cut(s) 16, 1123
Psp6I CCWGG 1 cut(s) 1531
PspGI CCWGG 1 cut(s) 1531
PspN4I GGNNCC 3 cut(s) 565, 738, 744
PspPI GGNCC 2 cut(s) 343, 399
PsrI GAACNNNNNNTAC 2 cut(s) 9, 41
PstNI CAGNNNCTG 1 cut(s) 1145
PsuI RGATCY 2 cut(s) 6, 1411
PsyI GACNNNGTC 1 cut(s) 599
PvuII CAGCTG 2 cut(s) 278, 593
RsaI GTAC 1 cut(s) 883
RsaNI GTAC 1 cut(s) 882
RseI CAYNNNNRTG 5 cut(s) 264, 546, 1007, 1190, 1565
SaqAI TTAA 4 cut(s) 255, 627, 980, 1104
SatI GCNGC 5 cut(s) 136, 276, 591, 1365, 1392
Sau3AI GATC 6 cut(s) 6, 382, 426, 1411, 1528, 1574
Sau96I GGNCC 2 cut(s) 343, 399
SchI GAGTC 4 cut(s) 449, 717, 1031, 1075
ScrFI CCNGG 1 cut(s) 1533
SduI GDGCHC 1 cut(s) 68
SfaNI GCATC 3 cut(s) 598, 1426, 1569
SfcI CTRYAG 1 cut(s) 1405
Sfr274I CTCGAG 1 cut(s) 929
SfuI TTCGAA 1 cut(s) 390
SinI GGWCC 1 cut(s) 399
SlaI CTCGAG 1 cut(s) 929
SmiMI CAYNNNNRTG 5 cut(s) 264, 546, 1007, 1190, 1565
SmlI CTYRAG 4 cut(s) 130, 697, 929, 1509
SmoI CTYRAG 4 cut(s) 130, 697, 929, 1509
SnaBI TACGTA 1 cut(s) 16
SpeI ACTAGT 1 cut(s) 22
SsiI CCGC 4 cut(s) 324, 996, 1078, 1215
SspMI CTAG 3 cut(s) 23, 1092, 1181
StyD4I CCNGG 1 cut(s) 1531
StyI CCWWGG 2 cut(s) 654, 953
TaaI ACNGT 3 cut(s) 161, 890, 1203
TaiI ACGT 2 cut(s) 18, 1125
TaqI TCGA 4 cut(s) 359, 390, 621, 930
TaqII GACCGA 1 cut(s) 387
TfiI GAWTC 5 cut(s) 199, 207, 770, 835, 1238
Tru1I TTAA 4 cut(s) 255, 627, 980, 1104
Tru9I TTAA 4 cut(s) 255, 627, 980, 1104
TscAI CASTG 1 cut(s) 1009
TseFI GTSAC 3 cut(s) 1123, 1203, 1294
TseI GCWGC 5 cut(s) 135, 275, 590, 1364, 1391
Tsp45I GTSAC 3 cut(s) 1123, 1203, 1294
TspDTI ATGAA 6 cut(s) 31, 361, 974, 1071, 1293, 1566
TspGWI ACGGA 1 cut(s) 1442
TspRI CASTG 1 cut(s) 1009
Tth111I GACNNNGTC 1 cut(s) 599
Van91I CCANNNNNTGG 1 cut(s) 527
VneI GTGCAC 1 cut(s) 64
VpaK11BI GGWCC 1 cut(s) 399
XagI CCTNNNNNAGG 1 cut(s) 571
XapI RAATTY 3 cut(s) 847, 982, 1245
XhoI CTCGAG 1 cut(s) 929
XmnI GAANNNNTTC 3 cut(s) 93, 948, 1493
XspI CTAG 3 cut(s) 23, 1092, 1181
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.