Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003592.1

Orthogroup ID

OG0000925

Physical Location & Seq

Genomic Coordinates Reverse (-)

25833 .. 26852

Gene Structure 1020 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003592.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

ctgaacaattccacacctaaaccagaggccatcattactccttttgatgaatctcaggttcaagcagctgtaatttgctccaagaaaagtggcatacaaataagaatccgaagcgggggtcatgattattacgagggcctatcttatgtgtctagagctcctttcatcatcattgaccttttcaatctccgttccatcgatgttgatataacgaatgagagtgcttgggtcaaatcaggcgctactcttggagagttgtattacaacattgcacagaagagtaaagtctatgcctttccagcagggacttgtcccaccgttggtgctgggggacacatcagtggaggtggagttggtaccatattcagaaaatatggtctagcatctgacaatgtcattgatgctagaattgtagatgttaatggcagaattctagacagaaagtccatgggagaagagctcttttgggctatcagaggaggaggatcaagctttggagtcattctagcatggaaacttagactggttcctgttcccccaactgtaacagtttgcgacattacaaagacaaaagaacaaggtgcaaccaaatttcttttgaaatggcaaaacattggtgaagaccttttcctacattcagttgtaggaagtagtgacaacagtattacagttgaattcggttccttgtttctcgggcgggtcgacaaagctgtccaggtaatacaggaaaacttcccagagttgagtttagagagcagccattgcagtgagatgagttggattcagtctgttttggactctgctggctactcgatccacgaatccttggagattttgctgaagcgccggcaattcagctacttcttcaaagcaaaatcagactttgtgactgaacgcatctcagaagctggcttggaaggcttatggcacagctctatcggtgctataataaggagaaactcaattttgtctccagatataagatccagtgtagaaatagttgcctgcaaatgtcactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

BBE FAD_binding_4

Protein Analysis

339

Amino Acids

37.17

Weight (kDa)

6.73

Isoelectric Point (pI)

46.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000925)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20820 AT5G44360 AT5G44360 AT5G44410 AT5G44440 AT5G44440
fragaria_vesca	FvH4_3g10860 FvH4_3g10930 FvH4_3g10940 FvH4_3g10940 FvH4_3g10941
malus_domestica	MD05G1267700.v1.1 MD05G1267800.v1.1 MD05G1267900.v1.1 MD05G1268000.v1.1 MD05G1268100.v1.1 MD05G1268200.v1.1 MD10G1244300.v1.1
prunus_persica	Prupe.4G092500_v2.0.a1 Prupe.4G096500_v2.0.a1 Prupe.4G096600_v2.0.a1 Prupe.4G096700_v2.0.a1 Prupe.4G096900_v2.0.a1 Prupe.4G097000_v2.0.a1 Prupe.4G097100_v2.0.a1 Prupe.4G097200_v2.0.a1 Prupe.4G097300_v2.0.a1 Prupe.4G097500_v2.0.a1 Prupe.4G097700_v2.0.a1 Prupe.4G097800_v2.0.a1 Prupe.4G098200_v2.0.a1
pyrus_communis	pycom05g25090 pycom05g25120 pycom10g20430 pycom10g20480 pycom10g20490
rosa_chinensis	RchiOBHm_Chr4g0431071 RchiOBHm_Chr4g0431081 RchiOBHm_Chr5g0017651 RchiOBHm_Chr5g0017661 RchiOBHm_Chr5g0017681 RchiOBHm_Chr5g0017691
rosa_laevigata	RLG00000006927 RLG00000032303 RLG00000032304 RLG00000032305
rosa_multiflora	Rmu_sc0000346.1_g000001 Rmu_sc0003415.1_g000006 Rmu_sc0003415.1_g000009 Rmu_sc0003592.1_g000009 Rmu_sc0005192.1_g000001 Rmu_sc0009555.1_g000002 Rmu_sc0010203.1_g000009
rosa_roxburghii	Rroxscaffold_1G00059800 Rroxscaffold_1G00059820
rosa_rugosa	Rorug05G0037300 Rorug05G0037300 Rorug05G0037300 Rorug05G0037400 Rorug05G0038600
rosa_samantha	Rh5BG129000
rosa_wichuraiana	Rw5G011340 Rw5G011350 Rw5G011430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	710
Acc65I	GGTACC	1 cut(s)	356
AccB1I	GGYRCC	1 cut(s)	356
AccI	GTMKAC	1 cut(s)	702
AciI	CCGC	2 cut(s)	114, 697
AclWI	GGATC	3 cut(s)	493, 808, 978
AcsI	RAATTY	3 cut(s)	429, 590, 674
AcuI	CTGAAG	1 cut(s)	860
AfaI	GTAC	1 cut(s)	358
AfiI	CCNNNNNNNGG	2 cut(s)	115, 320
AgsI	TTSAA	5 cut(s)	62, 184, 601, 674, 868
AhdI	GACNNNNNGTC	1 cut(s)	442
AjnI	CCWGG	1 cut(s)	714
AleI	CACNNNNGTG	1 cut(s)	339
AluBI	AGCT	8 cut(s)	68, 158, 460, 492, 710, 858, 908, 933
AluI	AGCT	8 cut(s)	68, 158, 460, 492, 710, 858, 908, 933
Alw21I	GWGCWC	2 cut(s)	160, 462
Alw26I	GTCTC	1 cut(s)	975
AlwI	GGATC	3 cut(s)	493, 808, 978
AlwNI	CAGNNNCTG	1 cut(s)	908
Ama87I	CYCGRG	1 cut(s)	692
AoxI	GGCC	2 cut(s)	27, 136
ApeKI	GCWGC	2 cut(s)	65, 756
ApoI	RAATTY	3 cut(s)	429, 590, 674
ArsI	GACNNNNNNTTYG	2 cut(s)	103, 135
Asp718I	GGTACC	1 cut(s)	356
AspLEI	GCGC	2 cut(s)	242, 846
AspS9I	GGNCC	1 cut(s)	136
AsuHPI	GGTGA	1 cut(s)	629
AvaI	CYCGRG	1 cut(s)	692
BanI	GGYRCC	1 cut(s)	356
BanII	GRGCYC	2 cut(s)	160, 462
BbsI	GAAGAC	1 cut(s)	627
Bbv12I	GWGCWC	2 cut(s)	160, 462
BbvI	GCAGC	2 cut(s)	77, 768
BccI	CCATC	2 cut(s)	38, 203
BciT130I	CCWGG	1 cut(s)	716
BcoDI	GTCTC	1 cut(s)	975
BfaI	CTAG	5 cut(s)	153, 380, 405, 434, 506
BfoI	RGCGCY	2 cut(s)	243, 847
BisI	GCNGC	2 cut(s)	66, 757
BlsI	GCNGC	2 cut(s)	67, 758
Bme1390I	CCNGG	1 cut(s)	716
BmeRI	GACNNNNNGTC	1 cut(s)	442
BmeT110I	CYCGRG	1 cut(s)	692
BmgT120I	GGNCC	1 cut(s)	136
BmiI	GGNNCC	3 cut(s)	358, 528, 682
BmrFI	CCNGG	1 cut(s)	716
BmsI	GCATC	3 cut(s)	391, 392, 906
BpiI	GAAGAC	1 cut(s)	627
BplI	GAGNNNNNCTC	2 cut(s)	444, 476
BpmI	CTGGAG	1 cut(s)	957
Bsa29I	ATCGAT	1 cut(s)	198
BsaJI	CCNNGG	2 cut(s)	447, 825
BsaXI	ACNNNNNCTCC	2 cut(s)	336, 366
Bsc4I	CCNNNNNNNGG	2 cut(s)	115, 320
Bse118I	RCCGGY	1 cut(s)	846
Bse1I	ACTGG	2 cut(s)	528, 987
Bse3DI	GCAATG	2 cut(s)	267, 760
BseBI	CCWGG	1 cut(s)	716
BseCI	ATCGAT	1 cut(s)	198
BseDI	CCNNGG	2 cut(s)	447, 825
BseLI	CCNNNNNNNGG	2 cut(s)	115, 320
BseMI	GCAATG	2 cut(s)	267, 760
BseMII	CTCAG	2 cut(s)	68, 915
BseNI	ACTGG	2 cut(s)	528, 987
BseRI	GAGGAG	2 cut(s)	492, 495
BseXI	GCAGC	2 cut(s)	77, 768
BseYI	CCCAGC	1 cut(s)	326
BshFI	GGCC	2 cut(s)	29, 138
BshNI	GGYRCC	1 cut(s)	356
BshVI	ATCGAT	1 cut(s)	198
BsiHKAI	GWGCWC	2 cut(s)	160, 462
BsiHKCI	CYCGRG	1 cut(s)	692
BsiSI	CCGG	1 cut(s)	847
BslFI	GGGAC	3 cut(s)	297, 319, 345
BslI	CCNNNNNNNGG	2 cut(s)	115, 320
BsmAI	GTCTC	1 cut(s)	975
BsmFI	GGGAC	3 cut(s)	297, 319, 345
BsnI	GGCC	2 cut(s)	29, 138
BsoBI	CYCGRG	1 cut(s)	692
Bsp1286I	GDGCHC	2 cut(s)	160, 462
Bsp143I	GATC	3 cut(s)	485, 813, 983
Bsp19I	CCATGG	1 cut(s)	447
BspACI	CCGC	2 cut(s)	114, 697
BspANI	GGCC	2 cut(s)	29, 138
BspCNI	CTCAG	2 cut(s)	67, 914
BspDI	ATCGAT	1 cut(s)	198
BspHI	TCATGA	1 cut(s)	121
BspLI	GGNNCC	3 cut(s)	358, 528, 682
BspPI	GGATC	3 cut(s)	493, 808, 978
BspQI	GCTCTTC	1 cut(s)	450
BspT107I	GGYRCC	1 cut(s)	356
BsrDI	GCAATG	2 cut(s)	267, 760
BsrFI	RCCGGY	1 cut(s)	846
BsrI	ACTGG	2 cut(s)	528, 987
BssAI	RCCGGY	1 cut(s)	846
BssECI	CCNNGG	2 cut(s)	447, 825
BssMI	GATC	3 cut(s)	485, 813, 983
BssT1I	CCWWGG	2 cut(s)	447, 825
Bst2UI	CCWGG	1 cut(s)	716
Bst4CI	ACNGT	5 cut(s)	319, 544, 550, 662, 670
Bst6I	CTCTTC	2 cut(s)	272, 450
BstAPI	GCANNNNNTGC	1 cut(s)	762
BstC8I	GCNNGC	4 cut(s)	805, 848, 910, 1006
BstDEI	CTNAG	3 cut(s)	54, 518, 901
BstDSI	CCRYGG	1 cut(s)	447
BstH2I	RGCGCY	2 cut(s)	243, 847
BstHHI	GCGC	2 cut(s)	242, 846
BstKTI	GATC	3 cut(s)	488, 816, 986
BstMAI	GTCTC	1 cut(s)	975
BstMBI	GATC	3 cut(s)	485, 813, 983
BstMWI	GCNNNNNNNGC	3 cut(s)	299, 762, 918
BstNI	CCWGG	1 cut(s)	716
BstSCI	CCNGG	1 cut(s)	714
BstV1I	GCAGC	2 cut(s)	77, 768
BstV2I	GAAGAC	1 cut(s)	627
BstX2I	RGATCY	1 cut(s)	983
BstYI	RGATCY	1 cut(s)	983
Bsu15I	ATCGAT	1 cut(s)	198
BsuRI	GGCC	2 cut(s)	29, 138
BsuTUI	ATCGAT	1 cut(s)	198
BtgI	CCRYGG	1 cut(s)	447
BtsI	GCAGTG	1 cut(s)	772
BtsIMutI	CAGTG	3 cut(s)	346, 772, 994
Cac8I	GCNNGC	4 cut(s)	805, 848, 910, 1006
CaiI	CAGNNNCTG	1 cut(s)	908
CciI	TCATGA	1 cut(s)	121
CfoI	GCGC	2 cut(s)	242, 846
Cfr10I	RCCGGY	1 cut(s)	846
Cfr13I	GGNCC	1 cut(s)	136
ClaI	ATCGAT	1 cut(s)	198
Csp6I	GTAC	1 cut(s)	357
CspCI	CAANNNNNGTGG	2 cut(s)	70, 105
CviAII	CATG	3 cut(s)	122, 448, 510
CviQI	GTAC	1 cut(s)	357
DdeI	CTNAG	3 cut(s)	54, 518, 901
DpnI	GATC	3 cut(s)	487, 815, 985
DpnII	GATC	3 cut(s)	485, 813, 983
DrdI	GACNNNNNNGTC	1 cut(s)	710
DriI	GACNNNNNGTC	1 cut(s)	442
DseDI	GACNNNNNNGTC	1 cut(s)	710
Eam1104I	CTCTTC	2 cut(s)	272, 450
Eam1105I	GACNNNNNGTC	1 cut(s)	442
EarI	CTCTTC	2 cut(s)	272, 450
Ecl136II	GAGCTC	2 cut(s)	158, 460
Eco130I	CCWWGG	2 cut(s)	447, 825
Eco24I	GRGCYC	2 cut(s)	160, 462
Eco53kI	GAGCTC	2 cut(s)	158, 460
Eco57I	CTGAAG	1 cut(s)	860
Eco88I	CYCGRG	1 cut(s)	692
EcoICRI	GAGCTC	2 cut(s)	158, 460
EcoO109I	RGGNCCY	1 cut(s)	136
EcoRI	GAATTC	2 cut(s)	429, 674
EcoRII	CCWGG	1 cut(s)	714
EcoT14I	CCWWGG	2 cut(s)	447, 825
EcoT38I	GRGCYC	2 cut(s)	160, 462
ErhI	CCWWGG	2 cut(s)	447, 825
FaeI	CATG	3 cut(s)	125, 451, 513
FaqI	GGGAC	3 cut(s)	297, 319, 345
FatI	CATG	3 cut(s)	121, 447, 509
FauI	CCCGC	2 cut(s)	107, 690
FblI	GTMKAC	1 cut(s)	702
Fnu4HI	GCNGC	2 cut(s)	66, 757
FriOI	GRGCYC	2 cut(s)	160, 462
Fsp4HI	GCNGC	2 cut(s)	66, 757
FspBI	CTAG	5 cut(s)	153, 380, 405, 434, 506
GlaI	GCGC	2 cut(s)	241, 845
GluI	GCNGC	2 cut(s)	66, 757
GsaI	CCCAGC	1 cut(s)	330
GsuI	CTGGAG	1 cut(s)	957
HaeII	RGCGCY	2 cut(s)	243, 847
HaeIII	GGCC	2 cut(s)	29, 138
HapII	CCGG	1 cut(s)	847
HhaI	GCGC	2 cut(s)	242, 846
Hin1II	CATG	3 cut(s)	125, 451, 513
Hin6I	GCGC	2 cut(s)	240, 844
HinP1I	GCGC	2 cut(s)	240, 844
HincII	GTYRAC	1 cut(s)	703
HindII	GTYRAC	1 cut(s)	703
HindIII	AAGCTT	1 cut(s)	490
HinfI	GANTC	6 cut(s)	50, 105, 498, 781, 797, 821
HpaII	CCGG	1 cut(s)	847
HphI	GGTGA	1 cut(s)	629
Hpy166II	GTNNAC	1 cut(s)	703
Hpy188I	TCNGA	6 cut(s)	110, 368, 388, 476, 880, 904
Hpy188III	TCNNGA	4 cut(s)	122, 153, 434, 974
Hpy8I	GTNNAC	1 cut(s)	703
HpyAV	CCTTC	1 cut(s)	911
HpyCH4III	ACNGT	5 cut(s)	319, 544, 550, 662, 670
HpyCH4V	TGCA	4 cut(s)	272, 584, 765, 1008
HpyF10VI	GCNNNNNNNGC	3 cut(s)	299, 762, 918
HpyF3I	CTNAG	3 cut(s)	54, 518, 901
Hsp92II	CATG	3 cut(s)	125, 451, 513
HspAI	GCGC	2 cut(s)	240, 844
KpnI	GGTACC	1 cut(s)	360
KroI	GCCGGC	1 cut(s)	846
KroNI	GCCGGC	1 cut(s)	848
Kzo9I	GATC	3 cut(s)	485, 813, 983
LguI	GCTCTTC	1 cut(s)	450
LmnI	GCTCC	2 cut(s)	83, 163
Lsp1109I	GCAGC	2 cut(s)	77, 768
LweI	GCATC	3 cut(s)	391, 392, 906
MaeI	CTAG	5 cut(s)	153, 380, 405, 434, 506
MaeIII	GTNAC	4 cut(s)	544, 653, 886, 1013
MalI	GATC	3 cut(s)	487, 815, 985
MboI	GATC	3 cut(s)	485, 813, 983
MboII	GAAGA	4 cut(s)	289, 467, 632, 856
MflI	RGATCY	1 cut(s)	983
MhlI	GDGCHC	2 cut(s)	160, 462
MluCI	AATT	8 cut(s)	7, 72, 408, 429, 590, 674, 851, 963
MlyI	GAGTC	2 cut(s)	507, 791
MmeI	TCCRAC	1 cut(s)	758
MnlI	CCTC	6 cut(s)	19, 127, 338, 470, 473, 476
MroNI	GCCGGC	1 cut(s)	846
MseI	TTAA	1 cut(s)	420
MslI	CAYNNNNRTG	2 cut(s)	339, 765
MspA1I	CMGCKG	1 cut(s)	68
MspI	CCGG	1 cut(s)	847
MspR9I	CCNGG	1 cut(s)	716
MvaI	CCWGG	1 cut(s)	716
MwoI	GCNNNNNNNGC	3 cut(s)	299, 762, 918
NaeI	GCCGGC	1 cut(s)	848
NcoI	CCATGG	1 cut(s)	447
NdeII	GATC	3 cut(s)	485, 813, 983
NgoMIV	GCCGGC	1 cut(s)	846
NlaIII	CATG	3 cut(s)	125, 451, 513
NlaIV	GGNNCC	3 cut(s)	358, 528, 682
NmuCI	GTSAC	3 cut(s)	653, 886, 1013
OliI	CACNNNNGTG	1 cut(s)	339
PagI	TCATGA	1 cut(s)	121
PciSI	GCTCTTC	1 cut(s)	450
PcsI	WCGNNNNNNNCGW	1 cut(s)	699
PdiI	GCCGGC	1 cut(s)	848
PfeI	GAWTC	4 cut(s)	50, 105, 781, 821
PflFI	GACNNNGTC	1 cut(s)	392
PkrI	GCNGC	2 cut(s)	67, 758
PleI	GAGTC	2 cut(s)	506, 791
PpsI	GAGTC	2 cut(s)	506, 791
Psp124BI	GAGCTC	2 cut(s)	160, 462
Psp6I	CCWGG	1 cut(s)	714
PspFI	CCCAGC	1 cut(s)	326
PspGI	CCWGG	1 cut(s)	714
PspN4I	GGNNCC	3 cut(s)	358, 528, 682
PspPI	GGNCC	1 cut(s)	136
PstNI	CAGNNNCTG	1 cut(s)	908
PsuI	RGATCY	1 cut(s)	983
PsyI	GACNNNGTC	1 cut(s)	392
PvuII	CAGCTG	1 cut(s)	68
RsaI	GTAC	1 cut(s)	358
RsaNI	GTAC	1 cut(s)	357
RseI	CAYNNNNRTG	2 cut(s)	339, 765
SacI	GAGCTC	2 cut(s)	160, 462
SalI	GTCGAC	1 cut(s)	701
SapI	GCTCTTC	1 cut(s)	450
SaqAI	TTAA	1 cut(s)	420
SatI	GCNGC	2 cut(s)	66, 757
Sau3AI	GATC	3 cut(s)	485, 813, 983
Sau96I	GGNCC	1 cut(s)	136
SchI	GAGTC	2 cut(s)	507, 791
ScrFI	CCNGG	1 cut(s)	716
SduI	GDGCHC	2 cut(s)	160, 462
SfaNI	GCATC	3 cut(s)	391, 392, 906
SmiMI	CAYNNNNRTG	2 cut(s)	339, 765
Sse9I	AATT	8 cut(s)	7, 72, 408, 429, 590, 674, 851, 963
SsiI	CCGC	2 cut(s)	114, 697
SspMI	CTAG	5 cut(s)	153, 380, 405, 434, 506
SstI	GAGCTC	2 cut(s)	160, 462
StyD4I	CCNGG	1 cut(s)	714
StyI	CCWWGG	2 cut(s)	447, 825
TaaI	ACNGT	5 cut(s)	319, 544, 550, 662, 670
TaqI	TCGA	3 cut(s)	198, 702, 812
TasI	AATT	8 cut(s)	7, 72, 408, 429, 590, 674, 851, 963
TfiI	GAWTC	4 cut(s)	50, 105, 781, 821
Tru1I	TTAA	1 cut(s)	420
Tru9I	TTAA	1 cut(s)	420
TscAI	CASTG	3 cut(s)	346, 772, 994
TseFI	GTSAC	3 cut(s)	653, 886, 1013
TseI	GCWGC	2 cut(s)	65, 756
Tsp45I	GTSAC	3 cut(s)	653, 886, 1013
TspDTI	ATGAA	2 cut(s)	63, 154
TspGWI	ACGGA	1 cut(s)	179
TspRI	CASTG	3 cut(s)	346, 772, 994
Tth111I	GACNNNGTC	1 cut(s)	392
XapI	RAATTY	3 cut(s)	429, 590, 674
XbaI	TCTAGA	2 cut(s)	152, 433
XmiI	GTMKAC	1 cut(s)	702
XspI	CTAG	5 cut(s)	153, 380, 405, 434, 506

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.