Prupe.4G097100_v2.0.a1

Belongs to the oxygen-dependent FAD-linked oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0000925
Physical Location & Seq
Reverse (-)
4878193 .. 4879788
1596 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G097100.1

Sequence Viewer

Length: 1596 bp
ATGGAGATCTCACACGTAAAACTAGTTCCAGTTCTACTTTTCATCCTTCTCAGCTCTGTTTGGTGCACTACTTCAAGCTCAATTTCTGAAAGCTTTCTTCAATGCTTTTCCTCCCACATACATTCTAAGTCAACAAGCAAAATTATTCTCACCAGAAAAAGTTCTTCTTATTCCTCAGTCTTGCACTCTTCCATACAGAATCTCAGATTCTTGAACACTTCAACCCCACAACCAGAAGCTATCATTACTCCTTTTCGATACTCTCATGTTCAAGCAGCTGTAATTTGCTCCAAGAAAGAAGGCATACAAATAAGAACCCGAAGTGGGGGGCATGACTATGAGGGCCTATCTTATGTATCCAAATCTCCTTTCATCATCATTGATCTTTTCAAACTTCGGTCCATCGATATTGACATAAAGAATGAGAGGGCTTGGGTCGAATCCGGTGTCACACTCGGAGAGTTGTATTACGCAATTGCACAGAAAAGTAAAGTCTATGGCTTTCCAGCAGGGATTTGTCCAACTATTGGTGTTGGGGGACATATTAGTGGAGGTGGCTTTGGTACCTTGTTCAGGAAATATGGTCTGGCAGCTGACAATGTCCGTGATGCTAAGATTGTCGACGTTAATGGCAGAGTTCTTGACAGAAAATCCATGGGAGAAGAACTCTTTTGGGCTATTAGAGGAGGGGGAGGTTCAAGCTTTGGAGTCATTCTGGCATGGAAACTTGAGTTGGTTCCTGTTCCTCCATCTGTAACAGTTTACACAGAATCAAAGACCATAAAACAGGGTGCAACCAAACTTATTTCTAGATGGCAAGCTATAGCAGATAGGATTCCTGAAGGGAATTTCTTGCGTTTGGTTATACAAGGTGCAAATGGAGATGGTACAAATGGTGGAAAAACTATTCAAGTTATATTCAATTTCTTGTTTCTTCAGACTGTCGAGAAACTTCTCCCCTGGATGAAAGAAAACTTCCCAGAGTTAAGTGTAGAGCAAACCAAATTTGCTGAAATGAGTTGGATTGAGTCTGTTCTATCCATGGCTGACATCCAAAGAAACAAAACAGAAGTTCTGCTTCAGCGGACTCAACAATCTAAGAGATTCTTCAAAGCAAAATCAGACTATGTGACAAAACCAATTTCAGAAGCTGGCTTGGAAGGTTTATGGCACATTATGCTTCAACTAGACACATCCCTGTTGATACTGTCACCTTTCGGGGGAAGAATGAGTGAGATTTCTGATTCAGAAACTCCTTTCCCACATAGAAAAGGGAACTTATATGAAATCCAGTATTATGTCAGTTGGGATGATGACAAAGAAACTGAGAAACATATTAGCTGGACAAGAAGGGTGTATGGCTACATGGAAGCATATGTTTCCAAGTCCCCAAGAGCTGCCTATTTGAACTACAGGGATATGGACTTGGGGATGAATAAGGATACTAACACAAGCTATAAACAAGCAAGCCTTTGGGGTTTGAGCTACTTCAAGAATAACTTTAGGAGACTTGCACAAGTGAAGACCTTAGTTGATCCTGGTAACTTCTTTAGGAATGAACAAAGCATCCCTGTGTTACCATATGGGGAAAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
BBE FAD_binding_4

Protein Analysis

532

Amino Acids

59.83

Weight (kDa)

9.24

Isoelectric Point (pI)

43.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 563
AccB1I GGYRCC 1 cut(s) 563
AccB7I CCANNNNNTGG 1 cut(s) 527
AccI GTMKAC 1 cut(s) 621
AciI CCGC 1 cut(s) 1084
AclWI GGATC 1 cut(s) 1529
AcsI RAATTY 2 cut(s) 847, 1004
AcuI CTGAAG 3 cut(s) 861, 920, 1064
AfaI GTAC 2 cut(s) 565, 889
AfiI CCNNNNNNNGG 5 cut(s) 324, 325, 527, 573, 1220
AflIII ACRYGT 1 cut(s) 13
AhlI ACTAGT 1 cut(s) 22
AjnI CCWGG 2 cut(s) 959, 1537
AjuI GAANNNNNNNTTGG 4 cut(s) 353, 385, 716, 748
AloI GAACNNNNNNTCC 2 cut(s) 1551, 1583
Alw21I GWGCWC 1 cut(s) 68
Alw26I GTCTC 1 cut(s) 1501
Alw44I GTGCAC 1 cut(s) 64
AlwI GGATC 1 cut(s) 1529
AlwNI CAGNNNCTG 1 cut(s) 1151
AoxI GGCC 1 cut(s) 343
ApaLI GTGCAC 1 cut(s) 64
ApeKI GCWGC 3 cut(s) 275, 590, 1397
ApoI RAATTY 2 cut(s) 847, 1004
ArsI GACNNNNNNTTYG 2 cut(s) 432, 464
Asp700I GAANNNNTTC 2 cut(s) 93, 160
Asp718I GGTACC 1 cut(s) 563
AspS9I GGNCC 2 cut(s) 343, 399
AsuHPI GGTGA 2 cut(s) 142, 1203
AvaII GGWCC 1 cut(s) 399
BaeGI GKGCMC 1 cut(s) 68
BanI GGYRCC 1 cut(s) 563
BbsI GAAGAC 1 cut(s) 1529
Bbv12I GWGCWC 1 cut(s) 68
BbvI GCAGC 3 cut(s) 287, 602, 1384
BccI CCATC 4 cut(s) 410, 757, 807, 878
BciT130I CCWGG 2 cut(s) 961, 1539
BciVI GTATCC 2 cut(s) 367, 1435
BcoDI GTCTC 1 cut(s) 1501
BcuI ACTAGT 1 cut(s) 22
BfaI CTAG 3 cut(s) 23, 810, 1187
BfmI CTRYAG 2 cut(s) 822, 1411
BfuI GTATCC 2 cut(s) 367, 1435
BglII AGATCT 1 cut(s) 6
BisI GCNGC 3 cut(s) 276, 591, 1398
BlsI GCNGC 3 cut(s) 277, 592, 1399
Bme1390I CCNGG 2 cut(s) 961, 1539
Bme18I GGWCC 1 cut(s) 399
BmgT120I GGNCC 2 cut(s) 343, 399
BmiI GGNNCC 2 cut(s) 565, 738
BmrFI CCNGG 2 cut(s) 961, 1539
BmsI GCATC 2 cut(s) 598, 1575
BpiI GAAGAC 1 cut(s) 1529
BplI GAGNNNNNCTC 2 cut(s) 651, 683
BpuEI CTTGAG 1 cut(s) 749
Bsa29I ATCGAT 1 cut(s) 405
BsaAI YACGTR 1 cut(s) 16
BsaJI CCNNGG 3 cut(s) 654, 959, 1041
BsaWI WCCGGW 1 cut(s) 443
Bsc4I CCNNNNNNNGG 5 cut(s) 324, 325, 527, 573, 1220
Bse1I ACTGG 2 cut(s) 29, 1291
BseBI CCWGG 2 cut(s) 961, 1539
BseCI ATCGAT 1 cut(s) 405
BseDI CCNNGG 3 cut(s) 654, 959, 1041
BseGI GGATG 7 cut(s) 42, 969, 1050, 1193, 1315, 1437, 1566
BseLI CCNNNNNNNGG 5 cut(s) 324, 325, 527, 573, 1220
BseMII CTCAG 4 cut(s) 64, 189, 217, 1317
BseNI ACTGG 2 cut(s) 29, 1291
BseRI GAGGAG 1 cut(s) 699
BseSI GKGCMC 1 cut(s) 68
BseXI GCAGC 3 cut(s) 287, 602, 1384
BshFI GGCC 1 cut(s) 345
BshNI GGYRCC 1 cut(s) 563
BshVI ATCGAT 1 cut(s) 405
BsiHKAI GWGCWC 1 cut(s) 68
BsiSI CCGG 1 cut(s) 444
BslFI GGGAC 2 cut(s) 552, 1372
BslI CCNNNNNNNGG 5 cut(s) 324, 325, 527, 573, 1220
BsmAI GTCTC 1 cut(s) 1501
BsmFI GGGAC 2 cut(s) 552, 1372
BsnI GGCC 1 cut(s) 345
Bsp1286I GDGCHC 1 cut(s) 68
Bsp143I GATC 3 cut(s) 6, 382, 1534
Bsp19I CCATGG 2 cut(s) 654, 1041
BspACI CCGC 1 cut(s) 1084
BspANI GGCC 1 cut(s) 345
BspCNI CTCAG 4 cut(s) 63, 188, 216, 1318
BspDI ATCGAT 1 cut(s) 405
BspLI GGNNCC 2 cut(s) 565, 738
BspPI GGATC 1 cut(s) 1529
BspT107I GGYRCC 1 cut(s) 563
BsrI ACTGG 2 cut(s) 29, 1291
BssECI CCNNGG 3 cut(s) 654, 959, 1041
BssMI GATC 3 cut(s) 6, 382, 1534
BssT1I CCWWGG 2 cut(s) 654, 1041
Bst2UI CCWGG 2 cut(s) 961, 1539
Bst4CI ACNGT 3 cut(s) 760, 943, 1209
Bst6I CTCTTC 1 cut(s) 193
BstAPI GCANNNNNTGC 1 cut(s) 1177
BstBAI YACGTR 1 cut(s) 16
BstC8I GCNNGC 3 cut(s) 819, 1153, 1468
BstDEI CTNAG 8 cut(s) 50, 126, 175, 203, 612, 1098, 1326, 1528
BstDSI CCRYGG 2 cut(s) 654, 1041
BstENI CCTNNNNNAGG 1 cut(s) 571
BstF5I GGATG 7 cut(s) 42, 969, 1050, 1193, 1315, 1437, 1566
BstKTI GATC 3 cut(s) 9, 385, 1537
BstMAI GTCTC 1 cut(s) 1501
BstMBI GATC 3 cut(s) 6, 382, 1534
BstMWI GCNNNNNNNGC 1 cut(s) 1177
BstNI CCWGG 2 cut(s) 961, 1539
BstSCI CCNGG 2 cut(s) 959, 1537
BstSFI CTRYAG 2 cut(s) 822, 1411
BstSLI GKGCMC 1 cut(s) 68
BstV1I GCAGC 3 cut(s) 287, 602, 1384
BstV2I GAAGAC 1 cut(s) 1529
BstX2I RGATCY 1 cut(s) 6
BstYI RGATCY 1 cut(s) 6
Bsu15I ATCGAT 1 cut(s) 405
BsuI GTATCC 2 cut(s) 367, 1435
BsuRI GGCC 1 cut(s) 345
BsuTUI ATCGAT 1 cut(s) 405
BtgI CCRYGG 2 cut(s) 654, 1041
BtsCI GGATG 7 cut(s) 42, 969, 1050, 1193, 1315, 1437, 1566
Cac8I GCNNGC 3 cut(s) 819, 1153, 1468
CaiI CAGNNNCTG 1 cut(s) 1151
Cfr13I GGNCC 2 cut(s) 343, 399
ClaI ATCGAT 1 cut(s) 405
Csp6I GTAC 2 cut(s) 564, 888
CviAII CATG 6 cut(s) 266, 332, 655, 720, 1042, 1366
CviQI GTAC 2 cut(s) 564, 888
DdeI CTNAG 8 cut(s) 50, 126, 175, 203, 612, 1098, 1326, 1528
DpnI GATC 3 cut(s) 8, 384, 1536
DpnII GATC 3 cut(s) 6, 382, 1534
Eam1104I CTCTTC 1 cut(s) 193
EarI CTCTTC 1 cut(s) 193
Eco130I CCWWGG 2 cut(s) 654, 1041
Eco47I GGWCC 1 cut(s) 399
Eco57I CTGAAG 3 cut(s) 861, 920, 1064
EcoNI CCTNNNNNAGG 1 cut(s) 571
EcoO109I RGGNCCY 1 cut(s) 343
EcoRII CCWGG 2 cut(s) 959, 1537
EcoT14I CCWWGG 2 cut(s) 654, 1041
ErhI CCWWGG 2 cut(s) 654, 1041
FaeI CATG 6 cut(s) 269, 335, 658, 723, 1045, 1369
FaqI GGGAC 2 cut(s) 552, 1372
FatI CATG 6 cut(s) 265, 331, 654, 719, 1041, 1365
FauNDI CATATG 2 cut(s) 1375, 1582
FblI GTMKAC 1 cut(s) 621
Fnu4HI GCNGC 3 cut(s) 276, 591, 1398
FokI GGATG 7 cut(s) 29, 976, 1037, 1180, 1322, 1444, 1553
Fsp4HI GCNGC 3 cut(s) 276, 591, 1398
FspBI CTAG 3 cut(s) 23, 810, 1187
GluI GCNGC 3 cut(s) 276, 591, 1398
HaeIII GGCC 1 cut(s) 345
HapII CCGG 1 cut(s) 444
Hin1II CATG 6 cut(s) 269, 335, 658, 723, 1045, 1369
HincII GTYRAC 2 cut(s) 132, 622
HindII GTYRAC 2 cut(s) 132, 622
HindIII AAGCTT 2 cut(s) 91, 700
HpaII CCGG 1 cut(s) 444
HphI GGTGA 2 cut(s) 142, 1203
Hpy166II GTNNAC 4 cut(s) 66, 132, 622, 763
Hpy188I TCNGA 8 cut(s) 88, 206, 458, 939, 1123, 1147, 1243, 1249
Hpy188III TCNNGA 7 cut(s) 211, 574, 641, 810, 839, 946, 1492
Hpy8I GTNNAC 4 cut(s) 66, 132, 622, 763
Hpy99I CGWCG 1 cut(s) 626
HpyAV CCTTC 5 cut(s) 56, 293, 836, 1154, 1344
HpyCH4III ACNGT 3 cut(s) 760, 943, 1209
HpyCH4IV ACGT 2 cut(s) 15, 624
HpyCH4V TGCA 6 cut(s) 66, 184, 479, 794, 875, 1514
HpyF10VI GCNNNNNNNGC 1 cut(s) 1177
HpyF3I CTNAG 8 cut(s) 50, 126, 175, 203, 612, 1098, 1326, 1528
HpySE526I ACGT 2 cut(s) 15, 624
Hsp92II CATG 6 cut(s) 269, 335, 658, 723, 1045, 1369
KpnI GGTACC 1 cut(s) 567
Kzo9I GATC 3 cut(s) 6, 382, 1534
LmnI GCTCC 1 cut(s) 293
Lsp1109I GCAGC 3 cut(s) 287, 602, 1384
LweI GCATC 2 cut(s) 598, 1575
MaeI CTAG 3 cut(s) 23, 810, 1187
MaeII ACGT 2 cut(s) 15, 624
MaeIII GTNAC 6 cut(s) 448, 754, 1129, 1209, 1541, 1575
MalI GATC 3 cut(s) 8, 384, 1536
MboI GATC 3 cut(s) 6, 382, 1534
MboII GAAGA 8 cut(s) 89, 156, 180, 674, 926, 1099, 1236, 1534
MfeI CAATTG 1 cut(s) 474
MflI RGATCY 1 cut(s) 6
MhlI GDGCHC 1 cut(s) 68
MluCI AATT 8 cut(s) 81, 141, 282, 474, 847, 922, 1004, 1140
MlyI GAGTC 3 cut(s) 717, 1037, 1081
MmeI TCCRAC 2 cut(s) 545, 1001
MnlI CCTC 9 cut(s) 121, 184, 334, 420, 545, 677, 680, 686, 756
MroXI GAANNNNTTC 2 cut(s) 93, 160
MseI TTAA 2 cut(s) 627, 986
MslI CAYNNNNRTG 3 cut(s) 336, 546, 1571
MspA1I CMGCKG 3 cut(s) 278, 593, 1084
MspI CCGG 1 cut(s) 444
MspR9I CCNGG 2 cut(s) 961, 1539
MunI CAATTG 1 cut(s) 474
MvaI CCWGG 2 cut(s) 961, 1539
MwoI GCNNNNNNNGC 1 cut(s) 1177
NcoI CCATGG 2 cut(s) 654, 1041
NdeI CATATG 2 cut(s) 1375, 1582
NdeII GATC 3 cut(s) 6, 382, 1534
NlaIII CATG 6 cut(s) 269, 335, 658, 723, 1045, 1369
NlaIV GGNNCC 2 cut(s) 565, 738
NmuCI GTSAC 3 cut(s) 448, 1129, 1209
PdmI GAANNNNTTC 2 cut(s) 93, 160
PfeI GAWTC 7 cut(s) 199, 207, 440, 770, 835, 1104, 1244
PflFI GACNNNGTC 1 cut(s) 599
PflMI CCANNNNNTGG 1 cut(s) 527
PkrI GCNGC 3 cut(s) 277, 592, 1399
PleI GAGTC 3 cut(s) 716, 1036, 1081
PpsI GAGTC 3 cut(s) 716, 1036, 1081
Ppu21I YACGTR 1 cut(s) 16
Psp6I CCWGG 2 cut(s) 959, 1537
PspGI CCWGG 2 cut(s) 959, 1537
PspN4I GGNNCC 2 cut(s) 565, 738
PspPI GGNCC 2 cut(s) 343, 399
PsrI GAACNNNNNNTAC 2 cut(s) 9, 41
PstNI CAGNNNCTG 1 cut(s) 1151
PsuI RGATCY 1 cut(s) 6
PsyI GACNNNGTC 1 cut(s) 599
PvuII CAGCTG 2 cut(s) 278, 593
RsaI GTAC 2 cut(s) 565, 889
RsaNI GTAC 2 cut(s) 564, 888
RseI CAYNNNNRTG 3 cut(s) 336, 546, 1571
SalI GTCGAC 1 cut(s) 620
SaqAI TTAA 2 cut(s) 627, 986
SatI GCNGC 3 cut(s) 276, 591, 1398
Sau3AI GATC 3 cut(s) 6, 382, 1534
Sau96I GGNCC 2 cut(s) 343, 399
SchI GAGTC 3 cut(s) 717, 1037, 1081
ScrFI CCNGG 2 cut(s) 961, 1539
SduI GDGCHC 1 cut(s) 68
SfaNI GCATC 2 cut(s) 598, 1575
SfcI CTRYAG 2 cut(s) 822, 1411
SinI GGWCC 1 cut(s) 399
SmiMI CAYNNNNRTG 3 cut(s) 336, 546, 1571
SmlI CTYRAG 1 cut(s) 728
SmoI CTYRAG 1 cut(s) 728
SpeI ACTAGT 1 cut(s) 22
Sse9I AATT 8 cut(s) 81, 141, 282, 474, 847, 922, 1004, 1140
SsiI CCGC 1 cut(s) 1084
SspMI CTAG 3 cut(s) 23, 810, 1187
StyD4I CCNGG 2 cut(s) 959, 1537
StyI CCWWGG 2 cut(s) 654, 1041
TaaI ACNGT 3 cut(s) 760, 943, 1209
TaiI ACGT 2 cut(s) 18, 627
TaqI TCGA 5 cut(s) 256, 405, 438, 621, 945
TaqII GACCGA 1 cut(s) 387
TasI AATT 8 cut(s) 81, 141, 282, 474, 847, 922, 1004, 1140
TfiI GAWTC 7 cut(s) 199, 207, 440, 770, 835, 1104, 1244
Tru1I TTAA 2 cut(s) 627, 986
Tru9I TTAA 2 cut(s) 627, 986
TseFI GTSAC 3 cut(s) 448, 1129, 1209
TseI GCWGC 3 cut(s) 275, 590, 1397
Tsp45I GTSAC 3 cut(s) 448, 1129, 1209
TspDTI ATGAA 6 cut(s) 31, 361, 980, 1299, 1448, 1572
TspGWI ACGGA 1 cut(s) 593
Tth111I GACNNNGTC 1 cut(s) 599
Van91I CCANNNNNTGG 1 cut(s) 527
VneI GTGCAC 1 cut(s) 64
VpaK11BI GGWCC 1 cut(s) 399
XagI CCTNNNNNAGG 1 cut(s) 571
XapI RAATTY 2 cut(s) 847, 1004
XbaI TCTAGA 1 cut(s) 809
XmiI GTMKAC 1 cut(s) 621
XmnI GAANNNNTTC 2 cut(s) 93, 160
XspI CTAG 3 cut(s) 23, 810, 1187
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.