RchiOBHm_Chr5g0017661

Belongs to the oxygen-dependent FAD-linked oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000925
Physical Location & Seq
Reverse (-)
12248429 .. 12249978
1550 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ29793

Sequence Viewer

Length: 666 bp
ATGGAGAAAATTAATATGACAATATTTGTAAAATCAGAAGCTGTCATTACTCCGCTTCATGAATCTCATGTTCAAGCAGCAATTATATGCTCGAAGCAACAAGGCATACAAGTCAAGTTAGGAGCTACTCTTGGAGAAGTGTATTACAAAATTGCAGAAAAAGGACAATTCTTAGGTTCGGGAAATCCATGGGAGAAGATTTGTTTTGGAGGCTCAAGCTTTGGAGTCATTCTTGCATGGAAACTTACACTGGTTCCAGTTCCCCCATCTGTAACTGTTTTCCAAATTGAAAAAACCATAGAAGAACGTGCTACCAGACTTCTTTCTAAGTGGCAAGTCATAGCATATAAGCTTCATGGAGACCTGTTCCTCCATTTATTGATAGGTGTTGCAGATAAAGCTGGCACCACTGGCGGCAAAACTATCTCAATTTCATTTGATGCATTGTTCCTTGGACCAGTTGAGAAACTTCTTCCTTTGATGCAAGACAATTTCCCATACTTAAGTTTAAACTGCAGTGATTGCACTGAAATGAGGTGGATTGAATCTGTTATGCACCATGCTGGCTTCTCAAGAAGTGAACCTCTGGAAGTTTTGCTTAACTGGGCTCAACCATCTAGGTACTTCTTCAAAGCAAAATCAAACTGTGACCTGTTTGAATTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
BBE FAD_binding_4

Protein Analysis

221

Amino Acids

24.71

Weight (kDa)

7.0

Isoelectric Point (pI)

36.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 404
AciI CCGC 2 cut(s) 53, 414
AcsI RAATTY 1 cut(s) 659
AfaI GTAC 1 cut(s) 623
AflII CTTAAG 1 cut(s) 502
AgsI TTSAA 5 cut(s) 74, 290, 545, 631, 659
AluBI AGCT 5 cut(s) 41, 125, 219, 352, 401
AluI AGCT 5 cut(s) 41, 125, 219, 352, 401
Alw26I GTCTC 1 cut(s) 354
AlwNI CAGNNNCTG 1 cut(s) 41
ApeKI GCWGC 1 cut(s) 77
ApoI RAATTY 1 cut(s) 659
AseI ATTAAT 1 cut(s) 12
AspS9I GGNCC 1 cut(s) 455
AvaII GGWCC 1 cut(s) 455
BanI GGYRCC 1 cut(s) 404
BanII GRGCYC 1 cut(s) 610
BbvI GCAGC 1 cut(s) 89
BccI CCATC 2 cut(s) 274, 622
BcoDI GTCTC 1 cut(s) 354
BfaI CTAG 1 cut(s) 618
BfmI CTRYAG 1 cut(s) 514
BfrI CTTAAG 1 cut(s) 502
BisI GCNGC 2 cut(s) 78, 415
BlsI GCNGC 2 cut(s) 79, 416
Bme18I GGWCC 1 cut(s) 455
BmgT120I GGNCC 1 cut(s) 455
BmiI GGNNCC 2 cut(s) 255, 406
BmrI ACTGGG 1 cut(s) 613
BmsI GCATC 2 cut(s) 430, 471
BmuI ACTGGG 1 cut(s) 613
BpuEI CTTGAG 2 cut(s) 199, 556
BsaI GGTCTC 1 cut(s) 354
BsaJI CCNNGG 2 cut(s) 188, 451
Bse1I ACTGG 5 cut(s) 255, 257, 415, 458, 608
BseDI CCNNGG 2 cut(s) 188, 451
BseNI ACTGG 5 cut(s) 255, 257, 415, 458, 608
BseXI GCAGC 1 cut(s) 89
BshNI GGYRCC 1 cut(s) 404
BsmAI GTCTC 1 cut(s) 354
Bso31I GGTCTC 1 cut(s) 354
Bsp1286I GDGCHC 1 cut(s) 610
Bsp19I CCATGG 1 cut(s) 188
BspACI CCGC 2 cut(s) 53, 414
BspHI TCATGA 1 cut(s) 58
BspLI GGNNCC 2 cut(s) 255, 406
BspMAI CTGCAG 1 cut(s) 518
BspT107I GGYRCC 1 cut(s) 404
BspTI CTTAAG 1 cut(s) 502
BspTNI GGTCTC 1 cut(s) 354
BsrI ACTGG 5 cut(s) 255, 257, 415, 458, 608
BssECI CCNNGG 2 cut(s) 188, 451
BssT1I CCWWGG 2 cut(s) 188, 451
Bst4CI ACNGT 2 cut(s) 277, 647
BstAFI CTTAAG 1 cut(s) 502
BstAPI GCANNNNNTGC 1 cut(s) 522
BstC8I GCNNGC 2 cut(s) 403, 565
BstDEI CTNAG 2 cut(s) 172, 327
BstDSI CCRYGG 1 cut(s) 188
BstMAI GTCTC 1 cut(s) 354
BstMWI GCNNNNNNNGC 3 cut(s) 398, 411, 522
BstSFI CTRYAG 1 cut(s) 514
BstV1I GCAGC 1 cut(s) 89
BtgI CCRYGG 1 cut(s) 188
BtsI GCAGTG 1 cut(s) 523
BtsIMutI CAGTG 4 cut(s) 248, 408, 523, 525
Cac8I GCNNGC 2 cut(s) 403, 565
CaiI CAGNNNCTG 1 cut(s) 41
CciI TCATGA 1 cut(s) 58
Cfr13I GGNCC 1 cut(s) 455
Csp6I GTAC 1 cut(s) 622
CviAII CATG 6 cut(s) 59, 68, 189, 237, 356, 560
CviJI RGCY 8 cut(s) 41, 125, 213, 219, 352, 401, 567, 608
CviKI_1 RGCY 8 cut(s) 41, 125, 213, 219, 352, 401, 567, 608
CviQI GTAC 1 cut(s) 622
DdeI CTNAG 2 cut(s) 172, 327
DraI TTTAAA 1 cut(s) 510
Eco130I CCWWGG 2 cut(s) 188, 451
Eco24I GRGCYC 1 cut(s) 610
Eco31I GGTCTC 1 cut(s) 354
Eco47I GGWCC 1 cut(s) 455
EcoT14I CCWWGG 2 cut(s) 188, 451
EcoT22I ATGCAT 1 cut(s) 445
EcoT38I GRGCYC 1 cut(s) 610
ErhI CCWWGG 2 cut(s) 188, 451
FaeI CATG 6 cut(s) 62, 71, 192, 240, 359, 563
FalI AAGNNNNNCTT 2 cut(s) 582, 614
FatI CATG 6 cut(s) 58, 67, 188, 236, 355, 559
Fnu4HI GCNGC 2 cut(s) 78, 415
FriOI GRGCYC 1 cut(s) 610
Fsp4HI GCNGC 2 cut(s) 78, 415
FspBI CTAG 1 cut(s) 618
GluI GCNGC 2 cut(s) 78, 415
Hin1II CATG 6 cut(s) 62, 71, 192, 240, 359, 563
HindIII AAGCTT 2 cut(s) 217, 350
HinfI GANTC 3 cut(s) 62, 225, 545
Hpy166II GTNNAC 1 cut(s) 581
Hpy188I TCNGA 1 cut(s) 37
Hpy188III TCNNGA 4 cut(s) 59, 180, 573, 587
Hpy8I GTNNAC 1 cut(s) 581
HpyCH4III ACNGT 2 cut(s) 277, 647
HpyCH4IV ACGT 1 cut(s) 307
HpyCH4V TGCA 8 cut(s) 155, 236, 392, 443, 484, 516, 525, 556
HpyF10VI GCNNNNNNNGC 3 cut(s) 398, 411, 522
HpyF3I CTNAG 2 cut(s) 172, 327
HpySE526I ACGT 1 cut(s) 307
Hsp92II CATG 6 cut(s) 62, 71, 192, 240, 359, 563
LmnI GCTCC 1 cut(s) 122
Lsp1109I GCAGC 1 cut(s) 89
LweI GCATC 2 cut(s) 430, 471
MaeI CTAG 1 cut(s) 618
MaeII ACGT 1 cut(s) 307
MaeIII GTNAC 2 cut(s) 271, 647
MboII GAAGA 4 cut(s) 208, 314, 464, 619
MhlI GDGCHC 1 cut(s) 610
MluCI AATT 8 cut(s) 9, 81, 150, 167, 285, 429, 490, 659
MlyI GAGTC 1 cut(s) 234
MnlI CCTC 4 cut(s) 203, 380, 528, 594
Mph1103I ATGCAT 1 cut(s) 445
MseI TTAA 4 cut(s) 12, 503, 509, 600
MslI CAYNNNNRTG 1 cut(s) 530
MspCI CTTAAG 1 cut(s) 502
MssI GTTTAAAC 1 cut(s) 510
MwoI GCNNNNNNNGC 3 cut(s) 398, 411, 522
NcoI CCATGG 1 cut(s) 188
NlaIII CATG 6 cut(s) 62, 71, 192, 240, 359, 563
NlaIV GGNNCC 2 cut(s) 255, 406
NmuCI GTSAC 1 cut(s) 647
NsiI ATGCAT 1 cut(s) 445
PagI TCATGA 1 cut(s) 58
PfeI GAWTC 2 cut(s) 62, 545
PkrI GCNGC 2 cut(s) 79, 416
PleI GAGTC 1 cut(s) 233
PmeI GTTTAAAC 1 cut(s) 510
PpsI GAGTC 1 cut(s) 233
PshBI ATTAAT 1 cut(s) 12
PspN4I GGNNCC 2 cut(s) 255, 406
PspPI GGNCC 1 cut(s) 455
PstI CTGCAG 1 cut(s) 518
PstNI CAGNNNCTG 1 cut(s) 41
RsaI GTAC 1 cut(s) 623
RsaNI GTAC 1 cut(s) 622
RseI CAYNNNNRTG 1 cut(s) 530
SaqAI TTAA 4 cut(s) 12, 503, 509, 600
SatI GCNGC 2 cut(s) 78, 415
Sau96I GGNCC 1 cut(s) 455
SchI GAGTC 1 cut(s) 234
SduI GDGCHC 1 cut(s) 610
SfaNI GCATC 2 cut(s) 430, 471
SfcI CTRYAG 1 cut(s) 514
SinI GGWCC 1 cut(s) 455
SmiMI CAYNNNNRTG 1 cut(s) 530
SmlI CTYRAG 3 cut(s) 214, 502, 571
SmoI CTYRAG 3 cut(s) 214, 502, 571
Sse9I AATT 8 cut(s) 9, 81, 150, 167, 285, 429, 490, 659
SsiI CCGC 2 cut(s) 53, 414
SspI AATATT 1 cut(s) 24
SspMI CTAG 1 cut(s) 618
StyI CCWWGG 2 cut(s) 188, 451
TaaI ACNGT 2 cut(s) 277, 647
TaiI ACGT 1 cut(s) 310
TaqI TCGA 1 cut(s) 92
TasI AATT 8 cut(s) 9, 81, 150, 167, 285, 429, 490, 659
TauI GCSGC 1 cut(s) 417
TfiI GAWTC 2 cut(s) 62, 545
Tru1I TTAA 4 cut(s) 12, 503, 509, 600
Tru9I TTAA 4 cut(s) 12, 503, 509, 600
TscAI CASTG 4 cut(s) 255, 415, 523, 532
TseFI GTSAC 1 cut(s) 647
TseI GCWGC 1 cut(s) 77
Tsp45I GTSAC 1 cut(s) 647
TspDTI ATGAA 4 cut(s) 47, 75, 344, 423
TspRI CASTG 4 cut(s) 255, 415, 523, 532
Vha464I CTTAAG 1 cut(s) 502
VpaK11BI GGWCC 1 cut(s) 455
VspI ATTAAT 1 cut(s) 12
XapI RAATTY 1 cut(s) 659
XspI CTAG 1 cut(s) 618
Zsp2I ATGCAT 1 cut(s) 445
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.