MD03G1287900.v1.1

Belongs to the complex I LYR family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
OG0011003
Physical Location & Seq
Forward (+)
36678493 .. 36679959
1467 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1287900.v1.1.491

Sequence Viewer

Length: 318 bp
ATGACGAGAGCACAAGTACTGAACGCGTACAAAGCTTTGCTACGAGCGACGCGGAAGTCCTTCGCCGGAGACGTGACGATGCTGAACGGCGCGGCGGCGGAGGTCCGCAAGAAGTTCGAAGAGAGCAGGCACGTGACGTCAGAGGCGGAGATCCAGAGTCTCCTGGATCAGGCAGGCGAGGCCTCCCGTTTCATCAGCGAAATGATCGTCCAGGCCAAGCTCAATTCCCGCGGCGGTTACGAAGTGAAGCCGGATAAAGTTCATGCGGGAGCAACACTTGAGGTTCCTTCCGAAGAGCTTCTTCGCACCAAGTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Complex1_LYR

Protein Analysis

106

Amino Acids

11.53

Weight (kDa)

9.05

Isoelectric Point (pI)

31.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Complex1_LYR PF05347 4 - 59 4.6e-10 Complex 1 protein (LYR family)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011003)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G62810 AT3G62810
fragaria_vesca FvH4_2g25692 FvH4_3g17380
malus_domestica MD03G1287900.v1.1 MD11G1310400.v1.1
prunus_persica Prupe.8G261100_v2.0.a1
pyrus_communis pycom16g13370
rosa_chinensis RchiOBHm_Chr6g0293971
rosa_laevigata RLG00000011911
rosa_multiflora Rmu_sc0005126.1_g000008 Rmu_sc0005647.1_g000004
rosa_roxburghii Rroxscaffold_7G00173780
rosa_rugosa Rorug05G0037400 Rorug06G0239600
rosa_samantha Rh6AG352700 Rh6BG359700 Rh6CG367000 Rh6DG353400
rosa_wichuraiana Rw6G030730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 55
AatII GACGTC 1 cut(s) 140
AccII CGCG 4 cut(s) 26, 52, 92, 231
AclWI GGATC 2 cut(s) 145, 174
AcvI CACGTG 1 cut(s) 133
AcyI GRCGYC 1 cut(s) 137
AfaI GTAC 2 cut(s) 18, 29
AfiI CCNNNNNNNGG 1 cut(s) 169
AflIII ACRYGT 1 cut(s) 24
AjiI CACGTC 1 cut(s) 73
AjnI CCWGG 2 cut(s) 162, 210
AluBI AGCT 3 cut(s) 35, 220, 298
AluI AGCT 3 cut(s) 35, 220, 298
Alw21I GWGCWC 1 cut(s) 13
Alw26I GTCTC 2 cut(s) 63, 164
AlwI GGATC 2 cut(s) 145, 174
AoxI GGCC 2 cut(s) 180, 213
ArsI GACNNNNNNTTYG 2 cut(s) 192, 224
Asp700I GAANNNNTTC 2 cut(s) 59, 297
AspLEI GCGC 1 cut(s) 92
AspS9I GGNCC 1 cut(s) 103
AsuII TTCGAA 1 cut(s) 117
AvaII GGWCC 1 cut(s) 103
BbrPI CACGTG 1 cut(s) 133
Bbv12I GWGCWC 1 cut(s) 13
BceAI ACGGC 1 cut(s) 103
BcgI CGANNNNNNTGC 2 cut(s) 97, 131
BciT130I CCWGG 2 cut(s) 164, 212
BcoDI GTCTC 2 cut(s) 63, 164
BisI GCNGC 3 cut(s) 93, 96, 232
BlsI GCNGC 3 cut(s) 94, 97, 233
BmcAI AGTACT 1 cut(s) 18
Bme1390I CCNGG 2 cut(s) 164, 212
Bme18I GGWCC 1 cut(s) 103
BmgBI CACGTC 1 cut(s) 73
BmgT120I GGNCC 1 cut(s) 103
BmiI GGNNCC 1 cut(s) 285
BmrFI CCNGG 2 cut(s) 164, 212
BmsI GCATC 1 cut(s) 69
Bpu14I TTCGAA 1 cut(s) 117
BpuEI CTTGAG 1 cut(s) 299
BsaAI YACGTR 1 cut(s) 133
BsaHI GRCGYC 1 cut(s) 137
BsaJI CCNNGG 1 cut(s) 229
Bsc4I CCNNNNNNNGG 1 cut(s) 169
BseBI CCWGG 2 cut(s) 164, 212
BseDI CCNNGG 1 cut(s) 229
BseLI CCNNNNNNNGG 1 cut(s) 169
Bsh1236I CGCG 4 cut(s) 26, 52, 92, 231
BshFI GGCC 2 cut(s) 182, 215
BsiHKAI GWGCWC 1 cut(s) 13
BsiSI CCGG 2 cut(s) 66, 251
BslI CCNNNNNNNGG 1 cut(s) 169
BsmAI GTCTC 2 cut(s) 63, 164
BsmBI CGTCTC 1 cut(s) 63
BsnI GGCC 2 cut(s) 182, 215
Bsp119I TTCGAA 1 cut(s) 117
Bsp1286I GDGCHC 1 cut(s) 13
Bsp143I GATC 3 cut(s) 150, 166, 204
BspANI GGCC 2 cut(s) 182, 215
BspFNI CGCG 4 cut(s) 26, 52, 92, 231
BspLI GGNNCC 1 cut(s) 285
BspPI GGATC 2 cut(s) 145, 174
BspQI GCTCTTC 1 cut(s) 288
BspT104I TTCGAA 1 cut(s) 117
BssECI CCNNGG 1 cut(s) 229
BssMI GATC 3 cut(s) 150, 166, 204
BssNI GRCGYC 1 cut(s) 137
Bst2UI CCWGG 2 cut(s) 164, 212
Bst6I CTCTTC 2 cut(s) 114, 288
BstACI GRCGYC 1 cut(s) 137
BstBAI YACGTR 1 cut(s) 133
BstBI TTCGAA 1 cut(s) 117
BstC8I GCNNGC 2 cut(s) 128, 175
BstDSI CCRYGG 1 cut(s) 229
BstENI CCTNNNNNAGG 1 cut(s) 167
BstFNI CGCG 4 cut(s) 26, 52, 92, 231
BstHHI GCGC 1 cut(s) 92
BstKTI GATC 3 cut(s) 153, 169, 207
BstMAI GTCTC 2 cut(s) 63, 164
BstMBI GATC 3 cut(s) 150, 166, 204
BstMWI GCNNNNNNNGC 2 cut(s) 32, 179
BstNI CCWGG 2 cut(s) 164, 212
BstSCI CCNGG 2 cut(s) 162, 210
BstUI CGCG 4 cut(s) 26, 52, 92, 231
BstX2I RGATCY 1 cut(s) 150
BstYI RGATCY 1 cut(s) 150
BsuRI GGCC 2 cut(s) 182, 215
BtgI CCRYGG 1 cut(s) 229
BtrI CACGTC 1 cut(s) 73
Cac8I GCNNGC 2 cut(s) 128, 175
CfoI GCGC 1 cut(s) 92
Cfr13I GGNCC 1 cut(s) 103
Cfr42I CCGCGG 1 cut(s) 232
CseI GACGC 1 cut(s) 58
Csp6I GTAC 2 cut(s) 17, 28
CviAII CATG 1 cut(s) 263
CviJI RGCY 6 cut(s) 35, 182, 215, 220, 250, 298
CviKI_1 RGCY 6 cut(s) 35, 182, 215, 220, 250, 298
CviQI GTAC 2 cut(s) 17, 28
DpnI GATC 3 cut(s) 152, 168, 206
DpnII GATC 3 cut(s) 150, 166, 204
DrdI GACNNNNNNGTC 1 cut(s) 55
DseDI GACNNNNNNGTC 1 cut(s) 55
Eam1104I CTCTTC 2 cut(s) 114, 288
EarI CTCTTC 2 cut(s) 114, 288
EciI GGCGGA 2 cut(s) 113, 161
Eco147I AGGCCT 1 cut(s) 182
Eco47I GGWCC 1 cut(s) 103
Eco72I CACGTG 1 cut(s) 133
EcoNI CCTNNNNNAGG 1 cut(s) 167
EcoRII CCWGG 2 cut(s) 162, 210
Esp3I CGTCTC 1 cut(s) 63
FaeI CATG 1 cut(s) 266
FaiI YATR 1 cut(s) 264
FalI AAGNNNNNCTT 2 cut(s) 285, 317
FatI CATG 1 cut(s) 262
FauI CCCGC 2 cut(s) 236, 259
Fnu4HI GCNGC 3 cut(s) 93, 96, 232
Fsp4HI GCNGC 3 cut(s) 93, 96, 232
GlaI GCGC 1 cut(s) 91
GluI GCNGC 3 cut(s) 93, 96, 232
HaeIII GGCC 2 cut(s) 182, 215
HapII CCGG 2 cut(s) 66, 251
HgaI GACGC 1 cut(s) 58
HhaI GCGC 1 cut(s) 92
Hin1I GRCGYC 1 cut(s) 137
Hin1II CATG 1 cut(s) 266
Hin6I GCGC 1 cut(s) 90
HinP1I GCGC 1 cut(s) 90
HindIII AAGCTT 1 cut(s) 33
HinfI GANTC 1 cut(s) 157
HpaII CCGG 2 cut(s) 66, 251
Hpy188I TCNGA 2 cut(s) 142, 292
Hpy188III TCNNGA 2 cut(s) 154, 315
Hpy99I CGWCG 1 cut(s) 52
HpyAV CCTTC 2 cut(s) 70, 297
HpyCH4IV ACGT 3 cut(s) 72, 132, 137
HpyF10VI GCNNNNNNNGC 2 cut(s) 32, 179
HpySE526I ACGT 3 cut(s) 72, 132, 137
Hsp92I GRCGYC 1 cut(s) 137
Hsp92II CATG 1 cut(s) 266
HspAI GCGC 1 cut(s) 90
KspI CCGCGG 1 cut(s) 232
Kzo9I GATC 3 cut(s) 150, 166, 204
LguI GCTCTTC 1 cut(s) 288
LmnI GCTCC 1 cut(s) 269
LweI GCATC 1 cut(s) 69
MaeII ACGT 3 cut(s) 72, 132, 137
MaeIII GTNAC 3 cut(s) 73, 133, 236
MalI GATC 3 cut(s) 152, 168, 206
MboI GATC 3 cut(s) 150, 166, 204
MboII GAAGA 3 cut(s) 131, 293, 305
MflI RGATCY 1 cut(s) 150
MhlI GDGCHC 1 cut(s) 13
MluCI AATT 1 cut(s) 223
MluI ACGCGT 1 cut(s) 24
MlyI GAGTC 1 cut(s) 166
MnlI CCTC 5 cut(s) 94, 136, 172, 193, 274
MroXI GAANNNNTTC 2 cut(s) 59, 297
MspA1I CMGCKG 1 cut(s) 231
MspI CCGG 2 cut(s) 66, 251
MspR9I CCNGG 2 cut(s) 164, 212
MvaI CCWGG 2 cut(s) 164, 212
MvnI CGCG 4 cut(s) 26, 52, 92, 231
MwoI GCNNNNNNNGC 2 cut(s) 32, 179
NdeII GATC 3 cut(s) 150, 166, 204
NlaIII CATG 1 cut(s) 266
NlaIV GGNNCC 1 cut(s) 285
NmuCI GTSAC 2 cut(s) 73, 133
NspV TTCGAA 1 cut(s) 117
PceI AGGCCT 1 cut(s) 182
PciSI GCTCTTC 1 cut(s) 288
PcsI WCGNNNNNNNCGW 1 cut(s) 69
PdmI GAANNNNTTC 2 cut(s) 59, 297
PfoI TCCNGGA 1 cut(s) 162
PkrI GCNGC 3 cut(s) 94, 97, 233
PleI GAGTC 1 cut(s) 165
PmaCI CACGTG 1 cut(s) 133
PmlI CACGTG 1 cut(s) 133
PpsI GAGTC 1 cut(s) 165
Ppu21I YACGTR 1 cut(s) 133
Psp6I CCWGG 2 cut(s) 162, 210
PspCI CACGTG 1 cut(s) 133
PspGI CCWGG 2 cut(s) 162, 210
PspN4I GGNNCC 1 cut(s) 285
PspPI GGNCC 1 cut(s) 103
PsuI RGATCY 1 cut(s) 150
RsaI GTAC 2 cut(s) 18, 29
RsaNI GTAC 2 cut(s) 17, 28
SacII CCGCGG 1 cut(s) 232
SapI GCTCTTC 1 cut(s) 288
SatI GCNGC 3 cut(s) 93, 96, 232
Sau3AI GATC 3 cut(s) 150, 166, 204
Sau96I GGNCC 1 cut(s) 103
ScaI AGTACT 1 cut(s) 18
SchI GAGTC 1 cut(s) 166
ScrFI CCNGG 2 cut(s) 164, 212
SduI GDGCHC 1 cut(s) 13
SetI ASST 8 cut(s) 37, 75, 105, 135, 140, 222, 285, 300
SfaNI GCATC 1 cut(s) 69
Sfr303I CCGCGG 1 cut(s) 232
SfuI TTCGAA 1 cut(s) 117
SgrBI CCGCGG 1 cut(s) 232
SinI GGWCC 1 cut(s) 103
SmlI CTYRAG 1 cut(s) 278
SmoI CTYRAG 1 cut(s) 278
Sse9I AATT 1 cut(s) 223
SseBI AGGCCT 1 cut(s) 182
StuI AGGCCT 1 cut(s) 182
StyD4I CCNGG 2 cut(s) 162, 210
TaiI ACGT 3 cut(s) 75, 135, 140
TaqI TCGA 1 cut(s) 117
TasI AATT 1 cut(s) 223
TatI WGTACW 1 cut(s) 16
TauI GCSGC 3 cut(s) 95, 98, 234
TseFI GTSAC 2 cut(s) 73, 133
Tsp45I GTSAC 2 cut(s) 73, 133
TspDTI ATGAA 2 cut(s) 181, 251
VpaK11BI GGWCC 1 cut(s) 103
XagI CCTNNNNNAGG 1 cut(s) 167
XmnI GAANNNNTTC 2 cut(s) 59, 297
ZraI GACGTC 1 cut(s) 138
ZrmI AGTACT 1 cut(s) 18
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.