Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011132

Physical Location & Seq

Genomic Coordinates Reverse (-)

23244614 .. 23246066

Gene Structure 1453 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G62880.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGGAGGAAGAATTGCTCTCCGCCGTGCCGTGCTCTTCCCTAACCGTCGAGTCAGTTCTCCGTGTCGCGACGGCCGGTGGATTATATGGGTTATGCGCCGGACCTCGTGACGCTCGTAAAATAGGTTTAAGCGGCGTTTCTCAGGCTTCCTTTGTGGCGAAATCCATTGGCAGATTCGGATTTCAATGCGGTCTTGTAAGTGGTGTGTTTACTATGACACATTGTGGGCTTCAACGATATCGAGGCAAGAATGATTGGGTGAATGCTTTGGTAGGAGGAGCTGTGGCGGGAGCAGCTGTTGCCATTAGCACAAGAAACTGGACACAGGTTGTTGGCATGGCTGGCCTCGTCTCTGCTTTTAGTGTTTTGGCTAATTGCACCAGGACAGAAAACCCAAACAACACTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008104 GO:0008150 GO:0009526 GO:0009527 GO:0009536 GO:0016020 GO:0019867 GO:0031090 GO:0031967 GO:0031968 GO:0031975 GO:0033036 GO:0033365 GO:0034613 GO:0042170 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046983 GO:0051179 GO:0051641 GO:0070727 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tim17

Protein Analysis

136

Amino Acids

14.07

Weight (kDa)

9.01

Isoelectric Point (pI)

17.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tim17	PF02466	6 - 106	7.3e-14	Tim17/Tim22/Tim23/Pmp24 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011132)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62880 AT3G62880
fragaria_vesca	FvH4_2g25740 FvH4_2g25740
malus_domestica	MD03G1288400.v1.1 MD11G1309700.v1.1
prunus_persica	Prupe.8G261600_v2.0.a1 Prupe.8G261600_v2.0.a1 Prupe.8G261600_v2.0.a1 Prupe.8G261600_v2.0.a1
pyrus_communis	pycom03g22840
rosa_chinensis	RchiOBHm_Chr6g0294031
rosa_laevigata	RLG00000011906
rosa_multiflora	Rmu_co8175016.1_g000001
rosa_roxburghii	Rroxscaffold_7G00173710
rosa_rugosa	Rorug06G0240400
rosa_samantha	Rh6AG353300 Rh6BG360200 Rh6DG354000
rosa_wichuraiana	Rw6G030780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	68
AciI	CCGC	4 cut(s)	21, 132, 189, 287
AcoI	YGGCCR	1 cut(s)	72
AdeI	CACNNNGTG	1 cut(s)	224
AgsI	TTSAA	2 cut(s)	185, 233
AjnI	CCWGG	1 cut(s)	380
AluBI	AGCT	2 cut(s)	281, 296
AluI	AGCT	2 cut(s)	281, 296
Alw21I	GWGCWC	1 cut(s)	35
Alw26I	GTCTC	1 cut(s)	355
AoxI	GGCC	2 cut(s)	72, 343
ApeKI	GCWGC	1 cut(s)	293
AspLEI	GCGC	1 cut(s)	98
AspS9I	GGNCC	1 cut(s)	101
AsuHPI	GGTGA	1 cut(s)	271
AvaII	GGWCC	1 cut(s)	101
BauI	CACGAG	1 cut(s)	105
Bbv12I	GWGCWC	1 cut(s)	35
BbvI	GCAGC	1 cut(s)	305
BceAI	ACGGC	3 cut(s)	8, 13, 87
BciT130I	CCWGG	1 cut(s)	382
BcoDI	GTCTC	1 cut(s)	355
BisI	GCNGC	2 cut(s)	133, 294
BlsI	GCNGC	2 cut(s)	134, 295
Bme1390I	CCNGG	1 cut(s)	382
Bme18I	GGWCC	1 cut(s)	101
BmgT120I	GGNCC	1 cut(s)	101
BmrFI	CCNGG	1 cut(s)	382
BsaXI	ACNNNNNCTCC	4 cut(s)	267, 282, 297, 312
Bse118I	RCCGGY	1 cut(s)	74
Bse1I	ACTGG	1 cut(s)	323
BseBI	CCWGG	1 cut(s)	382
BseMII	CTCAG	1 cut(s)	155
BseNI	ACTGG	1 cut(s)	323
BseRI	GAGGAG	1 cut(s)	291
BseX3I	CGGCCG	1 cut(s)	72
BseXI	GCAGC	1 cut(s)	305
Bsh1236I	CGCG	1 cut(s)	68
Bsh1285I	CGRYCG	1 cut(s)	75
BshFI	GGCC	2 cut(s)	74, 345
BsiEI	CGRYCG	1 cut(s)	75
BsiHKAI	GWGCWC	1 cut(s)	35
BsiSI	CCGG	2 cut(s)	75, 99
BsmAI	GTCTC	1 cut(s)	355
BsmBI	CGTCTC	1 cut(s)	355
BsmI	GAATGC	1 cut(s)	268
BsnI	GGCC	2 cut(s)	74, 345
Bsp1286I	GDGCHC	1 cut(s)	35
Bsp68I	TCGCGA	1 cut(s)	68
BspACI	CCGC	4 cut(s)	21, 132, 189, 287
BspANI	GGCC	2 cut(s)	74, 345
BspCNI	CTCAG	1 cut(s)	154
BspFNI	CGCG	1 cut(s)	68
BspQI	GCTCTTC	1 cut(s)	40
BsrFI	RCCGGY	1 cut(s)	74
BsrI	ACTGG	1 cut(s)	323
BssAI	RCCGGY	1 cut(s)	74
BssSI	CACGAG	1 cut(s)	105
Bst2BI	CACGAG	1 cut(s)	105
Bst2UI	CCWGG	1 cut(s)	382
Bst4CI	ACNGT	1 cut(s)	46
Bst6I	CTCTTC	1 cut(s)	40
BstAPI	GCANNNNNTGC	1 cut(s)	299
BstC8I	GCNNGC	1 cut(s)	343
BstDEI	CTNAG	1 cut(s)	141
BstFNI	CGCG	1 cut(s)	68
BstHHI	GCGC	1 cut(s)	98
BstMAI	GTCTC	1 cut(s)	355
BstMCI	CGRYCG	1 cut(s)	75
BstMWI	GCNNNNNNNGC	3 cut(s)	293, 299, 342
BstNI	CCWGG	1 cut(s)	382
BstSCI	CCNGG	1 cut(s)	380
BstUI	CGCG	1 cut(s)	68
BstV1I	GCAGC	1 cut(s)	305
BstZI	CGGCCG	1 cut(s)	72
BsuRI	GGCC	2 cut(s)	74, 345
BtuMI	TCGCGA	1 cut(s)	68
Cac8I	GCNNGC	1 cut(s)	343
CfoI	GCGC	1 cut(s)	98
Cfr10I	RCCGGY	1 cut(s)	74
Cfr13I	GGNCC	1 cut(s)	101
CseI	GACGC	1 cut(s)	119
CviAII	CATG	1 cut(s)	337
CviJI	RGCY	8 cut(s)	74, 146, 229, 281, 296, 341, 345, 371
CviKI_1	RGCY	8 cut(s)	74, 146, 229, 281, 296, 341, 345, 371
DdeI	CTNAG	1 cut(s)	141
DraIII	CACNNNGTG	1 cut(s)	224
EaeI	YGGCCR	1 cut(s)	72
EagI	CGGCCG	1 cut(s)	72
Eam1104I	CTCTTC	1 cut(s)	40
EarI	CTCTTC	1 cut(s)	40
EciI	GGCGGA	1 cut(s)	10
EclXI	CGGCCG	1 cut(s)	72
Eco32I	GATATC	1 cut(s)	239
Eco47I	GGWCC	1 cut(s)	101
Eco52I	CGGCCG	1 cut(s)	72
EcoRII	CCWGG	1 cut(s)	380
EcoRV	GATATC	1 cut(s)	239
Esp3I	CGTCTC	1 cut(s)	355
FaeI	CATG	1 cut(s)	340
FaiI	YATR	5 cut(s)	85, 87, 94, 215, 338
FatI	CATG	1 cut(s)	336
FauI	CCCGC	1 cut(s)	280
Fnu4HI	GCNGC	2 cut(s)	133, 294
Fsp4HI	GCNGC	2 cut(s)	133, 294
GlaI	GCGC	1 cut(s)	97
GluI	GCNGC	2 cut(s)	133, 294
HaeIII	GGCC	2 cut(s)	74, 345
HapII	CCGG	2 cut(s)	75, 99
HgaI	GACGC	1 cut(s)	119
HhaI	GCGC	1 cut(s)	98
Hin1II	CATG	1 cut(s)	340
Hin6I	GCGC	1 cut(s)	96
HinP1I	GCGC	1 cut(s)	96
HinfI	GANTC	2 cut(s)	50, 174
HpaII	CCGG	2 cut(s)	75, 99
HphI	GGTGA	1 cut(s)	271
Hpy166II	GTNNAC	1 cut(s)	210
Hpy188I	TCNGA	1 cut(s)	179
Hpy188III	TCNNGA	2 cut(s)	67, 107
Hpy8I	GTNNAC	1 cut(s)	210
Hpy99I	CGWCG	2 cut(s)	50, 73
HpyCH4III	ACNGT	1 cut(s)	46
HpyCH4V	TGCA	1 cut(s)	378
HpyF10VI	GCNNNNNNNGC	3 cut(s)	293, 299, 342
HpyF3I	CTNAG	1 cut(s)	141
Hsp92II	CATG	1 cut(s)	340
HspAI	GCGC	1 cut(s)	96
LguI	GCTCTTC	1 cut(s)	40
LmnI	GCTCC	2 cut(s)	278, 290
LpnPI	CCDG	8 cut(s)	88, 112, 128, 304, 311, 327, 367, 394
Lsp1109I	GCAGC	1 cut(s)	305
MaeIII	GTNAC	1 cut(s)	107
MboII	GAAGA	2 cut(s)	20, 27
MhlI	GDGCHC	1 cut(s)	35
MluCI	AATT	3 cut(s)	11, 373, 406
MlyI	GAGTC	1 cut(s)	59
MnlI	CCTC	4 cut(s)	114, 236, 269, 356
MseI	TTAA	2 cut(s)	128, 409
MspA1I	CMGCKG	1 cut(s)	296
MspI	CCGG	2 cut(s)	75, 99
MspR9I	CCNGG	1 cut(s)	382
Mva1269I	GAATGC	1 cut(s)	268
MvaI	CCWGG	1 cut(s)	382
MvnI	CGCG	1 cut(s)	68
MwoI	GCNNNNNNNGC	3 cut(s)	293, 299, 342
NlaIII	CATG	1 cut(s)	340
NmuCI	GTSAC	1 cut(s)	107
NruI	TCGCGA	1 cut(s)	68
PciSI	GCTCTTC	1 cut(s)	40
PcsI	WCGNNNNNNNCGW	1 cut(s)	112
PctI	GAATGC	1 cut(s)	268
PfeI	GAWTC	1 cut(s)	174
PkrI	GCNGC	2 cut(s)	134, 295
PleI	GAGTC	1 cut(s)	58
PpsI	GAGTC	1 cut(s)	58
Psp6I	CCWGG	1 cut(s)	380
PspGI	CCWGG	1 cut(s)	380
PspPI	GGNCC	1 cut(s)	101
PvuII	CAGCTG	1 cut(s)	296
RruI	TCGCGA	1 cut(s)	68
SapI	GCTCTTC	1 cut(s)	40
SaqAI	TTAA	2 cut(s)	128, 409
SatI	GCNGC	2 cut(s)	133, 294
Sau96I	GGNCC	1 cut(s)	101
SchI	GAGTC	1 cut(s)	59
ScrFI	CCNGG	1 cut(s)	382
SduI	GDGCHC	1 cut(s)	35
SetI	ASST	5 cut(s)	106, 127, 283, 298, 330
SinI	GGWCC	1 cut(s)	101
Sse9I	AATT	3 cut(s)	11, 373, 406
SsiI	CCGC	4 cut(s)	21, 132, 189, 287
StyD4I	CCNGG	1 cut(s)	380
TaaI	ACNGT	1 cut(s)	46
TaqI	TCGA	2 cut(s)	48, 241
TasI	AATT	3 cut(s)	11, 373, 406
TauI	GCSGC	1 cut(s)	135
TfiI	GAWTC	1 cut(s)	174
Tru1I	TTAA	2 cut(s)	128, 409
Tru9I	TTAA	2 cut(s)	128, 409
TseFI	GTSAC	1 cut(s)	107
TseI	GCWGC	1 cut(s)	293
Tsp45I	GTSAC	1 cut(s)	107
TspGWI	ACGGA	1 cut(s)	50
VpaK11BI	GGWCC	1 cut(s)	101

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.